Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00850

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00845 and DDA3937_RS00850 are separated by 335 nucleotidesDDA3937_RS00850 and DDA3937_RS00855 are separated by 3 nucleotides DDA3937_RS00845: DDA3937_RS00845 - 6-phosphofructokinase, at 195,878 to 196,840 _RS00845 DDA3937_RS00850: DDA3937_RS00850 - N-carbamoylputrescine amidase, at 197,176 to 198,060 _RS00850 DDA3937_RS00855: DDA3937_RS00855 - agmatine deiminase, at 198,064 to 199,164 _RS00855 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.196 kb on + strand, within DDA3937_RS00845at 196.196 kb on + strand, within DDA3937_RS00845at 196.197 kb on - strand, within DDA3937_RS00845at 196.578 kb on - strandat 196.766 kb on - strandat 196.901 kb on + strandat 196.901 kb on + strandat 196.902 kb on - strandat 197.022 kb on + strandat 197.113 kb on + strandat 197.113 kb on + strandat 197.114 kb on - strandat 197.116 kb on + strandat 197.117 kb on - strandat 197.152 kb on + strandat 197.153 kb on - strandat 197.153 kb on - strandat 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.350 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.465 kb on - strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.468 kb on - strand, within DDA3937_RS00850at 197.516 kb on - strand, within DDA3937_RS00850at 197.618 kb on + strand, within DDA3937_RS00850at 197.619 kb on - strand, within DDA3937_RS00850at 197.766 kb on - strand, within DDA3937_RS00850at 197.839 kb on + strand, within DDA3937_RS00850at 197.840 kb on - strand, within DDA3937_RS00850at 197.840 kb on - strandat 197.840 kb on - strand, within DDA3937_RS00850at 197.866 kb on + strand, within DDA3937_RS00850at 197.866 kb on + strand, within DDA3937_RS00850at 197.867 kb on - strand, within DDA3937_RS00850at 197.867 kb on - strand, within DDA3937_RS00850at 198.019 kb on + strandat 198.019 kb on + strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.027 kb on - strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.257 kb on + strand, within DDA3937_RS00855at 198.395 kb on + strand, within DDA3937_RS00855at 198.439 kb on + strand, within DDA3937_RS00855at 198.439 kb on + strand, within DDA3937_RS00855at 198.440 kb on - strand, within DDA3937_RS00855at 198.440 kb on - strand, within DDA3937_RS00855at 198.506 kb on - strand, within DDA3937_RS00855at 198.506 kb on - strand, within DDA3937_RS00855at 198.646 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.691 kb on - strand, within DDA3937_RS00855at 198.787 kb on + strand, within DDA3937_RS00855at 198.788 kb on - strand, within DDA3937_RS00855at 198.808 kb on + strand, within DDA3937_RS00855at 198.809 kb on - strand, within DDA3937_RS00855at 198.886 kb on + strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.940 kb on - strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 199.003 kb on + strand, within DDA3937_RS00855at 199.003 kb on + strand, within DDA3937_RS00855at 199.004 kb on - strand, within DDA3937_RS00855at 199.004 kb on - strand, within DDA3937_RS00855

