Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01735

Experiment: 7.5mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotidesDDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421 _RS01730 DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194 _RS01735 DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799 _RS01740 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.527 kb on - strand, within DDA3937_RS01730at 383.563 kb on - strand, within DDA3937_RS01730at 383.790 kb on - strand, within DDA3937_RS01730at 383.790 kb on - strand, within DDA3937_RS01730at 383.790 kb on - strand, within DDA3937_RS01730at 383.802 kb on + strand, within DDA3937_RS01730at 383.802 kb on + strand, within DDA3937_RS01730at 383.803 kb on - strand, within DDA3937_RS01730at 383.846 kb on + strand, within DDA3937_RS01730at 383.847 kb on - strand, within DDA3937_RS01730at 383.850 kb on + strand, within DDA3937_RS01730at 383.850 kb on + strand, within DDA3937_RS01730at 383.850 kb on + strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.851 kb on - strand, within DDA3937_RS01730at 383.902 kb on + strand, within DDA3937_RS01730at 383.903 kb on - strand, within DDA3937_RS01730at 383.903 kb on - strand, within DDA3937_RS01730at 383.970 kb on + strand, within DDA3937_RS01730at 384.049 kb on - strand, within DDA3937_RS01730at 384.064 kb on + strand, within DDA3937_RS01730at 384.109 kb on - strand, within DDA3937_RS01730at 384.129 kb on + strand, within DDA3937_RS01730at 384.130 kb on - strandat 384.301 kb on + strand, within DDA3937_RS01730at 384.301 kb on + strand, within DDA3937_RS01730at 384.302 kb on - strand, within DDA3937_RS01730at 384.309 kb on + strandat 384.310 kb on - strandat 384.310 kb on - strandat 384.310 kb on - strandat 384.310 kb on - strandat 384.312 kb on + strandat 384.312 kb on + strandat 384.312 kb on + strandat 384.313 kb on - strandat 384.313 kb on - strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.342 kb on + strandat 384.343 kb on - strandat 384.343 kb on - strandat 384.343 kb on - strandat 384.367 kb on - strandat 384.367 kb on - strandat 384.367 kb on - strandat 384.435 kb on - strandat 384.507 kb on + strandat 384.507 kb on + strandat 384.507 kb on + strandat 384.508 kb on - strandat 384.508 kb on - strandat 384.508 kb on - strandat 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.731 kb on + strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.732 kb on - strand, within DDA3937_RS01735at 384.906 kb on + strand, within DDA3937_RS01735at 384.906 kb on + strand, within DDA3937_RS01735at 384.907 kb on - strand, within DDA3937_RS01735at 384.953 kb on + strand, within DDA3937_RS01735at 384.994 kb on - strand, within DDA3937_RS01735at 384.994 kb on - strand, within DDA3937_RS01735at 384.995 kb on + strand, within DDA3937_RS01735at 384.995 kb on + strand, within DDA3937_RS01735at 384.995 kb on + strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 384.996 kb on - strand, within DDA3937_RS01735at 385.058 kb on + strand, within DDA3937_RS01735at 385.101 kb on + strand, within DDA3937_RS01735at 385.101 kb on + strand, within DDA3937_RS01735at 385.138 kb on - strandat 385.254 kb on - strandat 385.259 kb on + strandat 385.260 kb on - strandat 385.262 kb on + strandat 385.262 kb on + strandat 385.263 kb on - strandat 385.263 kb on - strandat 385.263 kb on - strandat 385.279 kb on + strandat 385.301 kb on + strandat 385.302 kb on - strandat 385.302 kb on - strandat 385.302 kb on - strandat 385.323 kb on + strandat 385.324 kb on - strandat 385.324 kb on - strandat 385.324 kb on - strandat 385.395 kb on + strandat 385.491 kb on + strandat 385.605 kb on - strand, within DDA3937_RS01740at 385.612 kb on - strand, within DDA3937_RS01740at 385.612 kb on - strand, within DDA3937_RS01740at 385.750 kb on - strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.910 kb on + strand, within DDA3937_RS01740at 385.911 kb on - strand, within DDA3937_RS01740at 386.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7.5mM_PTB
