Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00955

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00950 and DDA3937_RS00955 are separated by 2 nucleotidesDDA3937_RS00955 and DDA3937_RS00960 are separated by 342 nucleotides DDA3937_RS00950: DDA3937_RS00950 - cystathionine gamma-synthase, at 217,701 to 218,861 _RS00950 DDA3937_RS00955: DDA3937_RS00955 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 218,864 to 221,299 _RS00955 DDA3937_RS00960: DDA3937_RS00960 - methylenetetrahydrofolate reductase, at 221,642 to 222,538 _RS00960 Position (kb) 218 219 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2 3at 217.928 kb on + strand, within DDA3937_RS00950at 217.928 kb on + strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.929 kb on - strand, within DDA3937_RS00950at 217.952 kb on + strand, within DDA3937_RS00950at 218.001 kb on + strand, within DDA3937_RS00950at 218.013 kb on + strand, within DDA3937_RS00950at 218.014 kb on - strand, within DDA3937_RS00950at 218.049 kb on + strand, within DDA3937_RS00950at 218.231 kb on + strandat 218.231 kb on + strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.296 kb on - strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.384 kb on + strand, within DDA3937_RS00950at 218.385 kb on - strand, within DDA3937_RS00950at 218.415 kb on + strand, within DDA3937_RS00950at 218.415 kb on + strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.416 kb on - strand, within DDA3937_RS00950at 218.453 kb on + strand, within DDA3937_RS00950at 218.454 kb on - strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.493 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.526 kb on + strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.527 kb on - strand, within DDA3937_RS00950at 218.859 kb on + strandat 218.860 kb on - strandat 218.860 kb on - strandat 218.874 kb on + strandat 218.874 kb on + strandat 218.968 kb on + strandat 218.978 kb on + strandat 219.088 kb on - strandat 219.160 kb on + strand, within DDA3937_RS00955at 219.161 kb on - strand, within DDA3937_RS00955at 219.231 kb on - strand, within DDA3937_RS00955at 219.231 kb on - strand, within DDA3937_RS00955at 219.329 kb on - strand, within DDA3937_RS00955at 219.437 kb on - strand, within DDA3937_RS00955at 219.445 kb on + strand, within DDA3937_RS00955at 219.445 kb on + strand, within DDA3937_RS00955at 219.446 kb on - strand, within DDA3937_RS00955at 219.500 kb on + strand, within DDA3937_RS00955at 219.500 kb on + strand, within DDA3937_RS00955at 219.547 kb on + strand, within DDA3937_RS00955at 219.547 kb on + strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.548 kb on - strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.731 kb on + strand, within DDA3937_RS00955at 219.732 kb on - strand, within DDA3937_RS00955at 219.732 kb on - strand, within DDA3937_RS00955at 219.956 kb on + strand, within DDA3937_RS00955at 219.956 kb on + strand, within DDA3937_RS00955at 219.956 kb on + strand, within DDA3937_RS00955at 