Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00755 and DDA3937_RS00760 are separated by 54 nucleotides DDA3937_RS00760 and DDA3937_RS00765 are separated by 35 nucleotides DDA3937_RS00765 and DDA3937_RS00770 overlap by 31 nucleotides
DDA3937_RS00755: DDA3937_RS00755 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 177,824 to 178,288
_RS00755
DDA3937_RS00760: DDA3937_RS00760 - hypothetical protein, at 178,343 to 178,933
_RS00760
DDA3937_RS00765: DDA3937_RS00765 - DUF3142 domain-containing protein, at 178,969 to 179,742
_RS00765
DDA3937_RS00770: DDA3937_RS00770 - hypothetical protein, at 179,712 to 181,913
_RS00770
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.079 kb on + strand, within DDA3937_RS00755 at 178.094 kb on + strand, within DDA3937_RS00755 at 178.150 kb on + strand at 178.151 kb on - strand, within DDA3937_RS00755 at 178.247 kb on + strand at 178.493 kb on + strand, within DDA3937_RS00760 at 178.660 kb on + strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.872 kb on + strand, within DDA3937_RS00760 at 178.872 kb on + strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.906 kb on + strand at 178.907 kb on - strand at 178.970 kb on + strand at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.145 kb on - strand, within DDA3937_RS00765 at 179.166 kb on + strand, within DDA3937_RS00765 at 179.166 kb on + strand, within DDA3937_RS00765 at 179.167 kb on - strand, within DDA3937_RS00765 at 179.167 kb on - strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.181 kb on - strand, within DDA3937_RS00765 at 179.207 kb on - strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.328 kb on - strand, within DDA3937_RS00765 at 179.343 kb on - strand, within DDA3937_RS00765 at 179.343 kb on - strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.428 kb on + strand, within DDA3937_RS00765 at 179.429 kb on - strand, within DDA3937_RS00765 at 179.567 kb on + strand, within DDA3937_RS00765 at 179.568 kb on - strand, within DDA3937_RS00765 at 179.568 kb on - strand, within DDA3937_RS00765 at 179.587 kb on + strand, within DDA3937_RS00765 at 179.587 kb on + strand at 179.588 kb on - strand, within DDA3937_RS00765 at 179.695 kb on + strand at 179.695 kb on + strand at 179.696 kb on - strand at 179.696 kb on - strand at 179.703 kb on + strand at 179.703 kb on + strand at 179.704 kb on - strand at 179.704 kb on - strand at 179.713 kb on + strand at 179.713 kb on + strand at 179.714 kb on - strand at 179.719 kb on + strand at 179.719 kb on + strand at 179.720 kb on - strand at 179.720 kb on - strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.753 kb on + strand at 179.753 kb on + strand at 179.804 kb on + strand at 179.827 kb on + strand at 179.828 kb on - strand at 179.828 kb on - strand at 179.828 kb on - strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.869 kb on + strand at 179.917 kb on + strand at 179.917 kb on + strand at 179.917 