Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07755 and DDA3937_RS07760 overlap by 8 nucleotides DDA3937_RS07760 and DDA3937_RS07765 are separated by 11 nucleotides DDA3937_RS07765 and DDA3937_RS07770 are separated by 95 nucleotides
DDA3937_RS07755: DDA3937_RS07755 - iron ABC transporter permease, at 1,752,872 to 1,753,894
_RS07755
DDA3937_RS07760: DDA3937_RS07760 - iron ABC transporter permease, at 1,753,887 to 1,754,936
_RS07760
DDA3937_RS07765: DDA3937_RS07765 - ABC transporter ATP-binding protein, at 1,754,948 to 1,755,757
_RS07765
DDA3937_RS07770: DDA3937_RS07770 - RraA family protein, at 1,755,853 to 1,756,488
_RS07770
Position (kb)
1753
1754
1755 Strain fitness (log2 ratio)
-1
0
1 at 1753.048 kb on + strand, within DDA3937_RS07755 at 1753.339 kb on + strand, within DDA3937_RS07755 at 1753.886 kb on + strand at 1754.057 kb on - strand, within DDA3937_RS07760 at 1754.114 kb on - strand, within DDA3937_RS07760 at 1754.259 kb on + strand at 1754.259 kb on + strand, within DDA3937_RS07760 at 1754.260 kb on - strand, within DDA3937_RS07760 at 1754.260 kb on - strand, within DDA3937_RS07760 at 1754.295 kb on + strand, within DDA3937_RS07760 at 1754.295 kb on + strand, within DDA3937_RS07760 at 1754.346 kb on + strand, within DDA3937_RS07760 at 1754.479 kb on - strand, within DDA3937_RS07760 at 1754.910 kb on + strand at 1754.920 kb on + strand at 1754.998 kb on + strand at 1754.998 kb on + strand at 1754.999 kb on - strand at 1755.076 kb on + strand, within DDA3937_RS07765 at 1755.273 kb on + strand, within DDA3937_RS07765 at 1755.429 kb on + strand, within DDA3937_RS07765 at 1755.430 kb on - strand, within DDA3937_RS07765 at 1755.530 kb on - strand, within DDA3937_RS07765 at 1755.530 kb on - strand, within DDA3937_RS07765 at 1755.647 kb on - strand, within DDA3937_RS07765 at 1755.755 kb on + strand at 1755.755 kb on + strand at 1755.755 kb on + strand at 1755.755 kb on + strand at 1755.756 kb on - strand at 1755.756 kb on - strand at 1755.756 kb on - strand at 1755.756 kb on - strand at 1755.784 kb on - strand at 1755.784 kb on - strand at 1755.830 kb on + strand at 1755.859 kb on + strand at 1755.860 kb on - strand at 1755.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 1,753,048 + DDA3937_RS07755 0.17 -0.7 1,753,339 + DDA3937_RS07755 0.46 +0.0 1,753,886 + +0.2 1,754,057 - DDA3937_RS07760 0.16 +0.6 1,754,114 - DDA3937_RS07760 0.22 -0.6 1,754,259 + -1.6 1,754,259 + DDA3937_RS07760 0.35 -0.6 1,754,260 - DDA3937_RS07760 0.36 -0.9 1,754,260 - DDA3937_RS07760 0.36 +0.6 1,754,295 + DDA3937_RS07760 0.39 -1.2 1,754,295 + DDA3937_RS07760 0.39 -1.0 1,754,346 + DDA3937_RS07760 0.44 +0.3 1,754,479 - DDA3937_RS07760 0.56 +0.3 1,754,910 + +0.2 1,754,920 + +0.4 1,754,998 + -1.0 1,754,998 + -0.4 1,754,999 - +0.6 1,755,076 + DDA3937_RS07765 0.16 +0.0 1,755,273 + DDA3937_RS07765 0.40 -0.3 1,755,429 + DDA3937_RS07765 0.59 -0.2 1,755,430 - DDA3937_RS07765 0.60 -0.5 1,755,530 - DDA3937_RS07765 0.72 +0.4 1,755,530 - DDA3937_RS07765 0.72 -1.0 1,755,647 - DDA3937_RS07765 0.86 -0.5 1,755,755 + -0.8 1,755,755 + +0.1 1,755,755 + +0.4 1,755,755 + +1.2 1,755,756 - -0.1 1,755,756 - +0.0 1,755,756 - +0.9 1,755,756 - -0.1 1,755,784 - -0.7 1,755,784 - +0.6 1,755,830 + +0.0 1,755,859 + +0.2 1,755,860 - -0.1 1,755,860 - -0.6
Or see this region's nucleotide sequence