219.956 kb on + strand, within DDA3937_RS00955at 219.957 kb on - strand, within DDA3937_RS00955at 220.100 kb on + strand, within DDA3937_RS00955at 220.254 kb on + strand, within DDA3937_RS00955at 220.254 kb on + strand, within DDA3937_RS00955at 220.385 kb on + strand, within DDA3937_RS00955at 220.386 kb on - strand, within DDA3937_RS00955at 220.538 kb on + strand, within DDA3937_RS00955at 220.538 kb on + strand, within DDA3937_RS00955at 220.539 kb on - strand, within DDA3937_RS00955at 220.539 kb on - strand, within DDA3937_RS00955at 220.539 kb on - strand, within DDA3937_RS00955at 220.613 kb on + strand, within DDA3937_RS00955at 220.613 kb on + strand, within DDA3937_RS00955at 220.613 kb on + strand, within DDA3937_RS00955at 220.614 kb on - strand, within DDA3937_RS00955at 220.661 kb on + strand, within DDA3937_RS00955at 220.662 kb on - strand, within DDA3937_RS00955at 220.662 kb on - strandat 220.697 kb on + strand, within DDA3937_RS00955at 220.697 kb on + strand, within DDA3937_RS00955at 220.697 kb on + strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.698 kb on - strand, within DDA3937_RS00955at 220.750 kb on + strand, within DDA3937_RS00955at 220.750 kb on + strand, within DDA3937_RS00955at 220.808 kb on - strand, within DDA3937_RS00955at 220.900 kb on + strand, within DDA3937_RS00955at 221.079 kb on - strandat 221.115 kb on + strandat 221.170 kb on + strandat 221.247 kb on + strandat 221.414 kb on - strandat 221.414 kb on - strandat 221.424 kb on + strandat 221.424 kb on + strandat 221.424 kb on + strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.425 kb on - strandat 221.432 kb on - strandat 221.444 kb on + strandat 221.444 kb on + strandat 221.444 kb on + strandat 221.445 kb on - strandat 221.445 kb on - strandat 221.445 kb on - strandat 221.449 kb on - strandat 221.449 kb on - strandat 221.526 kb on + strandat 221.526 kb on + strandat 221.526 kb on + strandat 221.611 kb on - strandat 221.611 kb on - strandat 221.619 kb on + strandat 221.620 kb on - strandat 221.635 kb on + strandat 221.635 kb on + strandat 221.636 kb on - strandat 221.636 kb on - strandat 221.641 kb on + strandat 221.642 kb on - strandat 221.642 kb on - strandat 221.642 kb on - strandat 221.697 kb on + strandat 221.697 kb on + strandat 221.697 kb on + strandat 221.711 kb on - strandat 221.800 kb on + strand, within DDA3937_RS00960at 221.800 kb on + strand, within DDA3937_RS00960at 221.801 kb on - strand, within DDA3937_RS00960at 221.819 kb on + strand, within DDA3937_RS00960at 221.820 kb on - strand, within DDA3937_RS00960at 221.820 kb on - strand, within DDA3937_RS00960at 221.881 kb on + strand, within DDA3937_RS00960at 221.881 kb on + strand, within DDA3937_RS00960at 222.019 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.032 kb on + strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.033 kb on - strand, within DDA3937_RS00960at 222.080 kb on - strand, within DDA3937_RS00960at 222.080 kb on - strand, within DDA3937_RS00960at 222.080 kb on - strand, within DDA3937_RS00960at 222.096 kb on - strand, within DDA3937_RS00960at 222.142 kb on + strand, within DDA3937_RS00960at 222.143 kb on - strand, within DDA3937_RS00960at 222.143 kb on - strand, within DDA3937_RS00960