kb on + strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.954 kb on - strand, within DDA3937_RS00770 at 179.954 kb on - strand, within DDA3937_RS00770 at 179.954 kb on - strand, within DDA3937_RS00770 at 179.984 kb on + strand, within DDA3937_RS00770 at 179.984 kb on + strand, within DDA3937_RS00770 at 179.984 kb on + strand, within DDA3937_RS00770 at 179.985 kb on - strand, within DDA3937_RS00770 at 179.985 kb on - strand, within DDA3937_RS00770 at 180.118 kb on + strand at 180.153 kb on + strand, within DDA3937_RS00770 at 180.154 kb on - strand, within DDA3937_RS00770 at 180.276 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand at 180.484 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand, within DDA3937_RS00770 at 180.484 kb on + strand, within DDA3937_RS00770 at 180.485 kb on - strand, within DDA3937_RS00770 at 180.485 kb on - strand, within DDA3937_RS00770 at 180.485 kb on - strand, within DDA3937_RS00770 at 180.485 kb on - strand, within DDA3937_RS00770 at 180.570 kb on + strand, within DDA3937_RS00770 at 180.571 kb on - strand, within DDA3937_RS00770 at 180.647 kb on - strand, within DDA3937_RS00770 at 180.661 kb on + strand, within DDA3937_RS00770 at 180.662 kb on - strand, within DDA3937_RS00770 at 180.664 kb on + strand, within DDA3937_RS00770 at 180.665 kb on - strand, within DDA3937_RS00770 at 180.665 kb on - strand, within DDA3937_RS00770 at 180.665 kb on - strand, within DDA3937_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 178,010 + DDA3937_RS00755 0.40 -0.3 178,010 + DDA3937_RS00755 0.40 -0.7 178,011 - DDA3937_RS00755 0.40 -0.1 178,011 - DDA3937_RS00755 0.40 -0.2 178,079 + DDA3937_RS00755 0.55 -0.4 178,094 + DDA3937_RS00755 0.58 +1.1 178,150 + -0.9 178,151 - DDA3937_RS00755 0.70 -0.3 178,247 + -0.5 178,493 + DDA3937_RS00760 0.25 +0.9 178,660 + DDA3937_RS00760 0.54 -0.9 178,661 - DDA3937_RS00760 0.54 -1.0 178,661 - DDA3937_RS00760 0.54 +0.1 178,661 - DDA3937_RS00760 0.54 -0.9 178,872 + DDA3937_RS00760 0.90 +1.7 178,872 + DDA3937_RS00760 0.90 -0.1 178,873 - DDA3937_RS00760 0.90 -0.9 178,873 - DDA3937_RS00760 0.90 -0.0 178,873 - DDA3937_RS00760 0.90 -0.2 178,873 - DDA3937_RS00760 0.90 +0.2 178,873 - DDA3937_RS00760 0.90 +0.1 178,906 + -0.4 178,907 - +0.3 178,970 + -1.8 179,085 + DDA3937_RS00765 0.15 -0.3 179,085 + DDA3937_RS00765 0.15 +0.4 179,085 + DDA3937_RS00765 0.15 -0.3 179,085 + DDA3937_RS00765 0.15 -1.5 179,085 + DDA3937_RS00765 0.15 -0.1 179,086 - DDA3937_RS00765 0.15 -0.4 179,086 - DDA3937_RS00765 0.15 +0.4 179,086 - DDA3937_RS00765 0.15 +1.0 179,086 - DDA3937_RS00765 0.15 +0.6 179,145 - DDA3937_RS00765 0.23 -0.2 179,166 + DDA3937_RS00765 0.25 +0.5 179,166 + DDA3937_RS00765 0.25 +0.7 179,167 - DDA3937_RS00765 0.26 +0.5 179,167 - DDA3937_RS00765 0.26 -2.9 179,180 + DDA3937_RS00765 0.27 +2.0 179,180 + DDA3937_RS00765 0.27 -0.0 179,180 + DDA3937_RS00765 0.27 +0.1 179,181 - DDA3937_RS00765 0.27 +0.5 179,207 - DDA3937_RS00765 