Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07460

Experiment: 3.75mM_PTB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3.75mM_PTB
1,682,453	+		DDA3937_RS07450	0.83	+0.3
1,682,453	+		DDA3937_RS07450	0.83	-1.4
1,682,453	+		DDA3937_RS07450	0.83	-0.5
1,682,454	-		DDA3937_RS07450	0.83	-0.6
1,682,454	-		DDA3937_RS07450	0.83	-0.4
1,682,454	-		DDA3937_RS07450	0.83	+0.8
1,682,455	+		DDA3937_RS07450	0.83	-0.3
1,682,455	+		DDA3937_RS07450	0.83	+0.3
1,682,455	+		DDA3937_RS07450	0.83	+2.1
1,682,456	-		DDA3937_RS07450	0.83	-0.9
1,682,456	-		DDA3937_RS07450	0.83	+0.2
1,682,456	-		DDA3937_RS07450	0.83	-0.3
1,682,456	-		DDA3937_RS07450	0.83	-0.5
1,682,456	-		DDA3937_RS07450	0.83	+1.0
1,682,572	+		DDA3937_RS07450	0.90	+0.3
1,682,572	+				-0.2
1,682,573	-		DDA3937_RS07450	0.90	+0.4
1,682,573	-				-0.0
1,683,073	-		DDA3937_RS07455	0.50	-1.0
1,683,073	-		DDA3937_RS07455	0.50	-0.9
1,683,176	-		DDA3937_RS07455	0.65	+0.6
1,683,176	-		DDA3937_RS07455	0.65	+0.2
1,683,176	-		DDA3937_RS07455	0.65	+0.6
1,683,176	-		DDA3937_RS07455	0.65	+1.3
1,683,194	+		DDA3937_RS07455	0.68	-0.4
1,683,195	-		DDA3937_RS07455	0.68	+0.1
1,683,195	-		DDA3937_RS07455	0.68	-0.0
1,683,195	-				+1.8
1,683,195	-		DDA3937_RS07455	0.68	-2.2
1,683,228	+		DDA3937_RS07455	0.73	+0.5
1,683,228	+		DDA3937_RS07455	0.73	+0.2
1,683,228	+		DDA3937_RS07455	0.73	-0.3
1,683,228	+		DDA3937_RS07455	0.73	-0.2
1,683,228	+		DDA3937_RS07455	0.73	-0.8
1,683,229	-		DDA3937_RS07455	0.74	-0.1
1,683,229	-		DDA3937_RS07455	0.74	-1.1
1,683,300	+		DDA3937_RS07455	0.84	+0.0
1,683,300	+		DDA3937_RS07455	0.84	-1.5
1,683,411	+				+0.3
1,683,412	-				-0.5
1,683,412	-				-0.1
1,683,458	+				-0.3
1,683,458	+				+0.2
1,683,668	-		DDA3937_RS07460	0.18	-0.0
1,683,693	-		DDA3937_RS07460	0.20	+0.2
1,683,765	-		DDA3937_RS07460	0.25	+0.5
1,683,795	+		DDA3937_RS07460	0.27	+0.5
1,683,796	-		DDA3937_RS07460	0.27	+0.4
1,683,796	-		DDA3937_RS07460	0.27	-0.4
1,683,796	-		DDA3937_RS07460	0.27	-0.3
1,683,837	+				+1.3
1,683,838	-		DDA3937_RS07460	0.30	-1.8
1,683,838	-		DDA3937_RS07460	0.30	-1.1
1,683,838	-		DDA3937_RS07460	0.30	-0.2
1,683,838	-		DDA3937_RS07460	0.30	-0.0
1,683,855	+		DDA3937_RS07460	0.31	+2.1
1,683,855	+		DDA3937_RS07460	0.31	+0.6
1,683,855	+		DDA3937_RS07460	0.31	+0.3
1,683,855	+		DDA3937_RS07460	0.31	-1.9
1,683,855	+		DDA3937_RS07460	0.31	-0.1
1,683,856	-		DDA3937_RS07460	0.31	-0.8
1,683,856	-		DDA3937_RS07460	0.31	-0.6
1,683,856	-		DDA3937_RS07460	0.31	-0.1
1,683,856	-		DDA3937_RS07460	0.31	+0.1
1,683,921	+		DDA3937_RS07460	0.35	+0.6
1,683,921	+		DDA3937_RS07460	0.35	+0.5