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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217,928 + DDA3937_RS00950 0.20 -0.4
217,928 + DDA3937_RS00950 0.20 +1.5
217,929 - DDA3937_RS00950 0.20 -2.6
217,929 - DDA3937_RS00950 0.20 +0.7
217,929 - DDA3937_RS00950 0.20 -0.5
217,952 + DDA3937_RS00950 0.22 +0.5
218,001 + DDA3937_RS00950 0.26 -0.3
218,013 + DDA3937_RS00950 0.27 +0.1
218,014 - DDA3937_RS00950 0.27 -0.1
218,049 + DDA3937_RS00950 0.30 +0.1
218,231 + +1.3
218,231 + DDA3937_RS00950 0.46 +0.7
218,296 - DDA3937_RS00950 0.51 -0.7
218,296 - DDA3937_RS00950 0.51 -0.6
218,296 - DDA3937_RS00950 0.51 -1.1
218,384 + DDA3937_RS00950 0.59 -0.9
218,384 + DDA3937_RS00950 0.59 -0.4
218,384 + DDA3937_RS00950 0.59 -0.3
218,385 - DDA3937_RS00950 0.59 -0.3
218,415 + DDA3937_RS00950 0.61 -1.9
218,415 + DDA3937_RS00950 0.61 -0.3
218,416 - DDA3937_RS00950 0.62 -0.5
218,416 - DDA3937_RS00950 0.62 -0.0
218,416 - DDA3937_RS00950 0.62 +1.5
218,416 - DDA3937_RS00950 0.62 +0.0
218,416 - DDA3937_RS00950 0.62 -1.0
218,453 + DDA3937_RS00950 0.65 +1.2
218,454 - DDA3937_RS00950 0.65 -0.1
218,493 + DDA3937_RS00950 0.68 +0.3
218,493 + DDA3937_RS00950 0.68 -1.0
218,493 + DDA3937_RS00950 0.68 -0.5
218,526 + DDA3937_RS00950 0.71 -0.6
218,526 + DDA3937_RS00950 0.71 +1.0
218,526 + DDA3937_RS00950 0.71 -0.3
218,526 + DDA3937_RS00950 0.71 +0.3
218,526 + DDA3937_RS00950 0.71 -1.1
218,526 + DDA3937_RS00950 0.71 +0.1
218,526 + DDA3937_RS00950 0.71 -1.6
218,526 + DDA3937_RS00950 0.71 -0.1
218,527 - DDA3937_RS00950 0.71 +0.7
218,527 - DDA3937_RS00950 0.71 +0.3
218,527 - DDA3937_RS00950 0.71 +1.5
218,527 - DDA3937_RS00950 0.71 -0.2
218,527 - DDA3937_RS00950 0.71 -0.6
218,527 - DDA3937_RS00950 0.71 +0.3
218,527 - DDA3937_RS00950 0.71 -1.9
218,527 - DDA3937_RS00950 0.71 +0.2
218,527 - DDA3937_RS00950 0.71 +0.3
218,527 - DDA3937_RS00950 0.71 -0.9
218,527 - DDA3937_RS00950 0.71 -0.4
218,859 + -0.5
218,860 - +0.2
218,860 - -0.5
218,874 + +0.3
218,874 + +0.3
218,968 + +0.5
218,978 + +0.6
219,088 - +0.5
219,160 + DDA3937_RS00955 0.12 +0.7
219,161 - DDA3937_RS00955 0.12 +0.5
219,231 - DDA3937_RS00955 0.15 +1.1
219,231 - DDA3937_RS00955 0.15 +0.9
219,329 - DDA3937_RS00955 0.19 -0.0
219,437 - DDA3937_RS00955 0.24 +0.7
219,445 + DDA3937_RS00955 0.24 +0.9
219,445 + DDA3937_RS00955 0.24 -1.3
219,446 - DDA3937_RS00955 0.24 +0.0
219,500 + DDA3937_RS00955 0.26 -1.5
219,500 + DDA3937_RS00955 0.26 +0.6
219,547 + DDA3937_RS00955 0.28 -1.0
219,547 + DDA3937_RS00955 0.28 +0.9
219,548 - DDA3937_RS00955 0.28 +0.3
219,548 - DDA3937_RS00955 0.28 -0.1
219,548 - DDA3937_RS00955 0.28 +0.4
219,731 + DDA3937_RS00955 0.36 +2.1
219,731 + DDA3937_RS00955 0.36 +0.4
219,731 + DDA3937_RS00955 0.36 +0.6
219,732 - DDA3937_RS00955 0.36 +0.1
