Experiment: 7.5mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00435 and DDA3937_RS00440 are separated by 674 nucleotides DDA3937_RS00440 and DDA3937_RS00445 are separated by 159 nucleotides
DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756
_RS00435
DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843
_RS00440
DDA3937_RS00445: DDA3937_RS00445 - two-component system sensor histidine kinase DcuS, at 104,003 to 105,616
_RS00445
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand at 101.444 kb on + strand, within DDA3937_RS00435 at 101.444 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.595 kb on - strand, within DDA3937_RS00435 at 101.696 kb on + strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.765 kb on - strand at 101.865 kb on - strand at 101.886 kb on - strand at 101.896 kb on + strand at 102.132 kb on + strand at 102.147 kb on + strand at 102.245 kb on + strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.431 kb on - strand at 102.431 kb on - strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.467 kb on - strand at 102.467 kb on - strand at 102.488 kb on - strand at 102.549 kb on + strand at 102.549 kb on + strand at 102.553 kb on + strand at 102.553 kb on + strand at 102.554 kb on - strand at 102.554 kb on - strand at 102.617 kb on - strand, within DDA3937_RS00440 at 102.617 kb on - strand, within DDA3937_RS00440 at 102.803 kb on + strand, within DDA3937_RS00440 at 102.804 kb on - strand, within DDA3937_RS00440 at 102.804 kb on - strand, within DDA3937_RS00440 at 102.908 kb on + strand, within DDA3937_RS00440 at 102.908 kb on + strand, within DDA3937_RS00440 at 102.908 kb on + strand, within DDA3937_RS00440 at 102.909 kb on - strand, within DDA3937_RS00440 at 102.988 kb on + strand, within DDA3937_RS00440 at 102.988 kb on + strand, within DDA3937_RS00440 at 102.989 kb on - strand, within DDA3937_RS00440 at 103.003 kb on + strand, within DDA3937_RS00440 at 103.013 kb on - strand, within DDA3937_RS00440 at 103.140 kb on - strand, within DDA3937_RS00440 at 103.148 kb on + strand, within DDA3937_RS00440 at 103.148 kb on + strand, within DDA3937_RS00440 at 103.372 kb on - strand, within DDA3937_RS00440 at 103.538 kb on + strand, within DDA3937_RS00440 at 103.538 kb on + strand, within DDA3937_RS00440 at 103.538 kb on + strand, within DDA3937_RS00440 at 103.538 kb on + strand, within DDA3937_RS00440 at 103.539 kb on - strand, within DDA3937_RS00440 at 103.539 kb on - strand, within DDA3937_RS00440 at 103.539 kb on - strand, within DDA3937_RS00440 at 103.539 kb on - strand, within DDA3937_RS00440 at 103.539 kb on - strand, within DDA3937_RS00440 at 103.541 kb on + strand, within DDA3937_RS00440 at 103.541 kb on + strand, within DDA3937_RS00440 at 103.541 kb on + strand, within DDA3937_RS00440 at 103.541 kb on + strand, within DDA3937_RS00440 at 103.541 kb on + strand, within DDA3937_RS00440 at 103.544 kb on + strand, within DDA3937_RS00440 at 103.544 kb on + strand, within DDA3937_RS00440 at 103.544 kb on + strand, within DDA3937_RS00440 at 103.545 kb on - strand, within DDA3937_RS00440 at 103.545 kb on - strand, within DDA3937_RS00440 at 103.545 kb on - strand, within DDA3937_RS00440 at 103.553 kb on + strand, within DDA3937_RS00440 at 103.592 kb on + strand, within DDA3937_RS00440 at 103.592 kb on + strand, within DDA3937_RS00440 at 103.592 kb on + strand, within DDA3937_RS00440 at 103.593 kb on - strand, within DDA3937_RS00440 at 103.694 kb on + strand at 103.695 kb on - strand, within DDA3937_RS00440 at 103.695 kb on - strand, within DDA3937_RS00440 at 103.733 kb on + strand at 103.841 kb on + strand at 103.841 kb on + strand at 103.841 kb on + strand at 103.841 kb on + strand at 103.842 kb on - strand at 103.844 kb on + strand at 103.845 kb on - strand at 103.879 kb on - strand at 103.968 kb on + strand at 103.969 kb on - strand at 104.009 kb on - strand at 104.226 kb on + strand, within DDA3937_RS00445 at 104.226 kb on + strand, within DDA3937_RS00445 at 104.226 kb on + strand, within DDA3937_RS00445 at 104.227 kb on - strand, within DDA3937_RS00445 at 104.449 kb on + strand, within DDA3937_RS00445 at 104.449 kb on + strand, within DDA3937_RS00445
