Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00675

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00670 and DDA3937_RS00675 overlap by 4 nucleotidesDDA3937_RS00675 and DDA3937_RS00680 are separated by 6 nucleotidesDDA3937_RS00680 and DDA3937_RS00685 are separated by 70 nucleotides DDA3937_RS00670: DDA3937_RS00670 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 154,196 to 155,470 _RS00670 DDA3937_RS00675: DDA3937_RS00675 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 155,467 to 156,237 _RS00675 DDA3937_RS00680: DDA3937_RS00680 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 156,244 to 156,945 _RS00680 DDA3937_RS00685: DDA3937_RS00685 - PLP-dependent aminotransferase family protein, at 157,016 to 158,200 _RS00685 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2at 154.556 kb on + strand, within DDA3937_RS00670at 154.556 kb on + strand, within DDA3937_RS00670at 154.557 kb on - strand, within DDA3937_RS00670at 154.620 kb on - strand, within DDA3937_RS00670at 154.631 kb on + strand, within DDA3937_RS00670at 154.647 kb on - strand, within DDA3937_RS00670at 154.647 kb on - strand, within DDA3937_RS00670at 154.647 kb on - strand, within DDA3937_RS00670at 154.647 kb on - strand, within DDA3937_RS00670at 154.652 kb on + strand, within DDA3937_RS00670at 154.652 kb on + strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.653 kb on - strand, within DDA3937_RS00670at 154.670 kb on + strand, within DDA3937_RS00670at 154.670 kb on + strand, within DDA3937_RS00670at 154.671 kb on - strand, within DDA3937_RS00670at 154.671 kb on - strand, within DDA3937_RS00670at 154.673 kb on + strand, within DDA3937_RS00670at 154.673 kb on + strand, within DDA3937_RS00670at 154.673 kb on + strand, within DDA3937_RS00670at 154.673 kb on + strand, within DDA3937_RS00670at 154.674 kb on - strand, within DDA3937_RS00670at 154.674 kb on - strand, within DDA3937_RS00670at 154.772 kb on + strand, within DDA3937_RS00670at 154.773 kb on - strand, within DDA3937_RS00670at 154.813 kb on + strand, within DDA3937_RS00670at 154.813 kb on + strand, within DDA3937_RS00670at 154.814 kb on - strand, within DDA3937_RS00670at 154.814 kb on - strand, within DDA3937_RS00670at 154.822 kb on - strand, within DDA3937_RS00670at 154.931 kb on - strand, within DDA3937_RS00670at 154.958 kb on + strand, within DDA3937_RS00670at 154.958 kb on + strand, within DDA3937_RS00670at 154.958 kb on + strand, within DDA3937_RS00670at 154.959 kb on - strand, within DDA3937_RS00670at 154.959 kb on - strand, within DDA3937_RS00670at 154.959 kb on - strand, within DDA3937_RS00670at 154.959 kb on - strand, within DDA3937_RS00670at 154.979 kb on - strand, within DDA3937_RS00670at 154.979 kb on - strand, within DDA3937_RS00670at 154.979 kb on - strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.988 kb on + strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.989 kb on - strand, within DDA3937_RS00670at 154.990 kb on + strand, within DDA3937_RS00670at 154.990 kb on + strand, within DDA3937_RS00670at 154.990 kb on + strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 154.991 kb on - strand, within DDA3937_RS00670at 155.259 kb on + strand, within DDA3937_RS00670at 155.260 kb on - strand, within DDA3937_RS00670at 155.348 kb on + strandat 155.349 kb on - strandat 155.349 kb on - strandat 155.483 kb on + strandat 155.484 kb on - strandat 155.897 kb on + strand, within DDA3937_RS00675at 155.897 kb on + strand, within DDA3937_RS00675at 155.897 kb on + strand, within DDA3937_RS00675at 155.897 kb on + strand, within DDA3937_RS00675at 155.898 kb on - strand, within DDA3937_RS00675at 155.898 kb on - strand, within DDA3937_RS00675at 155.898 kb on - strand, within DDA3937_RS00675at 155.898 kb on - strand, within DDA3937_RS00675at 156.142 kb on + strand, within DDA3937_RS00675at 156.142 kb on + strand, within DDA3937_RS00675at 156.142 kb on + strand, within DDA3937_RS00675at 156.150 kb on - strand, within DDA3937_RS00675at 156.150 kb on - strand, within DDA3937_RS00675at 156.150 kb on - strand, within DDA3937_RS00675at 156.150 kb on - strand, within DDA3937_RS00675at 156.195 kb on + strandat 156.195 kb on + strandat 156.220 kb on + strandat 156.221 kb on - strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.243 kb on + strandat 156.244 kb on - strandat 156.244 kb on - strandat 156.244 kb on - strandat 156.244 kb on - strandat 156.275 kb on - strandat 156.312 kb on + strandat 156.592 kb on + strand, within DDA3937_RS00680at 156.593 kb on - strand, within DDA3937_RS00680at 156.593 kb on - strand, within DDA3937_RS00680at 156.593 kb on - strand, within DDA3937_RS00680at 156.613 kb on + strand, within DDA3937_RS00680at 156.613 kb on + strand, within DDA3937_RS00680at 156.613 kb on + strand, within DDA3937_RS00680at 156.613 kb on + strand, within DDA3937_RS00680at 156.614 kb on - strand, within DDA3937_RS00680at 156.853 kb on + strand, within DDA3937_RS00680at 156.854 kb on - strand, within DDA3937_RS00680at 156.905 kb on + strandat 156.983 kb on - strandat 157.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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154,556 + DDA3937_RS00670 0.28 -0.1
154,556 + DDA3937_RS00670 0.28 -0.8
154,557 - DDA3937_RS00670 0.28 +0.1
154,620 - DDA3937_RS00670 0.33 -2.1
154,631 + DDA3937_RS00670 0.34 -0.3
154,647 - DDA3937_RS00670 0.35 +0.9
154,647 - DDA3937_RS00670 0.35 -2.3
154,647 - DDA3937_RS00670 0.35 +0.1
154,647 - DDA3937_RS00670 0.35 +0.0
154,652 + DDA3937_RS00670 0.36 -1.7
154,652 + DDA3937_RS00670 0.36 -0.5
154,653 - DDA3937_RS00670 0.36 -1.2
154,653 - DDA3937_RS00670 0.36 +1.7
154,653 - DDA3937_RS00670 0.36 +0.2
154,653 - DDA3937_RS00670 0.36 +1.0
154,653 - DDA3937_RS00670 0.36 +0.2
154,653 - DDA3937_RS00670 0.36 -0.9
154,670 + DDA3937_RS00670 0.37 -0.7
154,670 + DDA3937_RS00670 0.37 -0.6
154,671 - DDA3937_RS00670 0.37 -0.7
154,671 - DDA3937_RS00670 0.37 -0.4
154,673 + DDA3937_RS00670 0.37 +0.3
154,673 + DDA3937_RS00670 0.37 +0.2
154,673 + DDA3937_RS00670 0.37 -0.8
154,673 + DDA3937_RS00670 0.37 +0.6
154,674 - DDA3937_RS00670 0.37 -0.1
154,674 - DDA3937_RS00670 0.37 +0.3
154,772 + DDA3937_RS00670 0.45 +0.0
154,773 - DDA3937_RS00670 0.45 +0.9
154,813 + DDA3937_RS00670 0.48 +0.7
154,813 + DDA3937_RS00670 0.48 -0.6
