Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00500 and DDA3937_RS00505 are separated by 119 nucleotides DDA3937_RS00505 and DDA3937_RS00510 are separated by 121 nucleotides DDA3937_RS00510 and DDA3937_RS00515 are separated by 163 nucleotides
DDA3937_RS00500: DDA3937_RS00500 - PLP-dependent aminotransferase family protein, at 116,276 to 117,709
_RS00500
DDA3937_RS00505: DDA3937_RS00505 - VOC family protein, at 117,829 to 118,200
_RS00505
DDA3937_RS00510: DDA3937_RS00510 - YafY family transcriptional regulator, at 118,322 to 119,023
_RS00510
DDA3937_RS00515: DDA3937_RS00515 - EamA family transporter, at 119,187 to 120,095
_RS00515
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 116.926 kb on - strand, within DDA3937_RS00500 at 117.106 kb on - strand, within DDA3937_RS00500 at 117.106 kb on - strand, within DDA3937_RS00500 at 117.225 kb on + strand, within DDA3937_RS00500 at 117.226 kb on - strand, within DDA3937_RS00500 at 117.226 kb on - strand, within DDA3937_RS00500 at 117.312 kb on + strand, within DDA3937_RS00500 at 117.312 kb on + strand, within DDA3937_RS00500 at 117.312 kb on + strand, within DDA3937_RS00500 at 117.313 kb on - strand, within DDA3937_RS00500 at 117.313 kb on - strand, within DDA3937_RS00500 at 117.313 kb on - strand, within DDA3937_RS00500 at 117.313 kb on - strand, within DDA3937_RS00500 at 117.313 kb on - strand, within DDA3937_RS00500 at 117.422 kb on + strand, within DDA3937_RS00500 at 117.422 kb on + strand, within DDA3937_RS00500 at 117.422 kb on + strand, within DDA3937_RS00500 at 117.422 kb on + strand, within DDA3937_RS00500 at 117.422 kb on + strand, within DDA3937_RS00500 at 117.423 kb on - strand, within DDA3937_RS00500 at 117.423 kb on - strand, within DDA3937_RS00500 at 117.747 kb on + strand at 117.748 kb on - strand at 117.748 kb on - strand at 117.748 kb on - strand at 117.886 kb on - strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.891 kb on + strand, within DDA3937_RS00505 at 117.892 kb on - strand, within DDA3937_RS00505 at 117.892 kb on - strand, within DDA3937_RS00505 at 117.892 kb on - strand, within DDA3937_RS00505 at 117.892 kb on - strand at 117.893 kb on + strand, within DDA3937_RS00505 at 117.893 kb on + strand, within DDA3937_RS00505 at 117.893 kb on + strand, within DDA3937_RS00505 at 117.894 kb on - strand, within DDA3937_RS00505 at 117.894 kb on - strand, within DDA3937_RS00505 at 117.956 kb on + strand, within DDA3937_RS00505 at 117.957 kb on - strand, within DDA3937_RS00505 at 118.140 kb on - strand, within DDA3937_RS00505 at 118.172 kb on + strand at 118.172 kb on + strand at 118.173 kb on - strand at 118.184 kb on + strand at 118.184 kb on + strand at 118.185 kb on - strand at 118.287 kb on - strand at 118.287 kb on - strand at 118.292 kb on + strand at 118.292 kb on + strand at 118.292 kb on + strand at 118.292 kb on + strand at 118.293 kb on - strand at 118.297 kb on + strand at 118.297 kb on + strand at 118.298 kb on - strand at 118.298 kb on - strand at 118.298 kb on - strand at 118.298 kb on - strand at 118.298 kb on - strand at 118.298 kb on - strand at 118.561 kb on - strand, within DDA3937_RS00510 at 118.848 kb on + strand, within DDA3937_RS00510 at 118.848 kb on + strand, within DDA3937_RS00510 at 118.849 kb on - strand, within DDA3937_RS00510 at 118.849 kb on - strand, within DDA3937_RS00510 at 118.849 kb on - strand, within DDA3937_RS00510 at 118.912 kb on - strand, within DDA3937_RS00510 at 118.912 kb on - strand, within