Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00710 and DDA3937_RS00715 are separated by 466 nucleotides
DDA3937_RS00710: DDA3937_RS00710 - MCP four helix bundle domain-containing protein, at 166,251 to 167,912
_RS00710
DDA3937_RS00715: DDA3937_RS00715 - MCP four helix bundle domain-containing protein, at 168,379 to 170,061
_RS00715
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.614 kb on - strand, within DDA3937_RS00710 at 167.633 kb on + strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.645 kb on + strand, within DDA3937_RS00710 at 167.646 kb on - strand, within DDA3937_RS00710 at 167.667 kb on + strand, within DDA3937_RS00710 at 167.730 kb on - strand, within DDA3937_RS00710 at 167.746 kb on - strand at 167.825 kb on - strand at 167.825 kb on - strand at 167.828 kb on + strand at 167.829 kb on - strand at 167.829 kb on - strand at 167.846 kb on + strand at 167.846 kb on + strand at 167.883 kb on - strand at 167.885 kb on + strand at 167.886 kb on - strand at 167.900 kb on + strand at 167.904 kb on - strand at 167.932 kb on - strand at 167.992 kb on - strand at 168.040 kb on + strand at 168.040 kb on + strand at 168.041 kb on - strand at 168.132 kb on + strand at 168.137 kb on - strand at 168.168 kb on + strand at 168.187 kb on + strand at 168.375 kb on - strand at 168.489 kb on + strand at 168.495 kb on + strand at 168.495 kb on + strand at 168.496 kb on - strand at 168.511 kb on + strand at 168.511 kb on + strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.633 kb on + strand, within DDA3937_RS00715 at 168.633 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.698 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 169.243 kb on + strand, within DDA3937_RS00715 at 169.244 kb on - strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.519 kb on + strand, within DDA3937_RS00715 at 169.520 kb on - strand, within DDA3937_RS00715 at 169.612 kb on + strand, within DDA3937_RS00715 at 169.669 kb on - strand, within DDA3937_RS00715 at 169.738 kb on - strand, within DDA3937_RS00715 at 169.846 kb on - strand, within DDA3937_RS00715 at 169.846 kb on - strand, within DDA3937_RS00715 at 169.905 kb on + strand at 169.905 kb on + strand at 169.905 kb on + strand at 169.906 kb on - strand at 169.906 kb on - strand at 169.982 kb on - strand at 170.061 kb on + strand at 170.061 kb on + strand at 170.061 kb on + strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.082 kb on - strand at 170.082 kb on - strand at 170.117 kb on + strand at 170.128 kb on + strand at 170.135 kb on - strand at 170.135 kb on - strand at 170.135 kb on - strand at 170.143 kb on - strand at 170.144 kb on + strand at 170.161 kb on - strand at 170.194 kb on + strand at 170.232 kb on - strand at 170.240 kb on - strand at 170.248 kb on + strand at 170.249 kb on - strand at 170.269 kb on + strand at 170.287 kb on - strand at 170.310 kb on + strand at 170.333 kb on - strand at 170.387 kb on - strand at 170.526 kb on - strand at 170.526 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.559 kb on - strand at 170.565 kb on + strand at 170.566 kb on - strand at 170.618 kb on + strand at 170.619 kb on - strand at 170.619 kb on - strand at 170.621 kb on - strand at 170.621 kb on - strand at 170.621 kb on - strand at 170.654 kb on - strand at 170.695 kb on + strand at 170.696 kb on - strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.813 kb on - strand at 170.842 kb on - strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.954 kb on - strand at 170.954 kb on - strand at 171.015 kb on + strand at 171.