Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17230

Experiment: 7.5mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS17215 and DDA3937_RS17220 are separated by 41 nucleotidesDDA3937_RS17220 and DDA3937_RS17225 are separated by 4 nucleotidesDDA3937_RS17225 and DDA3937_RS17230 are separated by 5 nucleotidesDDA3937_RS17230 and DDA3937_RS17235 are separated by 221 nucleotides DDA3937_RS17215: DDA3937_RS17215 - 50S ribosomal protein L9, at 3,922,599 to 3,923,048 _RS17215 DDA3937_RS17220: DDA3937_RS17220 - 30S ribosomal protein S18, at 3,923,090 to 3,923,317 _RS17220 DDA3937_RS17225: DDA3937_RS17225 - primosomal replication protein N, at 3,923,322 to 3,923,642 _RS17225 DDA3937_RS17230: DDA3937_RS17230 - 30S ribosomal protein S6, at 3,923,648 to 3,924,040 _RS17230 DDA3937_RS17235: DDA3937_RS17235 - esterase, at 3,924,262 to 3,925,011 _RS17235 Position (kb) 3923 3924 3925Strain fitness (log2 ratio) -2 -1 0 1at 3923.049 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.206 kb on - strandat 3924.229 kb on + strandat 3924.248 kb on + strandat 3924.249 kb on - strandat 3924.299 kb on - strandat 3924.344 kb on + strand, within DDA3937_RS17235at 3924.344 kb on + strand, within DDA3937_RS17235at 3924.345 kb on - strand, within DDA3937_RS17235at 3924.376 kb on + strand, within DDA3937_RS17235at 3924.377 kb on - strand, within DDA3937_RS17235at 3924.387 kb on - strand, within DDA3937_RS17235at 3924.517 kb on + strand, within DDA3937_RS17235at 3924.629 kb on + strand, within DDA3937_RS17235at 3924.630 kb on - strand, within DDA3937_RS17235at 3924.690 kb on + strand, within DDA3937_RS17235at 3924.691 kb on - strandat 3924.691 kb on - strand, within DDA3937_RS17235at 3924.691 kb on - strand, within DDA3937_RS17235at 3924.691 kb on - strand, within DDA3937_RS17235at 3924.731 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strandat 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.753 kb on + strand, within DDA3937_RS17235at 3924.754 kb on - strand, within DDA3937_RS17235at 3924.754 kb on - strand, within DDA3937_RS17235at 3924.754 kb on - strand, within DDA3937_RS17235at 3924.754 kb on - strand, within DDA3937_RS17235at 3924.754 kb on - strand, within DDA3937_RS17235at 3924.870 kb on - strand, within DDA3937_RS17235at 3924.870 kb on - strand, within DDA3937_RS17235at 3924.879 kb on - strand, within DDA3937_RS17235at 3924.879 kb on - strand, within DDA3937_RS17235at 3924.879 kb on - strand, within DDA3937_RS17235at 3924.884 kb on + strand, within DDA3937_RS17235at 3924.885 kb on - strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.903 kb on + strand, within DDA3937_RS17235at 3924.904 kb on - strand, within DDA3937_RS17235at 3924.904 kb on - strand, within DDA3937_RS17235at 3924.905 kb on + strand, within DDA3937_RS17235at 3924.905 kb on + strand, within DDA3937_RS17235at 3924.905 kb on + strand, within DDA3937_RS17235at 3924.906 kb on - strand, within DDA3937_RS17235at 3924.906 kb on - strand, within DDA3937_RS17235at 3924.976 kb on + strandat 3925.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7.5mM_PTB
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3,923,049 + -0.2
3,924,205 + +0.1
3,924,205 + -0.4
3,924,205 + -0.1
3,924,205 + -1.8
3,924,206 - +0.6
3,924,229 + +1.7
3,924,248 + +0.1
3,924,249 - -0.7
3,924,299 - -0.8
3,924,344 + DDA3937_RS17235 0.11 -1.5
3,924,344 + DDA3937_RS17235 0.11 -0.1
3,924,345 - DDA3937_RS17235 0.11 -1.2
3,924,376 + DDA3937_RS17235 0.15 -0.9
3,924,377 - DDA3937_RS17235 0.15 -0.8
3,924,387 - DDA3937_RS17235 0.17 -0.2
3,924,517 + DDA3937_RS17235 0.34 -0.6
3,924,629 + DDA3937_RS17235 0.49 +0.2
3,924,630 - DDA3937_RS17235 0.49 +0.0
3,924,690 + DDA3937_RS17235 0.57 -0.6
3,924,691 - -1.2
3,924,691 - DDA3937_RS17235 0.57 +0.1
3,924,691 - DDA3937_RS17235 0.57 +0.3
3,924,691 - DDA3937_RS17235 0.57 -0.4
3,924,731 + DDA3937_RS17235 0.63 -2.3
3,924,753 + -0.2
3,924,753 + DDA3937_RS17235 0.65 -0.6
3,924,753 + DDA3937_RS17235 0.65 -0.4
3,924,753 + DDA3937_RS17235 0.65 +1.4
3,924,753 + DDA3937_RS17235 0.65 -1.5
3,924,753 + DDA3937_RS17235 0.65 +0.0
3,924,753 + DDA3937_RS17235 0.65 -2.2
3,924,753 + DDA3937_RS17235 0.65 +0.2
3,924,754 - DDA3937_RS17235 0.66 +1.1
3,924,754 - DDA3937_RS17235 0.66 -0.0
3,924,754 - DDA3937_RS17235 0.66 -0.9
3,924,754 - DDA3937_RS17235 0.66 +0.4
3,924,754 - DDA3937_RS17235 0.66 -0.0
3,924,870 - DDA3937_RS17235 0.81 +0.0
3,924,870 - DDA3937_RS17235 0.81 +0.3
3,924,879 - DDA3937_RS17235 0.82 +0.6
3,924,879 - DDA3937_RS17235 0.82 -0.2
3,924,879 - DDA3937_RS17235 0.82 +0.0
3,924,884 + DDA3937_RS17235 0.83 +0.6
3,924,885 - DDA3937_RS17235 0.83 -1.5
3,924,903 + DDA3937_RS17235 0.85 -0.8
3,924,903 + DDA3937_RS17235 0.85 -1.9
3,924,903 + DDA3937_RS17235 0.85 -1.4
3,924,903 + DDA3937_RS17235 0.85 -0.2
3,924,903 + DDA3937_RS17235 0.85 -1.2
3,924,903 + DDA3937_RS17235 0.85 -0.1
3,924,903 + DDA3937_RS17235 0.85 -0.4
3,924,903 + DDA3937_RS17235 0.85 -0.5
3,924,904 - DDA3937_RS17235 0.86 -0.8
3,924,904 - DDA3937_RS17235 0.86 +0.1
3,924,905 + DDA3937_RS17235 0.86 -1.0
3,924,905 + DDA3937_RS17235 0.86 -0.4
3,924,905 + DDA3937_RS17235 0.86 -0.3
3,924,906 - DDA3937_RS17235 0.86 +0.7
3,924,906 - DDA3937_RS17235 0.86 +0.0
3,924,976 + +1.4
3,925,007 - -0.2

Or see this region's nucleotide sequence