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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196,196 + DDA3937_RS00845 0.33 -0.9
196,196 + DDA3937_RS00845 0.33 +0.7
196,197 - DDA3937_RS00845 0.33 -2.3
196,578 - -0.3
196,766 - -1.6
196,901 + -0.4
196,901 + +0.3
196,902 - -0.3
197,022 + +0.9
197,113 + -0.2
197,113 + -1.3
197,114 - -0.7
197,116 + +0.7
197,117 - +1.5
197,152 + -0.6
197,153 - +0.3
197,153 - +0.2
197,320 + DDA3937_RS00850 0.16 +0.3
197,320 + DDA3937_RS00850 0.16 -0.8
197,320 + DDA3937_RS00850 0.16 +0.2
197,321 - DDA3937_RS00850 0.16 -1.1
197,321 - DDA3937_RS00850 0.16 +0.5
197,321 - DDA3937_RS00850 0.16 +0.8
197,350 + DDA3937_RS00850 0.20 -0.1
197,464 + DDA3937_RS00850 0.33 +0.6
197,464 + DDA3937_RS00850 0.33 +1.1
197,464 + DDA3937_RS00850 0.33 -0.7
197,465 - DDA3937_RS00850 0.33 -0.5
197,467 + DDA3937_RS00850 0.33 +0.1
197,467 + DDA3937_RS00850 0.33 +0.8
197,468 - DDA3937_RS00850 0.33 -0.3
197,516 - DDA3937_RS00850 0.38 +0.8
197,618 + DDA3937_RS00850 0.50 +0.7
197,619 - DDA3937_RS00850 0.50 +0.3
197,766 - DDA3937_RS00850 0.67 +0.0
197,839 + DDA3937_RS00850 0.75 -0.1
197,840 - DDA3937_RS00850 0.75 +0.7
197,840 - +0.7
197,840 - DDA3937_RS00850 0.75 -0.6
197,866 + DDA3937_RS00850 0.78 +0.8
197,866 + DDA3937_RS00850 0.78 -0.0
197,867 - DDA3937_RS00850 0.78 -0.1
197,867 - DDA3937_RS00850 0.78 +0.1
198,019 + +0.8
198,019 + -0.3
198,020 - -1.9
198,020 - -2.1
198,020 - -1.4
198,020 - +0.7
198,020 - +0.1
198,020 - +0.4
198,027 - -0.6
198,058 + +0.1
198,058 + +0.3
198,058 + +0.3
198,058 + +0.0
198,059 - +0.2
198,059 - -0.6
198,059 - -0.3
198,059 - -0.3
198,059 - -0.7
198,059 - +0.5
198,257 + DDA3937_RS00855 0.18 -0.3
198,395 + DDA3937_RS00855 0.30 -0.4
198,439 + DDA3937_RS00855 0.34 +1.4
198,439 + DDA3937_RS00855 0.34 -0.3
198,440 - DDA3937_RS00855 0.34 -0.3
198,440 - DDA3937_RS00855 0.34 -0.0
198,506 - DDA3937_RS00855 0.40 -0.9
198,506 - DDA3937_RS00855 0.40 -0.3
198,646 + DDA3937_RS00855 0.53 -0.3
198,688 + DDA3937_RS00855 0.57 -0.5
198,688 + DDA3937_RS00855 0.57 +0.5
198,688 + DDA3937_RS00855 0.57 +0.4
198,688 + DDA3937_RS00855 0.57 +0.0
198,689 - DDA3937_RS00855 0.57 +0.3
198,689 - DDA3937_RS00855 0.57 -0.3
198,689 - DDA3937_RS00855 0.57 -0.0
198,689 - DDA3937_RS00855 0.57 +0.8
198,689 - DDA3937_RS00855 0.57 +0.0
198,689 - DDA3937_RS00855 0.57 -1.3
198,691 - DDA3937_RS00855 0.57 -0.1
198,787 + DDA3937_RS00855 0.66 -0.7
198,788 - DDA3937_RS00855 0.66 +0.6
198,808 + DDA3937_RS00855 0.68 +0.6
198,809 - DDA3937_RS00855 0.68 -1.6
198,886 + DDA3937_RS00855 0.75 -1.7
198,887 - DDA3937_RS00855 0.75 +0.5
198,887 - DDA3937_RS00855 0.75 +0.3
198,887 - DDA3937_RS00855 0.75 +0.4
198,940 - DDA3937_RS00855 0.80 +0.3
198,967 + DDA3937_RS00855 0.82 +0.2
198,967 + DDA3937_RS00855 0.82 -1.2
198,967 + DDA3937_RS00855 0.82 -0.2
198,967 + DDA3937_RS00855 0.82 -0.2
198,967 + DDA3937_RS00855 0.82 +0.6
198,967 + DDA3937_RS00855 0.82 +0.3
198,967 + DDA3937_RS00855 0.82 +0.1
198,968 - DDA3937_RS00855 0.82 +0.3
198,968 - DDA3937_RS00855 0.82 +0.2
198,968 - DDA3937_RS00855 0.82 -1.2
198,968 - DDA3937_RS00855 0.82 +0.2
198,968 - DDA3937_RS00855 0.82 +0.5
198,968 - DDA3937_RS00855 0.82 +0.7
198,968 - DDA3937_RS00855 0.82 -0.9
199,003 + DDA3937_RS00855 0.85 +0.7
199,003 + DDA3937_RS00855 0.85 +0.7
199,004 - DDA3937_RS00855 0.85 -0.5
199,004 - DDA3937_RS00855 0.85 +0.7

Or see this region's nucleotide sequence