Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01625 and DDA3937_RS01630 are separated by 15 nucleotides DDA3937_RS01630 and DDA3937_RS01635 are separated by 297 nucleotides DDA3937_RS01635 and DDA3937_RS01640 overlap by 8 nucleotides
DDA3937_RS01625: DDA3937_RS01625 - 50S ribosomal protein L13, at 358,037 to 358,465
_RS01625
DDA3937_RS01630: DDA3937_RS01630 - 30S ribosomal protein S9, at 358,481 to 358,873
_RS01630
DDA3937_RS01635: DDA3937_RS01635 - TetR/AcrR family transcriptional regulator, at 359,171 to 359,797
_RS01635
DDA3937_RS01640: DDA3937_RS01640 - multidrug effflux MFS transporter, at 359,790 to 361,043
_RS01640
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.986 kb on + strand at 359.017 kb on + strand at 359.017 kb on + strand at 359.017 kb on + strand at 359.025 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.040 kb on - strand at 359.060 kb on + strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.063 kb on + strand at 359.063 kb on + strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.109 kb on + strand at 359.109 kb on + strand at 359.110 kb on - strand at 359.110 kb on - strand at 359.110 kb on - strand at 359.131 kb on + strand at 359.131 kb on + strand at 359.156 kb on + strand at 359.241 kb on - strand, within DDA3937_RS01635 at 359.257 kb on + strand, within DDA3937_RS01635 at 359.318 kb on - strand, within DDA3937_RS01635 at 359.328 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.351 kb on - strand, within DDA3937_RS01635 at 359.351 kb on - strand, within DDA3937_RS01635 at 359.427 kb on - strand, within DDA3937_RS01635 at 359.479 kb on - strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.511 kb on + strand, within DDA3937_RS01635 at 359.512 kb on - strand, within DDA3937_RS01635 at 359.514 kb on - strand, within DDA3937_RS01635 at 359.543 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.575 kb on + strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.622 kb on + strand, within DDA3937_RS01635 at 359.622 kb on + strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.643 kb on - strand, within DDA3937_RS01635 at 359.740 kb on + strand at 359.740 kb on + strand at 359.741 kb on - strand at 359.802 kb on + strand at 359.803 kb on - strand at 359.829 kb on + strand at 359.829 kb on + strand at 359.829 kb on + strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.843 kb on - strand at 359.843 kb on - strand at 359.843 kb on - strand at 359.873 kb on + strand at 359.873 kb on + strand at 359.873 kb on + strand at 359.881 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.894 kb on - strand at 359.963 kb on - strand, within DDA3937_RS01640 at 360.018 kb on + strand, within DDA3937_RS01640 at 360.030 kb on - strand, within DDA3937_RS01640 at 360.030 kb on - strand, within DDA3937_RS01640 at 360.060 kb on - strand, within DDA3937_RS01640 at 360.097 kb on + strand, within DDA3937_RS01640 at 360.098 kb on - strand, within DDA3937_RS01640 at 360.098 kb on - strand, within DDA3937_RS01640 at 360.184 kb on - strand, within DDA3937_RS01640 at 360.206 kb on + strand, within DDA3937_RS01640 at 360.207 kb on - strand, within DDA3937_RS01640 at 360.207 kb on - strand, within DDA3937_RS01640 at 360.260 kb on - strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.271 kb on - strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.435 kb on + strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.572 kb on + strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.750 kb on + strand, within DDA3937_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 358,986 + +0.1 359,017 + -0.2 359,017 + -0.2 359,017 + +0.1 359,025 + -0.2 359,039 + -0.6 359,039 + +0.8 359,039 + -0.1 359,039 + +0.2 359,040 - +0.2 359,060 + +0.1 359,061 - +0.4 359,061 - -0.3 359,061 - +0.4 359,061 - +0.4 359,063 + -0.8 359,063 + -0.4 359,064 - +1.5 359,064 - -0.4 359,064 - +0.2 359,064 - -0.7 359,109 + -0.3 359,109 + -0.0 359,110 - -0.2 359,110 - -0.1 359,110 - -0.3 359,131 + -0.3 359,131 + -0.1 359,156 + -2.5 359,241 - DDA3937_RS01635 0.11 -0.6 359,257 + DDA3937_RS01635 0.14 -0.8 359,318 - DDA3937_RS01635 0.23 +0.1 359,328 + DDA3937_RS01635 0.25 -0.5 359,332 + DDA3937_RS01635 0.26 -1.9 359,332 + DDA3937_RS01635 0.26 -0.3 359,332 + DDA3937_RS01635 0.26 +1.5 359,332 + DDA3937_RS01635 0.26 -0.7 359,333 - DDA3937_RS01635 0.26 -0.3 359,333 - DDA3937_RS01635 0.26 -0.3 359,333 - DDA3937_RS01635 0.26 +0.1 359,333 - DDA3937_RS01635 0.26 -0.5 359,333 - DDA3937_RS01635 0.26 -1.2 359,350 + DDA3937_RS01635 0.29 +1.1 359,350 + DDA3937_RS01635 0.29 +0.1 359,350 + DDA3937_RS01635 0.29 -0.1 359,351 - DDA3937_RS01635 0.29 -0.6 359,351 - DDA3937_RS01635 0.29 -0.8 359,427 - DDA3937_RS01635 0.41 -0.7 359,479 - DDA3937_RS01635 0.49 -0.1 359,481 + DDA3937_RS01635 0.49 -0.3 359,481 + DDA3937_RS01635 0.49 -0.5 359,481 + DDA3937_RS01635 0.49 -1.9 359,511 + DDA3937_RS01635 0.54 -0.2 359,512 - DDA3937_RS01635 0.54 -0.3 359,514 - DDA3937_RS01635 0.55 -0.9 359,543 + DDA3937_RS01635 0.59 +0.7 359,556 + DDA3937_RS01635 0.61 -1.1 359,556 + DDA3937_RS01635 0.61 -0.3 359,556 + DDA3937_RS01635 0.61 -0.0 359,575 + DDA3937_RS01635 0.64 -0.3 359,576 - DDA3937_RS01635 0.65 +0.2 359,576 - DDA3937_RS01635 0.65 -0.2 359,576 - DDA3937_RS01635 0.65 +0.4 359,622 + DDA3937_RS01635 0.72 +0.1 359,622 + DDA3937_RS01635 0.72 +0.6 359,623 - DDA3937_RS01635 0.72 +1.7 359,623 - DDA3937_RS01635 0.72 -0.8 359,623 - DDA3937_RS01635 0.72 -1.3 359,642 + DDA3937_RS01635 0.75 -0.2 359,642 + DDA3937_RS01635 0.75 -0.8 359,642 + DDA3937_RS01635 0.75 -0.0 359,643 - DDA3937_RS01635 0.75 -1.3 359,740 + -0.2 359,740 + -0.8 359,741 - -0.5 359,802 + -0.2 359,803 - -1.2 359,829 + +0.7 359,829 + -1.7 359,829 + +0.3 359,830 - -0.9 359,830 - +0.7 359,830 - +0.3 359,830 - +0.7 359,830 - -0.8 359,843 - +0.5 359,843 - -0.5 359,843 - +0.7 359,873 + +0.3 359,873 + +0.4 359,873 + -1.2 359,881 + +0.3 359,889 + +0.6 359,889 + +0.4 359,889 + -0.3 359,889 + -0.8 359,889 + +0.4 359,889 + -1.3 359,889 + -0.1 359,889 + +0.2 359,889 + -0.3 359,889 + -1.1 359,890 - +0.5 359,890 - +0.1 359,890 - +0.2 359,890 - +0.3 359,890 - +0.1 359,890 - +0.8 359,890 - -1.7 359,890 - +0.8 359,894 - -0.3 359,963 - DDA3937_RS01640 0.14 -0.3 360,018 + DDA3937_RS01640 0.18 +0.6 360,030 - DDA3937_RS01640 0.19 -0.4 360,030 - DDA3937_RS01640 0.19 +0.1 360,060 - DDA3937_RS01640 0.22 +0.6 360,097 + DDA3937_RS01640 0.24 -1.2 360,098 - DDA3937_RS01640 0.25 -0.0 360,098 - DDA3937_RS01640 0.25 -0.4 360,184 - DDA3937_RS01640 0.31 +0.5 360,206 + DDA3937_RS01640 0.33 +0.1 360,207 - DDA3937_RS01640 0.33 -0.4 360,207 - DDA3937_RS01640 0.33 -0.3 360,260 - DDA3937_RS01640 0.37 +0.3 360,270 + DDA3937_RS01640 0.38 -0.5 360,270 + DDA3937_RS01640 0.38 -1.4 360,270 + DDA3937_RS01640 0.38 -0.6 360,270 + DDA3937_RS01640 0.38 -0.5 360,271 - DDA3937_RS01640 0.38 +0.3 360,349 + DDA3937_RS01640 0.45 -0.6 360,349 + DDA3937_RS01640 0.45 -0.6 360,435 + DDA3937_RS01640 0.51 -1.3 360,436 - DDA3937_RS01640 0.52 -1.7 360,436 - DDA3937_RS01640 0.52 +2.1 360,436 - DDA3937_RS01640 0.52 +0.0 360,436 - DDA3937_RS01640 0.52 -0.4 360,471 + DDA3937_RS01640 0.54 -0.5 360,471 + DDA3937_RS01640 0.54 -0.3 360,471 + DDA3937_RS01640 0.54 -2.4 360,472 - DDA3937_RS01640 0.54 -0.7 360,472 - DDA3937_RS01640 0.54 +0.3 360,472 - DDA3937_RS01640 0.54 -0.4 360,472 - DDA3937_RS01640 0.54 -0.1 360,472 - DDA3937_RS01640 0.54 +0.0 360,473 + DDA3937_RS01640 0.54 -0.4 360,473 + DDA3937_RS01640 0.54 -0.7 360,473 + DDA3937_RS01640 0.54 -0.9 360,473 + DDA3937_RS01640 0.54 -0.7 360,474 - DDA3937_RS01640 0.55 +0.3 360,474 - DDA3937_RS01640 0.55 +0.2 360,513 + DDA3937_RS01640 0.58 +0.3 360,513 + DDA3937_RS01640 0.58 -1.2 360,513 + DDA3937_RS01640 0.58 -0.6 360,514 - DDA3937_RS01640 0.58 +0.6 360,514 - DDA3937_RS01640 0.58 -0.1 360,514 - DDA3937_RS01640 0.58 +0.6 360,514 - DDA3937_RS01640 0.58 -1.3 360,514 - DDA3937_RS01640 0.58 +1.6 360,572 + DDA3937_RS01640 0.62 -0.8 360,573 - DDA3937_RS01640 0.62 +0.9 360,573 - DDA3937_RS01640 0.62 -0.8 360,689 + DDA3937_RS01640 0.72 -0.3 360,689 + DDA3937_RS01640 0.72 -1.5 360,689 + DDA3937_RS01640 0.72 +0.9 360,689 + DDA3937_RS01640 0.72 +0.8 360,689 + DDA3937_RS01640 0.72 +0.4 360,690 - DDA3937_RS01640 0.72 -0.3 360,690 - DDA3937_RS01640 0.72 +0.0 360,750 + DDA3937_RS01640 0.77 -1.1
Or see this region's nucleotide sequence