Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00315 and DDA3937_RS00320 are separated by 27 nucleotides DDA3937_RS00320 and DDA3937_RS00325 are separated by 198 nucleotides DDA3937_RS00325 and DDA3937_RS00330 are separated by 123 nucleotides
DDA3937_RS00315: DDA3937_RS00315 - ABC transporter ATP-binding protein, at 73,614 to 74,717
_RS00315
DDA3937_RS00320: DDA3937_RS00320 - endonuclease/exonuclease/phosphatase family protein, at 74,745 to 75,608
_RS00320
DDA3937_RS00325: DDA3937_RS00325 - DUF1471 domain-containing protein, at 75,807 to 76,073
_RS00325
DDA3937_RS00330: DDA3937_RS00330 - hypothetical protein, at 76,197 to 76,829
_RS00330
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.863 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.975 kb on + strand, within DDA3937_RS00315 at 74.120 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.231 kb on + strand, within DDA3937_RS00315 at 74.277 kb on + strand, within DDA3937_RS00315 at 74.295 kb on - strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.404 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.675 kb on - strand at 74.675 kb on - strand at 74.716 kb on - strand at 74.718 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.772 kb on + strand at 74.773 kb on - strand at 74.846 kb on + strand, within DDA3937_RS00320 at 74.846 kb on + strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.938 kb on - strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.096 kb on - strand, within DDA3937_RS00320 at 75.098 kb on - strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.367 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.657 kb on - strand at 75.700 kb on - strand at 75.734 kb on + strand at 75.898 kb on + strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.947 kb on + strand, within DDA3937_RS00325 at 76.055 kb on - strand at 76.065 kb on + strand at 76.065 kb on + strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.071 kb on + strand at 76.071 kb on + strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.084 kb on - strand at 76.085 kb on + strand at 76.086 kb on - strand at 76.118 kb on - strand at 76.118 kb on - strand at 76.124 kb on + strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.243 kb on + strand at 76.341 kb on - strand, within DDA3937_RS00330 at 76.361 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.509 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 73,770 + DDA3937_RS00315 0.14 +0.1 73,770 + DDA3937_RS00315 0.14 -0.7 73,770 + DDA3937_RS00315 0.14 -0.0 73,770 + -0.3 73,770 + DDA3937_RS00315 0.14 +2.0 73,770 + DDA3937_RS00315 0.14 -0.8 73,770 + DDA3937_RS00315 0.14 -1.3 73,771 - DDA3937_RS00315 0.14 -0.8 73,771 - DDA3937_RS00315 0.14 -1.1 73,771 - DDA3937_RS00315 0.14 -0.3 73,863 + DDA3937_RS00315 0.23 -0.6 73,890 + DDA3937_RS00315 0.25 -0.5 73,890 + DDA3937_RS00315 0.25 -0.8 73,975 + DDA3937_RS00315 0.33 -0.4 74,120 + DDA3937_RS00315 0.46 -0.4 74,225 + DDA3937_RS00315 0.55 -0.6 74,225 + +1.1 74,225 + DDA3937_RS00315 0.55 -0.1 74,225 + DDA3937_RS00315 0.55 -0.2 74,225 + DDA3937_RS00315 0.55 -0.3 74,225 + DDA3937_RS00315 0.55 -0.2 74,225 + DDA3937_RS00315 0.55 -0.5 74,225 + DDA3937_RS00315 0.55 -0.6 74,225 + DDA3937_RS00315 0.55 -0.7 74,226 - DDA3937_RS00315 0.55 +0.7 74,226 - DDA3937_RS00315 0.55 -0.8 74,226 - DDA3937_RS00315 0.55 -0.8 74,231 + DDA3937_RS00315 0.56 +0.0 74,277 + DDA3937_RS00315 0.60 -0.8 74,295 - DDA3937_RS00315 0.62 -0.1 74,380 + DDA3937_RS00315 0.69 -0.4 74,380 + +0.3 74,380 + DDA3937_RS00315 0.69 +0.4 74,380 + DDA3937_RS00315 0.69 +0.4 74,381 - DDA3937_RS00315 0.69 -0.2 74,381 - DDA3937_RS00315 0.69 -1.6 74,404 - DDA3937_RS00315 0.72 -0.4 74,581 - DDA3937_RS00315 0.88 -0.8 74,581 - DDA3937_RS00315 0.88 -2.3 74,581 - DDA3937_RS00315 0.88 -1.7 74,675 - -0.3 74,675 - -1.3 74,716 - +0.6 74,718 + +0.2 74,728 + -0.7 74,728 + +0.6 74,728 + -0.6 74,728 + +1.1 74,729 - -0.9 74,729 - -1.2 74,729 - -0.4 74,750 + +0.1 74,750 + +0.5 74,750 + -0.5 74,751 - -2.3 74,751 - -0.3 74,751 - +0.9 74,751 - +1.1 74,756 + -0.6 74,756 + -0.4 74,756 + -1.5 74,756 + -0.1 74,756 + -0.7 74,760 + -1.1 74,760 + -1.3 74,760 + -1.1 74,760 + -0.1 74,760 + -0.1 74,761 - -0.3 74,761 - -1.4 74,761 - +0.1 74,772 + -1.2 74,773 - -0.3 74,846 + DDA3937_RS00320 0.12 -0.5 74,846 + DDA3937_RS00320 0.12 -1.3 74,847 - DDA3937_RS00320 0.12 +0.3 74,847 - DDA3937_RS00320 0.12 -0.3 74,847 - DDA3937_RS00320 0.12 -0.7 74,847 - DDA3937_RS00320 0.12 +0.7 74,937 + DDA3937_RS00320 0.22 +0.4 74,937 + DDA3937_RS00320 0.22 -0.3 74,938 - DDA3937_RS00320 0.22 +0.2 75,095 + DDA3937_RS00320 0.41 -0.8 75,095 + DDA3937_RS00320 0.41 -0.4 75,095 + DDA3937_RS00320 0.41 -0.6 75,095 + DDA3937_RS00320 0.41 -1.8 75,096 - DDA3937_RS00320 0.41 +0.4 75,098 - DDA3937_RS00320 0.41 +0.7 75,153 + DDA3937_RS00320 0.47 -0.3 75,153 + DDA3937_RS00320 0.47 -1.8 75,153 + DDA3937_RS00320 0.47 -0.0 75,153 + DDA3937_RS00320 0.47 -0.2 75,153 + DDA3937_RS00320 0.47 -0.4 75,153 + DDA3937_RS00320 0.47 +1.5 75,153 + DDA3937_RS00320 0.47 +0.4 75,153 + DDA3937_RS00320 0.47 -0.2 75,153 + DDA3937_RS00320 0.47 -0.3 75,154 - DDA3937_RS00320 0.47 -1.4 75,154 - DDA3937_RS00320 0.47 +1.2 75,154 - DDA3937_RS00320 0.47 +0.7 75,154 - DDA3937_RS00320 0.47 -0.2 75,155 + DDA3937_RS00320 0.47 -1.6 75,155 + DDA3937_RS00320 0.47 +1.2 75,156 - DDA3937_RS00320 0.48 -0.1 75,156 - DDA3937_RS00320 0.48 +0.2 75,156 - DDA3937_RS00320 0.48 -0.3 75,158 + DDA3937_RS00320 0.48 -0.5 75,158 + DDA3937_RS00320 0.48 -0.4 75,159 - DDA3937_RS00320 0.48 -1.2 75,159 - DDA3937_RS00320 0.48 -3.0 75,159 - DDA3937_RS00320 0.48 -1.6 75,366 + DDA3937_RS00320 0.72 -0.4 75,366 + DDA3937_RS00320 0.72 -0.7 75,366 + DDA3937_RS00320 0.72 -0.4 75,367 - DDA3937_RS00320 0.72 -0.0 75,474 - DDA3937_RS00320 0.84 +0.4 75,474 - DDA3937_RS00320 0.84 -0.3 75,657 - +1.7 75,700 - +2.3 75,734 + +0.9 75,898 + DDA3937_RS00325 0.34 -0.3 75,899 - DDA3937_RS00325 0.34 -0.3 75,899 - DDA3937_RS00325 0.34 +0.4 75,899 - DDA3937_RS00325 0.34 -0.8 75,947 + DDA3937_RS00325 0.52 +0.2 76,055 - +0.3 76,065 + -0.5 76,065 + -0.6 76,066 - -0.5 76,066 - -0.2 76,066 - -1.1 76,066 - -0.8 76,066 - -0.6 76,071 + -0.2 76,071 + -0.9 76,072 - +0.6 76,072 - -0.5 76,072 - -1.2 76,072 - +0.3 76,072 - -0.8 76,079 + +0.2 76,079 + +1.0 76,079 + -1.2 76,079 + +0.3 76,080 - -0.0 76,080 - -0.3 76,080 - -0.1 76,083 + -1.3 76,083 + +0.1 76,083 + -0.0 76,083 + +0.5 76,083 + -0.1 76,084 - -0.8 76,085 + +0.2 76,086 - -1.0 76,118 - +0.2 76,118 - -0.1 76,124 + -0.0 76,125 - -0.9 76,125 - -0.6 76,125 - -0.1 76,243 + +0.3 76,341 - DDA3937_RS00330 0.23 +1.2 76,361 + DDA3937_RS00330 0.26 -0.7 76,374 + DDA3937_RS00330 0.28 -1.7 76,374 + DDA3937_RS00330 0.28 -1.0 76,374 + DDA3937_RS00330 0.28 +0.7 76,374 + DDA3937_RS00330 0.28 +1.2 76,375 - DDA3937_RS00330 0.28 -0.0 76,375 - DDA3937_RS00330 0.28 -0.5 76,375 - DDA3937_RS00330 0.28 -0.3 76,375 - DDA3937_RS00330 0.28 -0.8 76,418 + DDA3937_RS00330 0.35 +2.7 76,418 + DDA3937_RS00330 0.35 +0.6 76,418 + DDA3937_RS00330 0.35 -0.3 76,418 + DDA3937_RS00330 0.35 -0.2 76,419 - DDA3937_RS00330 0.35 -0.8 76,419 - DDA3937_RS00330 0.35 -0.4 76,422 + DDA3937_RS00330 0.36 +0.4 76,422 + DDA3937_RS00330 0.36 +0.6 76,431 - DDA3937_RS00330 0.37 -0.2 76,431 - DDA3937_RS00330 0.37 -0.0 76,478 + DDA3937_RS00330 0.44 +0.7 76,478 + DDA3937_RS00330 0.44 -0.5 76,478 + DDA3937_RS00330 0.44 +0.1 76,509 + DDA3937_RS00330 0.49 +0.6 76,565 + DDA3937_RS00330 0.58 +0.3 76,565 + DDA3937_RS00330 0.58 +0.2 76,565 + DDA3937_RS00330 0.58 -1.0 76,565 + DDA3937_RS00330 0.58 -1.8 76,566 - DDA3937_RS00330 0.58 -1.4 76,566 - DDA3937_RS00330 0.58 +0.3 76,568 + DDA3937_RS00330 0.59 -0.1 76,568 + DDA3937_RS00330 0.59 +1.7 76,568 + DDA3937_RS00330 0.59 -0.5 76,568 + DDA3937_RS00330 0.59 -1.3 76,568 + DDA3937_RS00330 0.59 -0.5 76,568 + DDA3937_RS00330 0.59 -1.0 76,569 - DDA3937_RS00330 0.59 -1.6 76,569 - DDA3937_RS00330 0.59 -0.8 76,569 - DDA3937_RS00330 0.59 +1.0
Or see this region's nucleotide sequence