DDA3937_RS00510 at 118.912 kb on - strand at 118.985 kb on + strand at 118.986 kb on - strand at 119.040 kb on + strand at 119.060 kb on + strand at 119.060 kb on + strand at 119.060 kb on + strand at 119.060 kb on + strand at 119.061 kb on - strand at 119.061 kb on - strand at 119.079 kb on + strand at 119.094 kb on + strand at 119.095 kb on - strand at 119.095 kb on - strand at 119.095 kb on - strand at 119.095 kb on - strand at 119.095 kb on - strand at 119.098 kb on - strand at 119.151 kb on + strand at 119.151 kb on + strand at 119.152 kb on - strand at 119.172 kb on - strand at 119.172 kb on - strand at 119.194 kb on + strand at 119.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 116,926 - DDA3937_RS00500 0.45 +0.4 116,926 - DDA3937_RS00500 0.45 +0.9 116,926 - DDA3937_RS00500 0.45 -0.2 116,926 - DDA3937_RS00500 0.45 +1.5 116,926 - DDA3937_RS00500 0.45 -0.6 116,926 - DDA3937_RS00500 0.45 -0.0 116,926 - DDA3937_RS00500 0.45 -1.1 116,926 - DDA3937_RS00500 0.45 -0.8 116,926 - DDA3937_RS00500 0.45 -0.4 117,106 - DDA3937_RS00500 0.58 +0.6 117,106 - DDA3937_RS00500 0.58 +0.4 117,225 + DDA3937_RS00500 0.66 -0.6 117,226 - DDA3937_RS00500 0.66 +0.2 117,226 - DDA3937_RS00500 0.66 -0.1 117,312 + DDA3937_RS00500 0.72 +0.3 117,312 + DDA3937_RS00500 0.72 +0.0 117,312 + DDA3937_RS00500 0.72 +0.7 117,313 - DDA3937_RS00500 0.72 -1.7 117,313 - DDA3937_RS00500 0.72 -1.2 117,313 - DDA3937_RS00500 0.72 -0.7 117,313 - DDA3937_RS00500 0.72 -2.2 117,313 - DDA3937_RS00500 0.72 +0.2 117,422 + DDA3937_RS00500 0.80 +0.3 117,422 + DDA3937_RS00500 0.80 +1.0 117,422 + DDA3937_RS00500 0.80 -0.3 117,422 + DDA3937_RS00500 0.80 -0.4 117,422 + DDA3937_RS00500 0.80 +0.5 117,423 - DDA3937_RS00500 0.80 -0.5 117,423 - DDA3937_RS00500 0.80 +0.6 117,747 + -0.1 117,748 - -0.3 117,748 - +0.1 117,748 - -0.3 117,886 - DDA3937_RS00505 0.15 +0.2 117,891 + DDA3937_RS00505 0.17 +0.6 117,891 + DDA3937_RS00505 0.17 -0.6 117,891 + DDA3937_RS00505 0.17 +0.4 117,891 + DDA3937_RS00505 0.17 -0.8 117,891 + DDA3937_RS00505 0.17 +0.1 117,891 + DDA3937_RS00505 0.17 -0.6 117,892 - DDA3937_RS00505 0.17 +0.2 117,892 - DDA3937_RS00505 0.17 -1.1 117,892 - DDA3937_RS00505 0.17 -0.6 117,892 - +1.2 117,893 + DDA3937_RS00505 0.17 +0.4 117,893 + DDA3937_RS00505 0.17 -1.0 117,893 + DDA3937_RS00505 0.17 +0.3 117,894 - DDA3937_RS00505 0.17 -0.8 117,894 - DDA3937_RS00505 0.17 +0.2 117,956 + DDA3937_RS00505 0.34 +0.1 117,957 - DDA3937_RS00505 0.34 -0.4 118,140 - DDA3937_RS00505 0.84 -0.1 118,172 + -0.1 118,172 + -0.2 118,173 - +0.6 118,184 + +0.8 118,184 + +1.2 118,185 - -1.0 118,287 - -2.0 118,287 - -0.7 118,292 + +0.9 118,292 + -0.6 118,292 + -0.8 118,292 + +0.6 118,293 - -0.1 118,297 + -1.6 118,297 + -0.3 118,298 - -1.0 118,298 - -0.6 118,298 - -0.2 118,298 - -0.4 118,298 - +1.2 118,298 - -0.4 118,561 - DDA3937_RS00510 0.34 -0.0 118,848 + DDA3937_RS00510 0.75 +0.4 118,848 + DDA3937_RS00510 0.75 +0.9 118,849 - DDA3937_RS00510 0.75 -0.1 118,849 - DDA3937_RS00510 0.75 +0.2 118,849 - DDA3937_RS00510 0.75 -0.5 118,912 - DDA3937_RS00510 0.84 +0.8 118,912 - DDA3937_RS00510 0.84 -0.0 118,912 - +1.4 118,985 + -0.9 118,986 - +0.2 119,040 + +0.1 119,060 + +0.2 119,060 + -0.1 119,060 + -0.1 119,060 + -0.2 119,061 - -0.1 119,061 - -0.3 119,079 + -0.1 119,094 + +0.1 119,095 - +1.2 119,095 - -0.2 119,095 - -0.2 119,095 - +1.4 119,095 - +0.1 119,098 - +0.2 119,151 + +0.3 119,151 + -1.1 119,152 - -0.1 119,172 - +0.2 119,172 - -0.1 119,194 + -0.4 119,195 - -0.8
Or see this region's nucleotide sequence