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 167,405 - DDA3937_RS00710 0.69 +0.1 167,405 - DDA3937_RS00710 0.69 -0.4 167,434 + DDA3937_RS00710 0.71 +0.5 167,434 + DDA3937_RS00710 0.71 -0.9 167,434 + DDA3937_RS00710 0.71 +0.2 167,434 + DDA3937_RS00710 0.71 +1.7 167,434 + DDA3937_RS00710 0.71 -0.2 167,556 + DDA3937_RS00710 0.79 -1.7 167,556 + DDA3937_RS00710 0.79 -0.8 167,556 + DDA3937_RS00710 0.79 -0.8 167,556 + DDA3937_RS00710 0.79 -0.3 167,557 - DDA3937_RS00710 0.79 -1.8 167,557 - DDA3937_RS00710 0.79 -1.0 167,557 - DDA3937_RS00710 0.79 -0.4 167,557 - DDA3937_RS00710 0.79 +1.1 167,557 - DDA3937_RS00710 0.79 +0.7 167,614 - DDA3937_RS00710 0.82 -0.2 167,633 + DDA3937_RS00710 0.83 -0.9 167,634 - DDA3937_RS00710 0.83 -0.5 167,634 - DDA3937_RS00710 0.83 -0.2 167,634 - DDA3937_RS00710 0.83 +0.4 167,645 + DDA3937_RS00710 0.84 -2.2 167,646 - DDA3937_RS00710 0.84 -1.3 167,667 + DDA3937_RS00710 0.85 -1.5 167,730 - DDA3937_RS00710 0.89 +1.2 167,746 - -1.0 167,825 - +1.7 167,825 - +0.1 167,828 + +1.0 167,829 - -0.3 167,829 - +0.1 167,846 + -1.1 167,846 + +0.1 167,883 - -0.3 167,885 + -1.0 167,886 - -0.1 167,900 + +2.3 167,904 - -0.5 167,932 - -0.3 167,992 - -0.6 168,040 + +1.5 168,040 + -0.6 168,041 - -2.6 168,132 + -2.1 168,137 - -0.5 168,168 + -0.4 168,187 + -0.4 168,375 - -0.5 168,489 + +0.7 168,495 + +0.1 168,495 + +0.4 168,496 - -0.4 168,511 + -0.3 168,511 + -1.3 168,512 - -0.7 168,512 - +0.1 168,512 - -0.7 168,512 - -0.4 168,512 - +0.2 168,512 - -2.8 168,633 + DDA3937_RS00715 0.15 -0.3 168,633 + DDA3937_RS00715 0.15 -2.1 168,697 + DDA3937_RS00715 0.19 +1.4 168,697 + DDA3937_RS00715 0.19 -0.5 168,698 - DDA3937_RS00715 0.19 +0.1 168,994 - DDA3937_RS00715 0.37 +0.3 168,994 - DDA3937_RS00715 0.37 -0.9 168,994 - DDA3937_RS00715 0.37 +1.0 169,243 + DDA3937_RS00715 0.51 +1.1 169,244 - DDA3937_RS00715 0.51 -0.3 169,477 + DDA3937_RS00715 0.65 -0.1 169,477 + DDA3937_RS00715 0.65 +0.3 169,477 + DDA3937_RS00715 0.65 -0.8 169,519 + DDA3937_RS00715 0.68 +0.3 169,520 - DDA3937_RS00715 0.68 +0.2 169,612 + DDA3937_RS00715 0.73 -1.0 169,669 - DDA3937_RS00715 0.77 +1.0 169,738 - DDA3937_RS00715 0.81 +1.2 169,846 - DDA3937_RS00715 0.87 +0.1 169,846 - DDA3937_RS00715 0.87 +1.3 169,905 + -1.3 169,905 + -1.2 169,905 + +0.9 169,906 - +0.4 169,906 - +0.0 169,982 - -0.6 170,061 + -0.6 170,061 + +1.7 170,061 + +0.5 170,062 - -3.0 170,062 - +0.6 170,062 - -1.5 170,062 - -0.3 170,082 - -1.0 170,082 - -0.2 170,117 + -0.5 170,128 + -1.0 170,135 - +0.4 170,135 - -0.1 170,135 - -0.2 170,143 - +0.5 170,144 + +0.6 170,161 - +0.1 170,194 + +0.6 170,232 - +0.5 170,240 - +0.1 170,248 + +0.3 170,249 - -0.6 170,269 + -0.3 170,287 - -1.9 170,310 + -0.5 170,333 - -0.4 170,387 - -0.7 170,526 - +0.7 170,526 - -0.9 170,556 - +0.4 170,556 - -1.5 170,556 - -0.3 170,559 - -0.5 170,565 + -0.0 170,566 - +0.7 170,618 + -1.3 170,619 - -0.0 170,619 - -1.6 170,621 - +0.5 170,621 - +0.5 170,621 - -0.4 170,654 - +0.0 170,695 + +0.0 170,696 - -1.1 170,704 + +0.2 170,704 + +0.5 170,704 + -0.1 170,704 + -0.0 170,708 + -0.5 170,708 + -0.0 170,708 + +0.1 170,708 + +0.7 170,708 + -0.9 170,709 - -0.2 170,709 - -0.3 170,709 - +0.2 170,709 - -0.3 170,813 - +0.3 170,842 - -1.6 170,953 + +0.1 170,953 + +2.3 170,953 + -0.0 170,953 + -0.0 170,954 - -0.1 170,954 - -0.2 171,015 + +0.4 171,028 + -1.3
Or see this region's nucleotide sequence