154,814 - DDA3937_RS00670 0.48 -0.6
154,814 - DDA3937_RS00670 0.48 -0.1
154,822 - DDA3937_RS00670 0.49 -1.3
154,931 - DDA3937_RS00670 0.58 +0.6
154,958 + DDA3937_RS00670 0.60 +0.4
154,958 + DDA3937_RS00670 0.60 -0.5
154,958 + DDA3937_RS00670 0.60 -0.0
154,959 - DDA3937_RS00670 0.60 +0.4
154,959 - DDA3937_RS00670 0.60 +1.0
154,959 - DDA3937_RS00670 0.60 +0.4
154,959 - DDA3937_RS00670 0.60 -2.3
154,979 - DDA3937_RS00670 0.61 +0.3
154,979 - DDA3937_RS00670 0.61 +0.2
154,979 - DDA3937_RS00670 0.61 -0.0
154,988 + DDA3937_RS00670 0.62 -1.1
154,988 + DDA3937_RS00670 0.62 -2.3
154,988 + DDA3937_RS00670 0.62 -0.6
154,988 + DDA3937_RS00670 0.62 +0.3
154,988 + DDA3937_RS00670 0.62 +0.5
154,988 + DDA3937_RS00670 0.62 -0.1
154,988 + DDA3937_RS00670 0.62 -0.0
154,988 + DDA3937_RS00670 0.62 +1.9
154,988 + DDA3937_RS00670 0.62 -0.8
154,989 - DDA3937_RS00670 0.62 -0.4
154,989 - DDA3937_RS00670 0.62 -1.2
154,989 - DDA3937_RS00670 0.62 -0.8
154,989 - DDA3937_RS00670 0.62 +0.7
154,989 - DDA3937_RS00670 0.62 -0.6
154,989 - DDA3937_RS00670 0.62 -0.0
154,989 - DDA3937_RS00670 0.62 -0.2
154,989 - DDA3937_RS00670 0.62 -0.2
154,989 - DDA3937_RS00670 0.62 +0.0
154,989 - DDA3937_RS00670 0.62 -0.4
154,989 - DDA3937_RS00670 0.62 -0.3
154,989 - DDA3937_RS00670 0.62 +0.6
154,990 + DDA3937_RS00670 0.62 -0.5
154,990 + DDA3937_RS00670 0.62 -0.3
154,990 + DDA3937_RS00670 0.62 -1.6
154,991 - DDA3937_RS00670 0.62 -0.0
154,991 - DDA3937_RS00670 0.62 +1.0
154,991 - DDA3937_RS00670 0.62 -0.0
154,991 - DDA3937_RS00670 0.62 -0.2
154,991 - DDA3937_RS00670 0.62 -0.4
154,991 - DDA3937_RS00670 0.62 +0.4
154,991 - DDA3937_RS00670 0.62 -1.6
154,991 - DDA3937_RS00670 0.62 -0.2
154,991 - DDA3937_RS00670 0.62 +0.3
155,259 + DDA3937_RS00670 0.83 +0.1
155,260 - DDA3937_RS00670 0.83 -1.6
155,348 + -0.4
155,349 - -0.3
155,349 - +1.2
155,483 + +0.1
155,484 - -0.4
155,897 + DDA3937_RS00675 0.56 -0.8
155,897 + DDA3937_RS00675 0.56 +0.2
155,897 + DDA3937_RS00675 0.56 -0.3
155,897 + DDA3937_RS00675 0.56 -1.6
155,898 - DDA3937_RS00675 0.56 +0.1
155,898 - DDA3937_RS00675 0.56 -0.1
155,898 - DDA3937_RS00675 0.56 +0.4
155,898 - DDA3937_RS00675 0.56 -0.3
156,142 + DDA3937_RS00675 0.88 -1.2
156,142 + DDA3937_RS00675 0.88 -0.7
156,142 + DDA3937_RS00675 0.88 -0.4
156,150 - DDA3937_RS00675 0.89 -1.8
156,150 - DDA3937_RS00675 0.89 -0.7
156,150 - DDA3937_RS00675 0.89 -1.0
156,150 - DDA3937_RS00675 0.89 +0.8
156,195 + -1.0
156,195 + -1.0
156,220 + +0.3
156,221 - -0.1
156,243 + +0.1
156,243 + +0.4
156,243 + +1.2
156,243 + -0.6
156,243 + -2.4
156,243 + -1.8
156,243 + +0.2
156,244 - -0.0
156,244 - +0.3
156,244 - -0.6
156,244 - -2.0
156,275 - -0.3
156,312 + +0.4
156,592 + DDA3937_RS00680 0.50 -0.2
156,593 - DDA3937_RS00680 0.50 -0.5
156,593 - DDA3937_RS00680 0.50 -0.7
156,593 - DDA3937_RS00680 0.50 -0.4
156,613 + DDA3937_RS00680 0.53 -1.3
156,613 + DDA3937_RS00680 0.53 -0.2
156,613 + DDA3937_RS00680 0.53 -0.6
156,613 + DDA3937_RS00680 0.53 -0.6
156,614 - DDA3937_RS00680 0.53 -0.7
156,853 + DDA3937_RS00680 0.87 -0.0
156,854 - DDA3937_RS00680 0.87 -0.1
156,905 + -0.6
156,983 - -0.2
157,046 - -0.0

Or see this region's nucleotide sequence