1,683,921	+		DDA3937_RS07460	0.35	+0.7
1,683,945	+		DDA3937_RS07460	0.37	+0.8
1,683,945	+		DDA3937_RS07460	0.37	+0.8
1,683,981	+		DDA3937_RS07460	0.40	+0.5
1,683,981	+				-1.5
1,683,981	+		DDA3937_RS07460	0.40	-0.7
1,683,981	+		DDA3937_RS07460	0.40	-1.3
1,683,981	+		DDA3937_RS07460	0.40	+0.4
1,683,982	-		DDA3937_RS07460	0.40	+0.5
1,683,996	+		DDA3937_RS07460	0.41	-0.8
1,683,997	-		DDA3937_RS07460	0.41	-1.7
1,683,997	-		DDA3937_RS07460	0.41	+0.2
1,683,997	-		DDA3937_RS07460	0.41	+1.4
1,684,006	+		DDA3937_RS07460	0.41	+0.3
1,684,084	+		DDA3937_RS07460	0.47	+0.8
1,684,085	-		DDA3937_RS07460	0.47	+0.0
1,684,085	-		DDA3937_RS07460	0.47	+0.1
1,684,086	+		DDA3937_RS07460	0.47	+0.4
1,684,087	-		DDA3937_RS07460	0.47	-0.2
1,684,087	-		DDA3937_RS07460	0.47	-0.9
1,684,240	+		DDA3937_RS07460	0.58	+0.4
1,684,241	-		DDA3937_RS07460	0.58	-0.2
1,684,311	+		DDA3937_RS07460	0.63	-0.2
1,684,312	-		DDA3937_RS07460	0.63	-0.5
1,684,312	-		DDA3937_RS07460	0.63	+0.0
1,684,312	-		DDA3937_RS07460	0.63	-0.5
1,684,387	-		DDA3937_RS07460	0.68	-0.8
1,684,487	+		DDA3937_RS07460	0.75	-0.6
1,684,487	+		DDA3937_RS07460	0.75	-1.8
1,684,488	-		DDA3937_RS07460	0.75	-0.1
1,684,488	-		DDA3937_RS07460	0.75	+0.6
1,684,488	-		DDA3937_RS07460	0.75	+0.0
1,684,503	+		DDA3937_RS07460	0.76	+0.3
1,684,503	+		DDA3937_RS07460	0.76	+0.4
1,684,504	-		DDA3937_RS07460	0.76	+0.5
1,684,504	-		DDA3937_RS07460	0.76	+0.8
1,684,504	-		DDA3937_RS07460	0.76	-1.5
1,684,504	-		DDA3937_RS07460	0.76	-0.9
1,684,504	-		DDA3937_RS07460	0.76	+0.3
1,684,506	+		DDA3937_RS07460	0.76	-0.4
1,684,555	-		DDA3937_RS07460	0.80	-0.4
1,684,567	-		DDA3937_RS07460	0.80	-1.2
1,684,567	-		DDA3937_RS07460	0.80	+0.8
1,684,567	-		DDA3937_RS07460	0.80	+0.0
1,684,622	-		DDA3937_RS07460	0.84	-0.1
1,684,666	-		DDA3937_RS07460	0.87	+1.1
1,684,794	-				-0.5
1,684,840	+				-0.2
1,684,840	+				-0.2
1,684,840	+				-1.2
1,684,841	-				+1.2
1,684,841	-				-0.0
1,684,841	-				-0.5
1,684,867	+				-0.2
1,684,867	+				-1.7
1,684,868	-				-0.6
1,684,869	+				+0.1
1,684,870	-				+1.1
1,684,870	-				+0.4
1,684,870	-				+0.4
1,684,870	-				-1.4
1,684,883	-				-0.2
1,685,158	+		DDA3937_RS07465	0.31	+0.4
1,685,488	+		DDA3937_RS07465	0.66	-0.2
1,685,488	+		DDA3937_RS07465	0.66	-0.3
1,685,489	-				+0.5
1,685,489	-		DDA3937_RS07465	0.66	+0.3
1,685,489	-		DDA3937_RS07465	0.66	+1.5
1,685,489	-		DDA3937_RS07465	0.66	-0.2
1,685,489	-		DDA3937_RS07465	0.66	+0.8
1,685,665	+		DDA3937_RS07465	0.84	+0.6
1,685,666	-				-2.0
1,685,806	+				-0.7
1,685,806	+				+0.2
1,685,806	+				+0.4
1,685,807	-				-0.5
1,685,828	-				-0.3