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383,527 - DDA3937_RS01730 0.23 -0.8
383,563 - DDA3937_RS01730 0.26 -0.4
383,790 - DDA3937_RS01730 0.46 -1.2
383,790 - DDA3937_RS01730 0.46 -0.4
383,790 - DDA3937_RS01730 0.46 -0.0
383,802 + DDA3937_RS01730 0.47 -0.8
383,802 + DDA3937_RS01730 0.47 +0.5
383,803 - DDA3937_RS01730 0.47 -0.2
383,846 + DDA3937_RS01730 0.50 -0.6
383,847 - DDA3937_RS01730 0.50 -1.0
383,850 + DDA3937_RS01730 0.51 +0.3
383,850 + DDA3937_RS01730 0.51 -0.3
383,850 + DDA3937_RS01730 0.51 +1.0
383,851 - DDA3937_RS01730 0.51 +0.4
383,851 - DDA3937_RS01730 0.51 -0.1
383,851 - DDA3937_RS01730 0.51 -0.0
383,851 - DDA3937_RS01730 0.51 +1.0
383,851 - DDA3937_RS01730 0.51 -1.0
383,851 - DDA3937_RS01730 0.51 -1.0
383,851 - DDA3937_RS01730 0.51 +0.5
383,902 + DDA3937_RS01730 0.55 -0.7
383,903 - DDA3937_RS01730 0.55 -0.6
383,903 - DDA3937_RS01730 0.55 +0.5
383,970 + DDA3937_RS01730 0.61 -0.2
384,049 - DDA3937_RS01730 0.68 +0.1
384,064 + DDA3937_RS01730 0.69 -0.5
384,109 - DDA3937_RS01730 0.73 -0.4
384,129 + DDA3937_RS01730 0.75 -0.6
384,130 - +1.0
384,301 + DDA3937_RS01730 0.90 -0.3
384,301 + DDA3937_RS01730 0.90 -0.3
384,302 - DDA3937_RS01730 0.90 -0.3
384,309 + -0.4
384,310 - -0.9
384,310 - +0.4
384,310 - -2.4
384,310 - +0.1
384,312 + -0.4
384,312 + +0.6
384,312 + -1.0
384,313 - +0.1
384,313 - -1.4
384,342 + -0.0
384,342 + +0.2
384,342 + +1.3
384,342 + -0.5
384,342 + +0.4
384,342 + -0.9
384,342 + +0.1
384,342 + -0.0
384,343 - -0.7
384,343 - -0.0
384,343 - +0.5
384,367 - -0.3
384,367 - +2.0
384,367 - -0.8
384,435 - +0.1
384,507 + -0.7
384,507 + -0.8
384,507 + -1.0
384,508 - +0.2
384,508 - -0.8
384,508 - -0.2
384,731 + DDA3937_RS01735 0.39 +0.2
384,731 + DDA3937_RS01735 0.39 +0.4
384,731 + DDA3937_RS01735 0.39 +0.4
384,731 + DDA3937_RS01735 0.39 -1.0
384,731 + DDA3937_RS01735 0.39 +0.5
384,731 + DDA3937_RS01735 0.39 -0.1
384,731 + DDA3937_RS01735 0.39 -1.0
384,731 + DDA3937_RS01735 0.39 -0.2
384,731 + DDA3937_RS01735 0.39 -1.0
384,731 + DDA3937_RS01735 0.39 -3.1
384,731 + DDA3937_RS01735 0.39 -0.0
384,731 + DDA3937_RS01735 0.39 +3.3
384,731 + DDA3937_RS01735 0.39 -0.6
384,732 - DDA3937_RS01735 0.39 -0.4
384,732 - DDA3937_RS01735 0.39 -0.4
384,732 - DDA3937_RS01735 0.39 +0.3
384,732 - DDA3937_RS01735 0.39 -0.5
384,732 - DDA3937_RS01735 0.39 -0.6
384,732 - DDA3937_RS01735 0.39 -0.6
384,732 - DDA3937_RS01735 0.39 -0.2
384,732 - DDA3937_RS01735 0.39 -0.3
384,732 - DDA3937_RS01735 0.39 -1.7
384,906 + DDA3937_RS01735 0.62 -2.1
384,906 + DDA3937_RS01735 0.62 +0.1
384,907 - DDA3937_RS01735 0.62 +0.2
384,953 + DDA3937_RS01735 0.68 +0.3
384,994 - DDA3937_RS01735 0.74 +1.0
384,994 - DDA3937_RS01735 0.74 -1.8
384,995 + DDA3937_RS01735 0.74 -0.4
384,995 + DDA3937_RS01735 0.74 -0.4
384,995 + DDA3937_RS01735 0.74 -0.7
384,996 - DDA3937_RS01735 0.74 +0.1
384,996 - DDA3937_RS01735 0.74 -0.2
384,996 - DDA3937_RS01735 0.74 -1.4
384,996 - DDA3937_RS01735 0.74 -0.2
384,996 - DDA3937_RS01735 0.74 -0.0
384,996 - DDA3937_RS01735 0.74 -0.0
385,058 + DDA3937_RS01735 0.82 +0.2
385,101 + DDA3937_RS01735 0.88 -1.2
385,101 + DDA3937_RS01735 0.88 -0.4
385,138 - -0.6
385,254 - -0.4
385,259 + -0.8
385,260 - +0.6
385,262 + +1.0
385,262 + +0.3
385,263 - -0.4
385,263 - +1.0
385,263 - +1.0
385,279 + -0.6
385,301 + -0.0
385,302 - -1.3
385,302 - -0.8
385,302 - +1.0
385,323 + -0.2
385,324 - +0.7
385,324 - +0.4
385,324 - +1.3
385,395 + -0.7
385,491 + -0.6
385,605 - DDA3937_RS01740 0.15 -1.0
385,612 - DDA3937_RS01740 0.16 -1.4
385,612 - DDA3937_RS01740 0.16 -0.5
385,750 - DDA3937_RS01740 0.26 +0.4
385,910 + DDA3937_RS01740 0.37 -1.2
385,910 + DDA3937_RS01740 0.37 -1.8
385,910 + DDA3937_RS01740 0.37 -0.8
385,910 + DDA3937_RS01740 0.37 +1.0
385,910 + DDA3937_RS01740 0.37 -2.0
385,910 + DDA3937_RS01740 0.37 +0.4
385,910 + DDA3937_RS01740 0.37 -0.4
385,911 - DDA3937_RS01740 0.37 +0.2
386,142 + -2.0

Or see this region's nucleotide sequence