0.31 +0.6 179,327 + DDA3937_RS00765 0.46 +0.1 179,327 + DDA3937_RS00765 0.46 -0.8 179,327 + DDA3937_RS00765 0.46 -1.3 179,327 + DDA3937_RS00765 0.46 +0.7 179,327 + DDA3937_RS00765 0.46 +0.8 179,327 + DDA3937_RS00765 0.46 +1.1 179,328 - DDA3937_RS00765 0.46 -0.3 179,343 - DDA3937_RS00765 0.48 +1.0 179,343 - DDA3937_RS00765 0.48 +0.1 179,410 + DDA3937_RS00765 0.57 -0.5 179,410 + DDA3937_RS00765 0.57 +0.1 179,410 + DDA3937_RS00765 0.57 -0.3 179,410 + DDA3937_RS00765 0.57 +0.8 179,410 + DDA3937_RS00765 0.57 -0.3 179,411 - DDA3937_RS00765 0.57 -0.9 179,411 - DDA3937_RS00765 0.57 -1.0 179,411 - DDA3937_RS00765 0.57 +0.3 179,428 + DDA3937_RS00765 0.59 +0.6 179,429 - DDA3937_RS00765 0.59 -0.0 179,567 + DDA3937_RS00765 0.77 +1.2 179,568 - DDA3937_RS00765 0.77 +0.2 179,568 - DDA3937_RS00765 0.77 -1.4 179,587 + DDA3937_RS00765 0.80 -0.0 179,587 + -0.9 179,588 - DDA3937_RS00765 0.80 +0.4 179,695 + -0.4 179,695 + -0.9 179,696 - +0.1 179,696 - -1.5 179,703 + -0.1 179,703 + +0.4 179,704 - -0.0 179,704 - +0.7 179,713 + +0.4 179,713 + +0.2 179,714 - -0.9 179,719 + +0.8 179,719 + +0.9 179,720 - +0.0 179,720 - +0.4 179,722 + -0.0 179,722 + +0.8 179,722 + -0.7 179,722 + +0.3 179,723 - -1.1 179,723 - +0.1 179,723 - -1.3 179,723 - -0.6 179,723 - +1.1 179,753 + -0.2 179,753 + -0.2 179,804 + -0.2 179,827 + -0.5 179,828 - -0.4 179,828 - +0.2 179,828 - -0.4 179,848 + -1.2 179,848 + +0.7 179,848 + +0.2 179,848 + +0.1 179,848 + +0.3 179,848 + +0.1 179,848 + -0.9 179,848 + +0.6 179,849 - -0.3 179,849 - +0.2 179,849 - -0.3 179,849 - -0.5 179,849 - -0.1 179,849 - +1.1 179,869 + +0.6 179,917 + -0.4 179,917 + +0.4 179,917 + +0.1 179,918 - -1.3 179,918 - +0.6 179,918 - +0.6 179,918 - -0.9 179,918 - -0.5 179,918 - +0.3 179,918 - -1.0 179,918 - -0.1 179,918 - -0.4 179,918 - +0.2 179,954 - DDA3937_RS00770 0.11 +0.1 179,954 - DDA3937_RS00770 0.11 -1.1 179,954 - DDA3937_RS00770 0.11 -1.2 179,984 + DDA3937_RS00770 0.12 -0.6 179,984 + DDA3937_RS00770 0.12 +1.0 179,984 + DDA3937_RS00770 0.12 +0.2 179,985 - DDA3937_RS00770 0.12 -0.0 179,985 - DDA3937_RS00770 0.12 +0.1 180,118 + -1.6 180,153 + DDA3937_RS00770 0.20 -1.0 180,154 - DDA3937_RS00770 0.20 +0.7 180,276 + DDA3937_RS00770 0.26 -0.1 180,484 + DDA3937_RS00770 0.35 -0.2 180,484 + DDA3937_RS00770 0.35 +0.7 180,484 + +0.7 180,484 + DDA3937_RS00770 0.35 -0.9 180,484 + DDA3937_RS00770 0.35 -0.3 180,484 + DDA3937_RS00770 0.35 +0.7 180,484 + DDA3937_RS00770 0.35 +1.4 180,485 - DDA3937_RS00770 0.35 -0.2 180,485 - DDA3937_RS00770 0.35 -0.4 180,485 - DDA3937_RS00770 0.35 +0.7 180,485 - DDA3937_RS00770 0.35 -0.4 180,570 + DDA3937_RS00770 0.39 -0.1 180,571 - DDA3937_RS00770 0.39 -1.6 180,647 - DDA3937_RS00770 0.42 -1.3 180,661 + DDA3937_RS00770 0.43 +0.4 180,662 - DDA3937_RS00770 0.43 +0.1 180,664 + DDA3937_RS00770 0.43 -1.0 180,665 - DDA3937_RS00770 0.43 +0.6 180,665 - DDA3937_RS00770 0.43 +0.3 180,665 - DDA3937_RS00770 0.43 +1.0
Or see this region's nucleotide sequence