Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13975

Experiment: 3.75mM_PTB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3.75mM_PTB
3,188,651	+		DDA3937_RS23270	0.62	-0.6
3,188,654	+		DDA3937_RS23270	0.63	+0.1
3,188,654	+		DDA3937_RS23270	0.63	-0.9
3,188,655	-		DDA3937_RS23270	0.63	+0.3
3,188,664	+		DDA3937_RS23270	0.67	+0.0
3,188,775	+				-0.2
3,188,775	+				-0.4
3,188,787	+		DDA3937_RS13965	0.11	-1.1
3,188,847	-		DDA3937_RS13965	0.30	-0.0
3,188,847	-		DDA3937_RS13965	0.30	-0.1
3,188,847	-		DDA3937_RS13965	0.30	+0.1
3,188,847	-		DDA3937_RS13965	0.30	-0.3
3,188,876	-		DDA3937_RS13965	0.40	-0.2
3,188,876	-		DDA3937_RS13965	0.40	-1.6
3,188,990	+		DDA3937_RS13965	0.76	-1.3
3,189,049	+				+1.0
3,189,049	+				+0.0
3,189,051	+				-1.2
3,189,123	-		DDA3937_RS13970	0.23	-0.6
3,189,123	-		DDA3937_RS13970	0.23	-0.3
3,189,223	+		DDA3937_RS13970	0.65	-2.1
3,189,223	+		DDA3937_RS13970	0.65	-0.3
3,189,248	+		DDA3937_RS13970	0.76	+1.1
3,189,248	+		DDA3937_RS13970	0.76	-0.3
3,189,248	+		DDA3937_RS13970	0.76	-0.6
3,189,261	-		DDA3937_RS13970	0.81	-0.5
3,189,326	-				+0.2
3,189,326	-				-0.6
3,189,346	-				+0.7
3,189,348	+				+0.2
3,189,349	-				+1.1
3,189,349	-				-0.7
3,189,354	+				-0.7
3,189,355	-				-0.9
3,189,355	-				-0.2
3,189,359	+				+0.8
3,189,444	+				+0.2
3,189,446	+				+0.4
3,189,534	-				+0.5
3,189,583	-				-1.0
3,189,608	+				-1.5
3,189,609	-				-2.3
3,189,628	-				+0.1
3,189,638	+				+0.7
3,189,639	-				-0.1
3,189,678	+				-1.0
3,189,680	+				+0.2
3,189,680	+				-2.6
3,189,722	+		DDA3937_RS13975	0.11	-0.7
3,189,722	+		DDA3937_RS13975	0.11	+0.7
3,189,723	-		DDA3937_RS13975	0.11	+0.2
3,189,723	-		DDA3937_RS13975	0.11	-0.0
3,189,723	-		DDA3937_RS13975	0.11	+0.3
3,189,723	-		DDA3937_RS13975	0.11	-0.2
3,189,723	-		DDA3937_RS13975	0.11	+0.3
3,189,723	-				-0.3
3,189,723	-		DDA3937_RS13975	0.11	-1.3
3,189,723	-		DDA3937_RS13975	0.11	-1.6
3,189,782	-		DDA3937_RS13975	0.17	+0.6
3,189,782	-		DDA3937_RS13975	0.17	+0.1
3,189,782	-		DDA3937_RS13975	0.17	-0.1
3,189,782	-		DDA3937_RS13975	0.17	+0.1
3,189,782	-		DDA3937_RS13975	0.17	+0.2
3,189,809	+				-0.3
3,189,809	+		DDA3937_RS13975	0.20	-0.4
3,189,809	+		DDA3937_RS13975	0.20	+0.5
3,189,810	-		DDA3937_RS13975	0.20	-1.3
3,189,846	+		DDA3937_RS13975	0.24	+1.3
3,189,846	+		DDA3937_RS13975	0.24	-0.9
3,189,846	+		DDA3937_RS13975	0.24	+0.2
3,189,899	+		DDA3937_RS13975	0.30	-0.0
3,189,906	+		DDA3937_RS13975	0.30	-0.1
3,189,988	+		DDA3937_RS13975	0.39	+0.1
3,189,988	+		DDA3937_RS13975	0.39	+0.4
3,189,989	-		DDA3937_RS13975	0.39	+0.9
3,190,060	-		DDA3937_RS13975	0.47	-1.2
3,190,148	-		DDA3937_RS13975	0.56	+0.1
3,190,177	-		DDA3937_RS13975	0.59	+0.3
3,190,177	-		DDA3937_RS13975	0.59	+0.1
3,190,177	-		DDA3937_RS13975	0.59	+1.3
3,190,179	-		DDA3937_RS13975	0.59	-0.6
3,190,185	+		DDA3937_RS13975	0.60	-0.3
3,190,185	+		DDA3937_RS13975	0.60	-0.7
3,190,186	-		DDA3937_RS13975	0.60	+0.2
3,190,186	-		DDA3937_RS13975	0.60	+0.1
3,190,186	-		DDA3937_RS13975	0.60	-0.2
3,190,225	+		DDA3937_RS13975	0.64	+1.7
3,190,225	+		DDA3937_RS13975	0.64	-0.8
3,190,226	-		DDA3937_RS13975	0.64	-1.3
3,190,244	+		DDA3937_RS13975	0.66	+0.1
