Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07760

Experiment: 3.75mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07755 and DDA3937_RS07760 overlap by 8 nucleotidesDDA3937_RS07760 and DDA3937_RS07765 are separated by 11 nucleotidesDDA3937_RS07765 and DDA3937_RS07770 are separated by 95 nucleotides DDA3937_RS07755: DDA3937_RS07755 - iron ABC transporter permease, at 1,752,872 to 1,753,894 _RS07755 DDA3937_RS07760: DDA3937_RS07760 - iron ABC transporter permease, at 1,753,887 to 1,754,936 _RS07760 DDA3937_RS07765: DDA3937_RS07765 - ABC transporter ATP-binding protein, at 1,754,948 to 1,755,757 _RS07765 DDA3937_RS07770: DDA3937_RS07770 - RraA family protein, at 1,755,853 to 1,756,488 _RS07770 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -1 0 1at 1753.048 kb on + strand, within DDA3937_RS07755at 1753.339 kb on + strand, within DDA3937_RS07755at 1753.886 kb on + strandat 1754.057 kb on - strand, within DDA3937_RS07760at 1754.114 kb on - strand, within DDA3937_RS07760at 1754.259 kb on + strandat 1754.259 kb on + strand, within DDA3937_RS07760at 1754.260 kb on - strand, within DDA3937_RS07760at 1754.260 kb on - strand, within DDA3937_RS07760at 1754.295 kb on + strand, within DDA3937_RS07760at 1754.295 kb on + strand, within DDA3937_RS07760at 1754.346 kb on + strand, within DDA3937_RS07760at 1754.479 kb on - strand, within DDA3937_RS07760at 1754.910 kb on + strandat 1754.920 kb on + strandat 1754.998 kb on + strandat 1754.998 kb on + strandat 1754.999 kb on - strandat 1755.076 kb on + strand, within DDA3937_RS07765at 1755.273 kb on + strand, within DDA3937_RS07765at 1755.429 kb on + strand, within DDA3937_RS07765at 1755.430 kb on - strand, within DDA3937_RS07765at 1755.530 kb on - strand, within DDA3937_RS07765at 1755.530 kb on - strand, within DDA3937_RS07765at 1755.647 kb on - strand, within DDA3937_RS07765at 1755.755 kb on + strandat 1755.755 kb on + strandat 1755.755 kb on + strandat 1755.755 kb on + strandat 1755.756 kb on - strandat 1755.756 kb on - strandat 1755.756 kb on - strandat 1755.756 kb on - strandat 1755.784 kb on - strandat 1755.784 kb on - strandat 1755.830 kb on + strandat 1755.859 kb on + strandat 1755.860 kb on - strandat 1755.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3.75mM_PTB
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1,753,048 + DDA3937_RS07755 0.17 -0.7
1,753,339 + DDA3937_RS07755 0.46 +0.0
1,753,886 + +0.2
1,754,057 - DDA3937_RS07760 0.16 +0.6
1,754,114 - DDA3937_RS07760 0.22 -0.6
1,754,259 + -1.6
1,754,259 + DDA3937_RS07760 0.35 -0.6
1,754,260 - DDA3937_RS07760 0.36 -0.9
1,754,260 - DDA3937_RS07760 0.36 +0.6
1,754,295 + DDA3937_RS07760 0.39 -1.2
1,754,295 + DDA3937_RS07760 0.39 -1.0
1,754,346 + DDA3937_RS07760 0.44 +0.3
1,754,479 - DDA3937_RS07760 0.56 +0.3
1,754,910 + +0.2
1,754,920 + +0.4
1,754,998 + -1.0
1,754,998 + -0.4
1,754,999 - +0.6
1,755,076 + DDA3937_RS07765 0.16 +0.0
1,755,273 + DDA3937_RS07765 0.40 -0.3
1,755,429 + DDA3937_RS07765 0.59 -0.2
1,755,430 - DDA3937_RS07765 0.60 -0.5
1,755,530 - DDA3937_RS07765 0.72 +0.4
1,755,530 - DDA3937_RS07765 0.72 -1.0
1,755,647 - DDA3937_RS07765 0.86 -0.5
1,755,755 + -0.8
1,755,755 + +0.1
1,755,755 + +0.4
1,755,755 + +1.2
1,755,756 - -0.1
1,755,756 - +0.0
1,755,756 - +0.9
1,755,756 - -0.1
1,755,784 - -0.7
1,755,784 - +0.6
1,755,830 + +0.0
1,755,859 + +0.2
1,755,860 - -0.1
1,755,860 - -0.6

Or see this region's nucleotide sequence