Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01380 and DDA3937_RS01385 are separated by 14 nucleotides DDA3937_RS01385 and DDA3937_RS01390 overlap by 11 nucleotides DDA3937_RS01390 and DDA3937_RS01395 are separated by 193 nucleotides
DDA3937_RS01380: DDA3937_RS01380 - 50S ribosomal protein L11 methyltransferase, at 309,023 to 309,910
_RS01380
DDA3937_RS01385: DDA3937_RS01385 - sodium/pantothenate symporter, at 309,925 to 311,376
_RS01385
DDA3937_RS01390: DDA3937_RS01390 - YhdT family protein, at 311,366 to 311,608
_RS01390
DDA3937_RS01395: DDA3937_RS01395 - acetyl-CoA carboxylase biotin carboxylase subunit, at 311,802 to 313,145
_RS01395
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.929 kb on + strand at 308.946 kb on + strand at 308.946 kb on + strand at 308.947 kb on - strand at 308.947 kb on - strand at 308.949 kb on + strand at 308.949 kb on + strand at 308.949 kb on + strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.968 kb on - strand at 309.103 kb on - strand at 309.103 kb on - strand at 309.103 kb on - strand at 309.273 kb on + strand, within DDA3937_RS01380 at 309.273 kb on + strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.301 kb on + strand, within DDA3937_RS01380 at 309.732 kb on + strand, within DDA3937_RS01380 at 309.732 kb on + strand, within DDA3937_RS01380 at 309.809 kb on - strand, within DDA3937_RS01380 at 309.884 kb on - strand at 309.910 kb on + strand at 309.910 kb on + strand at 309.911 kb on - strand at 309.911 kb on - strand at 309.987 kb on + strand at 309.988 kb on - strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.071 kb on - strand, within DDA3937_RS01385 at 310.071 kb on - strand, within DDA3937_RS01385 at 310.071 kb on - strand, within DDA3937_RS01385 at 310.071 kb on - strand, within DDA3937_RS01385 at 310.281 kb on + strand, within DDA3937_RS01385 at 310.281 kb on + strand, within DDA3937_RS01385 at 310.281 kb on + strand, within DDA3937_RS01385 at 310.281 kb on + strand, within DDA3937_RS01385 at 310.281 kb on + strand, within DDA3937_RS01385 at 310.282 kb on - strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.283 kb on + strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.284 kb on - strand, within DDA3937_RS01385 at 310.311 kb on - strand, within DDA3937_RS01385 at 310.531 kb on + strand, within DDA3937_RS01385 at 310.532 kb on - strand, within DDA3937_RS01385 at 310.532 kb on - strand, within DDA3937_RS01385 at 310.763 kb on + strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.889 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand at 311.033 kb on + strand at 311.033 kb on + strand, within DDA3937_RS01385 at 311.033 kb on + strand, within DDA3937_RS01385 at 311.034 kb on - strand, within DDA3937_RS01385 at 311.034 kb on - strand, within DDA3937_RS01385 at 311.064 kb on - strand, within DDA3937_RS01385 at 311.162 kb on + strand, within DDA3937_RS01385 at 311.162 kb on + strand, within DDA3937_RS01385 at 311.168 kb on + strand, within DDA3937_RS01385 at 311.169 kb on - strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.215 kb on - strand, within DDA3937_RS01385 at 311.312 kb on + strand at 311.312 kb on + strand at 311.313 kb on - strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.343 kb on - strand at 311.406 kb on - strand, within DDA3937_RS01390 at 311.537 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.545 kb on - strand, within DDA3937_RS01390 at 311.559 kb on - strand, within DDA3937_RS01390 at 311.594 kb on - strand at 311.653 kb on + strand at 311.653 kb on + strand at 311.654 kb on - strand at 311.654 kb on - strand at 311.654 kb on - strand at 311.660 kb on + strand at 311.