Per-strain Table
Position Strand Gene LocusTag Fraction 7.5mM_PTB remove 101,441 + DDA3937_RS00435 0.30 -1.1 101,441 + DDA3937_RS00435 0.30 -0.1 101,442 - DDA3937_RS00435 0.30 +0.0 101,442 - DDA3937_RS00435 0.30 -0.1 101,442 - -1.0 101,444 + DDA3937_RS00435 0.30 +0.6 101,444 + DDA3937_RS00435 0.30 -0.1 101,550 + DDA3937_RS00435 0.54 -0.2 101,550 + DDA3937_RS00435 0.54 -0.1 101,550 + DDA3937_RS00435 0.54 -0.3 101,551 - DDA3937_RS00435 0.54 -0.3 101,551 - DDA3937_RS00435 0.54 +0.0 101,595 - DDA3937_RS00435 0.64 -1.1 101,696 + DDA3937_RS00435 0.86 -0.0 101,697 - DDA3937_RS00435 0.87 -0.6 101,697 - DDA3937_RS00435 0.87 -0.4 101,765 - -0.2 101,865 - +0.4 101,886 - +0.0 101,896 + +1.0 102,132 + -0.5 102,147 + -0.5 102,245 + +0.6 102,337 - -1.5 102,337 - +0.2 102,337 - -0.5 102,430 + -1.2 102,430 + +0.5 102,430 + -0.0 102,430 + +0.9 102,431 - -0.1 102,431 - +0.5 102,466 + -0.2 102,466 + +0.3 102,467 - -1.2 102,467 - -0.3 102,488 - +0.0 102,549 + -0.4 102,549 + -0.4 102,553 + -0.4 102,553 + -0.7 102,554 - -0.4 102,554 - +0.3 102,617 - DDA3937_RS00440 0.13 +0.2 102,617 - DDA3937_RS00440 0.13 +0.7 102,803 + DDA3937_RS00440 0.26 +0.2 102,804 - DDA3937_RS00440 0.26 +1.5 102,804 - DDA3937_RS00440 0.26 +0.3 102,908 + DDA3937_RS00440 0.34 -0.9 102,908 + DDA3937_RS00440 0.34 -1.1 102,908 + DDA3937_RS00440 0.34 -0.5 102,909 - DDA3937_RS00440 0.34 +0.2 102,988 + DDA3937_RS00440 0.39 -0.8 102,988 + DDA3937_RS00440 0.39 -1.1 102,989 - DDA3937_RS00440 0.39 +0.6 103,003 + DDA3937_RS00440 0.40 -0.0 103,013 - DDA3937_RS00440 0.41 -0.3 103,140 - DDA3937_RS00440 0.50 +0.3 103,148 + DDA3937_RS00440 0.51 -1.5 103,148 + DDA3937_RS00440 0.51 -0.7 103,372 - DDA3937_RS00440 0.67 +0.3 103,538 + DDA3937_RS00440 0.78 -0.3 103,538 + DDA3937_RS00440 0.78 -0.6 103,538 + DDA3937_RS00440 0.78 -1.9 103,538 + DDA3937_RS00440 0.78 +0.3 103,539 - DDA3937_RS00440 0.78 -2.3 103,539 - DDA3937_RS00440 0.78 -0.4 103,539 - DDA3937_RS00440 0.78 +1.0 103,539 - DDA3937_RS00440 0.78 -0.5 103,539 - DDA3937_RS00440 0.78 -0.1 103,541 + DDA3937_RS00440 0.79 +0.7 103,541 + DDA3937_RS00440 0.79 -0.7 103,541 + DDA3937_RS00440 0.79 +0.2 103,541 + DDA3937_RS00440 0.79 -0.1 103,541 + DDA3937_RS00440 0.79 +1.0 103,544 + DDA3937_RS00440 0.79 +0.3 103,544 + DDA3937_RS00440 0.79 -0.5 103,544 + DDA3937_RS00440 0.79 +0.2 103,545 - DDA3937_RS00440 0.79 -0.0 103,545 - DDA3937_RS00440 0.79 +0.5 103,545 - DDA3937_RS00440 0.79 +0.4 103,553 + DDA3937_RS00440 0.79 +0.0 103,592 + DDA3937_RS00440 0.82 +1.0 103,592 + DDA3937_RS00440 0.82 -0.5 103,592 + DDA3937_RS00440 0.82 +0.2 103,593 - DDA3937_RS00440 0.82 -0.1 103,694 + -0.7 103,695 - DDA3937_RS00440 0.89 -0.2 103,695 - DDA3937_RS00440 0.89 +0.2 103,733 + +0.4 103,841 + -0.4 103,841 + -1.0 103,841 + -0.6 103,841 + -0.5 103,842 - +0.5 103,844 + +0.4 103,845 - -0.6 103,879 - +0.2 103,968 + +0.0 103,969 - +2.6 104,009 - -0.2 104,226 + DDA3937_RS00445 0.14 -0.8 104,226 + DDA3937_RS00445 0.14 +0.0 104,226 + DDA3937_RS00445 0.14 -0.1 104,227 - DDA3937_RS00445 0.14 -1.5 104,449 + DDA3937_RS00445 0.28 -0.8 104,449 + DDA3937_RS00445 0.28 +0.5
Or see this region's nucleotide sequence