Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00860 and DDA3937_RS00865 are separated by 152 nucleotides DDA3937_RS00865 and DDA3937_RS00870 are separated by 141 nucleotides DDA3937_RS00870 and DDA3937_RS00875 are separated by 144 nucleotides
DDA3937_RS00860: DDA3937_RS00860 - alkaline phosphatase, at 199,259 to 200,698
_RS00860
DDA3937_RS00865: DDA3937_RS00865 - triose-phosphate isomerase, at 200,851 to 201,621
_RS00865
DDA3937_RS00870: DDA3937_RS00870 - YiiQ family protein, at 201,763 to 202,359
_RS00870
DDA3937_RS00875: DDA3937_RS00875 - DUF805 domain-containing protein, at 202,504 to 202,929
_RS00875
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.950 kb on + strand, within DDA3937_RS00860 at 200.221 kb on + strand, within DDA3937_RS00860 at 200.222 kb on - strand, within DDA3937_RS00860 at 200.262 kb on + strand, within DDA3937_RS00860 at 200.263 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.419 kb on - strand, within DDA3937_RS00860 at 200.423 kb on - strand, within DDA3937_RS00860 at 200.587 kb on - strand at 200.715 kb on + strand at 200.716 kb on - strand at 200.716 kb on - strand at 200.720 kb on - strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.740 kb on - strand at 200.746 kb on + strand at 200.801 kb on + strand at 201.320 kb on + strand, within DDA3937_RS00865 at 201.650 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.705 kb on + strand at 201.705 kb on + strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.748 kb on + strand at 201.839 kb on + strand, within DDA3937_RS00870 at 201.839 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.867 kb on - strand, within DDA3937_RS00870 at 201.942 kb on + strand, within DDA3937_RS00870 at 201.943 kb on - strand, within DDA3937_RS00870 at 201.968 kb on + strand, within DDA3937_RS00870 at 201.969 kb on - strand, within DDA3937_RS00870 at 202.029 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.046 kb on - strand, within DDA3937_RS00870 at 202.082 kb on + strand, within DDA3937_RS00870 at 202.083 kb on - strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.191 kb on - strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.313 kb on - strand at 202.368 kb on + strand at 202.368 kb on + strand at 202.369 kb on - strand at 202.369 kb on - strand at 202.371 kb on + strand at 202.372 kb on - strand at 202.372 kb on - strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.382 kb on - strand at 202.382 kb on - strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.460 kb on - strand at 202.460 kb on - strand at 202.464 kb on + strand at 202.465 kb on - strand at 202.465 kb on - strand at 202.478 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 199,950 + DDA3937_RS00860 0.48 +0.6 200,221 + DDA3937_RS00860 0.67 -0.2 200,222 - DDA3937_RS00860 0.67 -0.1 200,262 + DDA3937_RS00860 0.70 -1.1 200,263 - DDA3937_RS00860 0.70 -0.2 200,317 - DDA3937_RS00860 0.73 -2.3 200,317 - DDA3937_RS00860 0.73 -0.0 200,359 - DDA3937_RS00860 0.76 -0.1 200,359 - DDA3937_RS00860 0.76 -0.2 200,359 - DDA3937_RS00860 0.76 -0.9 200,418 + DDA3937_RS00860 0.80 +0.1 200,418 + DDA3937_RS00860 0.80 +0.3 200,419 - DDA3937_RS00860 0.81 -0.7 200,423 - DDA3937_RS00860 0.81 -0.4 200,587 - +1.1 200,715 + -1.2 200,716 - +0.0 200,716 - +0.4 200,720 - -0.4 200,726 + -1.3 200,726 + +0.4 200,726 + +1.1 200,727 - -0.1 200,727 - -0.1 200,727 - +0.9 200,727 - +0.1 200,727 - +0.6 200,740 - -0.2 200,746 + -0.5 200,801 + -1.4 201,320 + DDA3937_RS00865 0.61 -0.8 201,650 - -0.1 201,657 - -0.3 201,657 - -1.4 201,657 - -0.2 201,657 - +0.7 201,691 + -1.3 201,692 - +0.2 201,705 + +0.7 201,705 + -0.2 201,706 - +0.8 201,706 - -0.7 201,706 - -0.6 201,708 + -0.9 201,708 + -0.9 201,708 + +0.3 201,708 + +0.7 201,708 + +0.4 201,708 + -0.1 201,708 + -0.6 201,708 + -1.1 201,709 - -0.7 201,709 - +0.5 201,709 - -0.3 201,709 - -0.0 201,709 - +0.1 201,709 - +0.7 201,710 + +0.5 201,710 + -1.9 201,710 + +0.4 201,710 + +1.7 201,711 - +0.8 201,711 - -0.2 201,711 - -0.1 201,711 - +0.8 201,748 + +0.5 201,839 + DDA3937_RS00870 0.13 +0.7 201,839 + DDA3937_RS00870 0.13 -0.7 201,866 + DDA3937_RS00870 0.17 +1.2 201,866 + DDA3937_RS00870 0.17 +0.3 201,867 - DDA3937_RS00870 0.17 -0.7 201,942 + DDA3937_RS00870 0.30 +0.3 201,943 - DDA3937_RS00870 0.30 -0.4 201,968 + DDA3937_RS00870 0.34 -1.0 201,969 - DDA3937_RS00870 0.35 +0.4 202,029 + DDA3937_RS00870 0.45 -0.9 202,045 + DDA3937_RS00870 0.47 -0.1 202,045 + DDA3937_RS00870 0.47 -1.2 202,046 - DDA3937_RS00870 0.47 -0.3 202,082 + DDA3937_RS00870 0.53 +0.5 202,083 - DDA3937_RS00870 0.54 +1.2 202,190 + DDA3937_RS00870 0.72 +0.4 202,190 + DDA3937_RS00870 0.72 +0.1 202,191 - DDA3937_RS00870 0.72 -0.2 202,207 + DDA3937_RS00870 0.74 +0.5 202,207 + DDA3937_RS00870 0.74 -0.0 202,207 + DDA3937_RS00870 0.74 +0.2 202,207 + DDA3937_RS00870 0.74 +0.0 202,207 + DDA3937_RS00870 0.74 -0.9 202,208 - DDA3937_RS00870 0.75 +2.5 202,208 - DDA3937_RS00870 0.75 -0.1 202,208 - DDA3937_RS00870 0.75 +0.5 202,208 - DDA3937_RS00870 0.75 -0.7 202,313 - -0.3 202,368 + +1.4 202,368 + +1.4 202,369 - +0.5 202,369 - -0.2 202,371 + +0.5 202,372 - +0.1 202,372 - -1.4 202,381 + +1.3 202,381 + -1.1 202,381 + +0.1 202,382 - -0.9 202,382 - -0.9 202,459 + -0.5 202,459 + +1.1 202,459 + -0.6 202,460 - -0.4 202,460 - +1.1 202,464 + -0.1 202,465 - +1.7 202,465 - +0.5 202,478 - -0.7 202,512 - -0.4 202,512 - -1.4 202,512 - +0.7 202,512 - -0.6
Or see this region's nucleotide sequence