Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10460

Experiment: 3.75mM_PTB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3.75mM_PTB
2,353,813	+		DDA3937_RS10455	0.29	-0.9
2,353,842	-		DDA3937_RS10455	0.33	-0.2
2,353,842	-		DDA3937_RS10455	0.33	-1.1
2,353,842	-		DDA3937_RS10455	0.33	+0.3
2,353,842	-		DDA3937_RS10455	0.33	+0.4
2,353,865	+		DDA3937_RS10455	0.36	-0.9
2,353,866	-		DDA3937_RS10455	0.36	-0.3
2,353,866	-		DDA3937_RS10455	0.36	+0.2
2,353,866	-		DDA3937_RS10455	0.36	-0.8
2,353,867	+		DDA3937_RS10455	0.36	+1.1
2,353,880	+		DDA3937_RS10455	0.38	-0.3
2,353,883	+		DDA3937_RS10455	0.38	+1.5
2,353,883	+		DDA3937_RS10455	0.38	+0.3
2,353,883	+		DDA3937_RS10455	0.38	+0.3
2,353,883	+		DDA3937_RS10455	0.38	+0.0
2,353,884	-		DDA3937_RS10455	0.39	-1.4
2,353,904	+		DDA3937_RS10455	0.41	-0.7
2,353,905	-		DDA3937_RS10455	0.41	-0.1
2,353,920	-		DDA3937_RS10455	0.43	-0.3
2,353,922	-		DDA3937_RS10455	0.44	-0.7
2,353,922	-		DDA3937_RS10455	0.44	-0.3
2,353,922	-		DDA3937_RS10455	0.44	-0.7
2,353,931	-		DDA3937_RS10455	0.45	+1.1
2,353,954	+		DDA3937_RS10455	0.48	-1.2
2,353,954	+		DDA3937_RS10455	0.48	-0.4
2,353,954	+		DDA3937_RS10455	0.48	-0.1
2,353,955	-		DDA3937_RS10455	0.48	+0.3
2,353,958	-		DDA3937_RS10455	0.49	-0.7
2,353,958	-		DDA3937_RS10455	0.49	+0.6
2,353,970	+		DDA3937_RS10455	0.50	-0.4
2,353,992	-		DDA3937_RS10455	0.53	+0.3
2,353,992	-		DDA3937_RS10455	0.53	+0.3
2,353,992	-		DDA3937_RS10455	0.53	-0.0
2,353,993	+		DDA3937_RS10455	0.53	-0.1
2,353,993	+		DDA3937_RS10455	0.53	+0.0
2,353,993	+		DDA3937_RS10455	0.53	-0.4
2,354,002	+		DDA3937_RS10455	0.55	-0.0
2,354,012	+		DDA3937_RS10455	0.56	-1.0
2,354,013	-		DDA3937_RS10455	0.56	+0.3
2,354,077	+		DDA3937_RS10455	0.65	+0.3
2,354,077	+		DDA3937_RS10455	0.65	-0.1
2,354,077	+		DDA3937_RS10455	0.65	+0.1
2,354,077	+		DDA3937_RS10455	0.65	-0.1
2,354,078	-		DDA3937_RS10455	0.65	+0.1
2,354,119	+		DDA3937_RS10455	0.71	-0.9
2,354,119	+				+2.9
2,354,120	-		DDA3937_RS10455	0.71	-0.4
2,354,135	+		DDA3937_RS10455	0.73	-2.0
2,354,135	+		DDA3937_RS10455	0.73	+0.0
2,354,135	+				+0.3
2,354,136	-		DDA3937_RS10455	0.73	-0.9
2,354,289	-				-0.6
2,354,289	-				+0.4
2,354,289	-				+0.7
2,354,292	+				+0.8
2,354,292	+				-1.3
2,354,293	-				-0.5
2,354,355	+				+0.3
2,354,586	-				+0.5
2,354,611	+				+1.0
2,354,634	+				+0.3
2,354,662	+				+1.6
2,354,734	+				+0.1
2,354,742	+				+0.6
2,354,743	-				-1.7
2,354,789	-				+1.1
2,354,809	+				+1.2
2,354,810	-				+1.3
2,354,834	+				+0.3
2,354,887	+				-1.0
2,354,888	-				+0.1
2,355,011	-		DDA3937_RS10460	0.25	+0.6
2,355,011	-		DDA3937_RS10460	0.25	-0.1
2,355,011	-		DDA3937_RS10460	0.25	+0.7