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 308,929 + +0.9 308,946 + -0.7 308,946 + -0.6 308,947 - -0.7 308,947 - +1.6 308,949 + +0.1 308,949 + +0.1 308,949 + -0.4 308,950 - -0.2 308,950 - -0.1 308,950 - +1.3 308,950 - -0.4 308,968 - -0.6 309,103 - +0.7 309,103 - +0.8 309,103 - +0.7 309,273 + DDA3937_RS01380 0.28 +0.2 309,273 + DDA3937_RS01380 0.28 +0.8 309,274 - DDA3937_RS01380 0.28 -0.0 309,274 - DDA3937_RS01380 0.28 +0.9 309,274 - DDA3937_RS01380 0.28 -0.7 309,301 + DDA3937_RS01380 0.31 +1.3 309,732 + DDA3937_RS01380 0.80 -2.6 309,732 + DDA3937_RS01380 0.80 +0.1 309,809 - DDA3937_RS01380 0.89 -1.3 309,884 - -0.6 309,910 + +1.4 309,910 + -0.7 309,911 - +0.4 309,911 - +0.2 309,987 + -0.5 309,988 - -0.1 310,070 + -0.3 310,070 + -1.3 310,070 + +0.4 310,071 - DDA3937_RS01385 0.10 +0.4 310,071 - DDA3937_RS01385 0.10 -0.8 310,071 - DDA3937_RS01385 0.10 -1.1 310,071 - DDA3937_RS01385 0.10 -0.9 310,281 + DDA3937_RS01385 0.25 -0.9 310,281 + DDA3937_RS01385 0.25 +0.0 310,281 + DDA3937_RS01385 0.25 +0.1 310,281 + DDA3937_RS01385 0.25 -1.1 310,281 + DDA3937_RS01385 0.25 +0.4 310,282 - DDA3937_RS01385 0.25 -0.3 310,283 + DDA3937_RS01385 0.25 +0.4 310,283 + DDA3937_RS01385 0.25 -0.5 310,283 + DDA3937_RS01385 0.25 -0.6 310,283 + DDA3937_RS01385 0.25 -1.2 310,283 + DDA3937_RS01385 0.25 -1.9 310,283 + DDA3937_RS01385 0.25 -1.6 310,284 - DDA3937_RS01385 0.25 -0.4 310,284 - DDA3937_RS01385 0.25 -0.3 310,284 - DDA3937_RS01385 0.25 -1.0 310,284 - DDA3937_RS01385 0.25 -1.5 310,284 - +0.1 310,284 - DDA3937_RS01385 0.25 -0.8 310,284 - DDA3937_RS01385 0.25 -0.6 310,284 - DDA3937_RS01385 0.25 -0.7 310,311 - DDA3937_RS01385 0.27 -0.3 310,531 + DDA3937_RS01385 0.42 +2.7 310,532 - DDA3937_RS01385 0.42 +0.0 310,532 - DDA3937_RS01385 0.42 +0.2 310,763 + DDA3937_RS01385 0.58 +0.7 310,764 - DDA3937_RS01385 0.58 -1.4 310,764 - DDA3937_RS01385 0.58 -1.2 310,764 - DDA3937_RS01385 0.58 -1.3 310,764 - DDA3937_RS01385 0.58 -1.6 310,862 + DDA3937_RS01385 0.65 +1.1 310,862 + DDA3937_RS01385 0.65 -0.6 310,862 + DDA3937_RS01385 0.65 +0.7 310,862 + DDA3937_RS01385 0.65 -1.0 310,862 + DDA3937_RS01385 0.65 -0.8 310,863 - DDA3937_RS01385 0.65 -0.4 310,863 - DDA3937_RS01385 0.65 +0.2 310,863 - DDA3937_RS01385 0.65 +0.4 310,863 - DDA3937_RS01385 0.65 -0.7 310,863 - DDA3937_RS01385 0.65 +0.1 310,876 - DDA3937_RS01385 0.65 +0.4 310,876 - DDA3937_RS01385 0.65 -1.1 310,876 - DDA3937_RS01385 0.65 +0.1 310,876 - DDA3937_RS01385 0.65 -0.2 310,889 - DDA3937_RS01385 0.66 -1.4 310,905 - DDA3937_RS01385 0.67 -1.1 310,905 - DDA3937_RS01385 0.67 -2.3 310,905 - DDA3937_RS01385 0.67 -0.5 310,905 - DDA3937_RS01385 0.67 +0.4 310,905 - -0.9 311,033 + -0.3 311,033 + DDA3937_RS01385 0.76 -0.1 311,033 + DDA3937_RS01385 0.76 +0.1 311,034 - DDA3937_RS01385 0.76 +0.4 311,034 - DDA3937_RS01385 0.76 -1.1 311,064 - DDA3937_RS01385 0.78 +0.1 311,162 + DDA3937_RS01385 0.85 +0.3 311,162 + DDA3937_RS01385 0.85 -0.3 311,168 + DDA3937_RS01385 0.86 +0.2 311,169 - DDA3937_RS01385 0.86 -0.1 311,210 + DDA3937_RS01385 0.88 -1.6 311,210 + DDA3937_RS01385 0.88 +0.2 311,210 + DDA3937_RS01385 0.88 -0.2 311,210 + DDA3937_RS01385 0.88 -1.2 311,210 + DDA3937_RS01385 0.88 -0.1 311,210 + DDA3937_RS01385 0.88 +0.1 311,210 + DDA3937_RS01385 0.88 -2.6 311,211 - DDA3937_RS01385 0.89 -0.9 311,211 - DDA3937_RS01385 0.89 -2.1 311,211 - DDA3937_RS01385 0.89 -1.2 311,211 - DDA3937_RS01385 0.89 +0.7 311,211 - DDA3937_RS01385 0.89 -0.4 311,211 - DDA3937_RS01385 0.89 -0.1 311,211 - DDA3937_RS01385 0.89 -0.3 311,211 - DDA3937_RS01385 0.89 -0.8 311,215 - DDA3937_RS01385 0.89 -0.0 311,312 + -1.5 311,312 + -0.3 311,313 - -0.8 311,338 + -0.5 311,338 + -0.1 311,338 + -1.0 311,338 + -0.9 311,339 - -1.7 311,339 - -0.6 311,339 - -2.0 311,339 - -0.6 311,339 - -0.4 311,339 - -1.2 311,339 - +0.2 311,339 - -0.5 311,343 - +0.7 311,406 - DDA3937_RS01390 0.16 -0.6 311,537 + DDA3937_RS01390 0.70 -1.2 311,544 + DDA3937_RS01390 0.73 -0.4 311,544 + DDA3937_RS01390 0.73 -0.3 311,544 + DDA3937_RS01390 0.73 +0.4 311,545 - DDA3937_RS01390 0.74 +1.1 311,559 - DDA3937_RS01390 0.79 -0.6 311,594 - -1.6 311,653 + -0.4 311,653 + +1.5 311,654 - -0.5 311,654 - -2.1 311,654 - +0.0 311,660 + +1.7 311,685 + +1.0
Or see this region's nucleotide sequence