219,732 - DDA3937_RS00955 0.36 +0.3
219,956 + DDA3937_RS00955 0.45 +0.7
219,956 + DDA3937_RS00955 0.45 -0.6
219,956 + DDA3937_RS00955 0.45 +1.5
219,956 + DDA3937_RS00955 0.45 +0.4
219,957 - DDA3937_RS00955 0.45 +0.4
220,100 + DDA3937_RS00955 0.51 +0.1
220,254 + DDA3937_RS00955 0.57 -0.4
220,254 + DDA3937_RS00955 0.57 +1.7
220,385 + DDA3937_RS00955 0.62 +0.1
220,386 - DDA3937_RS00955 0.62 -1.1
220,538 + DDA3937_RS00955 0.69 +0.3
220,538 + DDA3937_RS00955 0.69 +0.6
220,539 - DDA3937_RS00955 0.69 -0.1
220,539 - DDA3937_RS00955 0.69 +0.8
220,539 - DDA3937_RS00955 0.69 +1.0
220,613 + DDA3937_RS00955 0.72 -0.6
220,613 + DDA3937_RS00955 0.72 -1.3
220,613 + DDA3937_RS00955 0.72 +1.1
220,614 - DDA3937_RS00955 0.72 +0.2
220,661 + DDA3937_RS00955 0.74 +0.9
220,662 - DDA3937_RS00955 0.74 +0.6
220,662 - -0.9
220,697 + DDA3937_RS00955 0.75 +0.9
220,697 + DDA3937_RS00955 0.75 +2.0
220,697 + DDA3937_RS00955 0.75 +0.1
220,698 - DDA3937_RS00955 0.75 -0.1
220,698 - DDA3937_RS00955 0.75 +0.0
220,698 - DDA3937_RS00955 0.75 +1.9
220,698 - DDA3937_RS00955 0.75 +2.3
220,698 - DDA3937_RS00955 0.75 -0.3
220,698 - DDA3937_RS00955 0.75 +1.4
220,750 + DDA3937_RS00955 0.77 +0.1
220,750 + DDA3937_RS00955 0.77 +2.0
220,808 - DDA3937_RS00955 0.80 +0.3
220,900 + DDA3937_RS00955 0.84 +0.9
221,079 - +2.0
221,115 + -0.2
221,170 + +2.9
221,247 + +0.3
221,414 - +0.0
221,414 - -1.0
221,424 + +0.3
221,424 + -1.3
221,424 + -0.7
221,425 - -1.6
221,425 - -1.5
221,425 - -0.8
221,425 - +0.1
221,425 - +1.4
221,425 - +1.4
221,425 - +0.5
221,432 - +1.0
221,444 + +0.2
221,444 + -2.1
221,444 + +1.9
221,445 - +0.1
221,445 - -0.5
221,445 - +0.2
221,449 - -1.3
221,449 - -0.2
221,526 + +0.1
221,526 + -0.9
221,526 + -0.4
221,611 - -1.6
221,611 - -0.1
221,619 + -0.7
221,620 - +0.3
221,635 + +0.4
221,635 + +1.1
221,636 - -0.4
221,636 - -0.7
221,641 + +0.1
221,642 - -0.8
221,642 - -0.4
221,642 - +0.4
221,697 + +0.4
221,697 + -0.5
221,697 + -0.9
221,711 - -0.6
221,800 + DDA3937_RS00960 0.18 -1.0
221,800 + DDA3937_RS00960 0.18 -0.5
221,801 - DDA3937_RS00960 0.18 +0.4
221,819 + DDA3937_RS00960 0.20 +1.3
221,820 - DDA3937_RS00960 0.20 -0.2
221,820 - DDA3937_RS00960 0.20 +0.4
221,881 + DDA3937_RS00960 0.27 -0.0
221,881 + DDA3937_RS00960 0.27 +0.5
222,019 + DDA3937_RS00960 0.42 +0.5
222,032 + DDA3937_RS00960 0.43 -0.5
222,032 + DDA3937_RS00960 0.43 +0.1
222,032 + DDA3937_RS00960 0.43 -1.0
222,032 + DDA3937_RS00960 0.43 -0.3
222,032 + DDA3937_RS00960 0.43 -1.5
222,032 + DDA3937_RS00960 0.43 +0.2
222,033 - DDA3937_RS00960 0.44 +0.0
222,033 - DDA3937_RS00960 0.44 -0.1
222,033 - DDA3937_RS00960 0.44 -2.3
222,033 - DDA3937_RS00960 0.44 +0.4
222,033 - DDA3937_RS00960 0.44 +0.7
222,033 - DDA3937_RS00960 0.44 -0.5
222,080 - DDA3937_RS00960 0.49 +0.4
222,080 - DDA3937_RS00960 0.49 -0.5
222,080 - DDA3937_RS00960 0.49 -1.0
222,096 - DDA3937_RS00960 0.51 -0.1
222,142 + DDA3937_RS00960 0.56 -1.3
222,143 - DDA3937_RS00960 0.56 -0.6
222,143 - DDA3937_RS00960 0.56 +0.5

Or see this region's nucleotide sequence