2,355,094	+		DDA3937_RS10460	0.35	-0.1
2,355,094	+		DDA3937_RS10460	0.35	+0.2
2,355,094	+		DDA3937_RS10460	0.35	-0.1
2,355,095	-		DDA3937_RS10460	0.35	-0.7
2,355,095	-		DDA3937_RS10460	0.35	+0.1
2,355,095	-		DDA3937_RS10460	0.35	+1.9
2,355,095	-		DDA3937_RS10460	0.35	-0.6
2,355,098	+		DDA3937_RS10460	0.36	+0.3
2,355,098	+		DDA3937_RS10460	0.36	-0.3
2,355,098	+		DDA3937_RS10460	0.36	+0.3
2,355,098	+		DDA3937_RS10460	0.36	-0.5
2,355,099	-		DDA3937_RS10460	0.36	+0.3
2,355,099	-		DDA3937_RS10460	0.36	-0.9
2,355,099	-		DDA3937_RS10460	0.36	+1.1
2,355,099	-		DDA3937_RS10460	0.36	-0.5
2,355,099	-		DDA3937_RS10460	0.36	+1.0
2,355,099	-		DDA3937_RS10460	0.36	-0.3
2,355,161	+		DDA3937_RS10460	0.44	-0.7
2,355,162	-		DDA3937_RS10460	0.44	+0.3
2,355,162	-		DDA3937_RS10460	0.44	+0.6
2,355,225	+		DDA3937_RS10460	0.51	-1.0
2,355,274	+		DDA3937_RS10460	0.58	-0.5
2,355,285	+		DDA3937_RS10460	0.59	+0.3
2,355,286	-		DDA3937_RS10460	0.59	-0.3
2,355,286	-		DDA3937_RS10460	0.59	-0.3
2,355,286	-		DDA3937_RS10460	0.59	-0.7
2,355,286	-				-1.4
2,355,313	+		DDA3937_RS10460	0.62	-0.1
2,355,314	-		DDA3937_RS10460	0.62	+0.1
2,355,314	-		DDA3937_RS10460	0.62	+1.2
2,355,318	+		DDA3937_RS10460	0.63	+1.8
2,355,343	+		DDA3937_RS10460	0.66	-0.5
2,355,343	+				+0.3
2,355,510	-		DDA3937_RS10460	0.87	-0.4
2,355,655	+				+0.2
2,355,840	+		DDA3937_RS10465	0.19	-0.7
2,355,840	+		DDA3937_RS10465	0.19	-0.0
2,355,841	-		DDA3937_RS10465	0.19	+1.1
2,355,841	-		DDA3937_RS10465	0.19	+0.2
2,355,841	-		DDA3937_RS10465	0.19	-0.5
2,355,841	-		DDA3937_RS10465	0.19	+0.4
2,355,918	+		DDA3937_RS10465	0.25	+1.6
2,355,918	+		DDA3937_RS10465	0.25	-0.0
2,355,918	+		DDA3937_RS10465	0.25	-0.2
2,355,919	-		DDA3937_RS10465	0.25	-0.6
2,355,975	+		DDA3937_RS10465	0.30	+0.3
2,355,975	+				+1.1
2,355,975	+		DDA3937_RS10465	0.30	-0.4
2,355,976	-		DDA3937_RS10465	0.30	+0.5
2,355,976	-		DDA3937_RS10465	0.30	-0.3
2,356,131	-		DDA3937_RS10465	0.43	+1.5
2,356,174	+		DDA3937_RS10465	0.47	+0.4
2,356,174	+		DDA3937_RS10465	0.47	+0.2
2,356,175	-		DDA3937_RS10465	0.47	-0.8
2,356,269	+		DDA3937_RS10465	0.55	-0.9
2,356,270	-		DDA3937_RS10465	0.55	-0.4
2,356,413	+		DDA3937_RS10465	0.67	-0.3
2,356,413	+		DDA3937_RS10465	0.67	+0.3
2,356,413	+		DDA3937_RS10465	0.67	+0.6
2,356,414	-		DDA3937_RS10465	0.67	+0.1
2,356,414	-		DDA3937_RS10465	0.67	-0.3
2,356,414	-		DDA3937_RS10465	0.67	+0.8
2,356,414	-		DDA3937_RS10465	0.67	+1.0
2,356,414	-		DDA3937_RS10465	0.67	+0.3
2,356,414	-		DDA3937_RS10465	0.67	+0.8
2,356,504	+		DDA3937_RS10465	0.74	-0.3
2,356,505	-		DDA3937_RS10465	0.75	+0.7
2,356,505	-		DDA3937_RS10465	0.75	-0.0
2,356,590	+		DDA3937_RS10465	0.82	-0.6
2,356,591	-				+0.6