3,190,244	+		DDA3937_RS13975	0.66	-0.7
3,190,245	-		DDA3937_RS13975	0.66	+0.7
3,190,245	-		DDA3937_RS13975	0.66	+1.4
3,190,305	+		DDA3937_RS13975	0.73	+0.3
3,190,305	+		DDA3937_RS13975	0.73	-0.7
3,190,306	-		DDA3937_RS13975	0.73	+0.3
3,190,317	+		DDA3937_RS13975	0.74	-0.0
3,190,319	+		DDA3937_RS13975	0.74	+0.6
3,190,319	+		DDA3937_RS13975	0.74	+0.3
3,190,320	-		DDA3937_RS13975	0.74	-0.9
3,190,320	-		DDA3937_RS13975	0.74	+0.5
3,190,442	+		DDA3937_RS13975	0.87	+0.2
3,190,442	+		DDA3937_RS13975	0.87	-0.1
3,190,447	-		DDA3937_RS13975	0.88	-0.2
3,190,557	+				+0.4
3,190,557	+				+0.5
3,190,557	+				+0.1
3,190,557	+				-0.0
3,190,662	+				-0.0
3,190,662	+				-0.0
3,190,662	+				+0.3
3,190,663	-				-0.8
3,190,666	+				+0.4
3,190,666	+				-0.9
3,190,667	-				-1.4
3,190,667	-				-0.3
3,190,715	-				+0.0
3,190,766	-				+0.3
3,190,776	-				+0.0
3,190,820	-				-0.0
3,190,822	+				+0.3
3,190,822	+				-1.4
3,190,822	+				-0.3
3,190,822	+				-0.9
3,190,823	-				+0.3
3,190,823	-				-0.1
3,190,823	-				-1.6
3,190,823	-				-0.4
3,190,823	-				+0.7
3,190,838	+				-1.9
3,190,864	+				+0.7
3,190,864	+				-1.1
3,190,864	+				+0.7
3,190,866	+				+0.1
3,190,866	+				-0.9
3,190,866	+				-0.4
3,190,866	+				+0.3
3,190,866	+				+0.0
3,190,866	+				-0.5
3,190,866	+				-0.9
3,190,866	+				-0.2
3,190,866	+				+0.7
3,190,866	+				-0.5
3,190,866	+				-1.6
3,190,867	-				+0.1
3,190,867	-				-0.4
3,190,867	-				+0.1
3,190,867	-				+0.2
3,190,867	-				+0.3
3,190,867	-				-0.5
3,190,867	-				+1.1
3,190,898	-				-1.9
3,190,908	-				-0.1
3,190,912	+				-0.2
3,190,912	+				+0.3
3,190,912	+				+0.2
3,190,912	+				-1.3
3,190,913	-				+0.2
3,190,913	-				-0.4
3,190,913	-				-0.5
3,190,913	-				-1.3
3,190,913	-				+0.1
3,190,918	+				+1.1
3,190,918	+				+0.6
3,190,919	-				+0.4
3,190,919	-				-0.2
3,190,937	+				+0.7
3,190,937	+				-0.9
3,190,937	+				+0.3
3,190,937	+				-0.1
3,190,938	-				-1.1
3,190,938	-				-0.0
3,190,938	-				+1.3
3,190,938	-				-1.8
3,190,938	-				+0.0
3,190,968	-				+0.7
3,190,986	+				+0.8
3,190,986	+				+0.1
3,190,987	-				-1.5
3,190,987	-				-2.1
3,191,004	+				-2.3
3,191,004	+				-0.5
3,191,004	+				+1.3
3,191,005	-				-1.3
3,191,005	-				-0.0
3,191,005	-				-0.0
3,191,032	+				-0.9
3,191,033	-				-0.3
3,191,043	+				-1.3
3,191,043	+				-1.5
3,191,044	-				-0.7
3,191,044	-				-0.1
3,191,044	-				+0.6
3,191,044	-				+0.1
3,191,100	-				-0.8
3,191,103	+				-0.8
3,191,130	-				+0.0
3,191,187	+				-1.3
3,191,187	+				-0.9
3,191,188	-				+0.1
3,191,188	-				+1.0
3,191,193	+				+0.4
3,191,194	-				+0.6
3,191,194	-				+0.5
3,191,194	-				+0.6
3,191,194	-				+1.7
3,191,194	-				+0.7
3,191,197	-				+1.1
3,191,201	+				-0.9
3,191,207	+				+0.3
3,191,295	+				-0.9
3,191,317	+				+0.4
3,191,317	+				-0.5
3,191,391	+				-0.6
3,191,487	+		DDA3937_RS13980	0.16	+1.1
3,191,487	+		DDA3937_RS13980	0.16	-0.2
3,191,504	+		DDA3937_RS13980	0.17	-1.1
3,191,504	+		DDA3937_RS13980	0.17	+0.7
3,191,526	+		DDA3937_RS13980	0.19	+0.2
3,191,527	-		DDA3937_RS13980	0.19	-0.6
3,191,527	-		DDA3937_RS13980	0.19	-1.0
3,191,541	+		DDA3937_RS13980	0.20	+2.3
3,191,541	+		DDA3937_RS13980	0.20	-1.5
3,191,541	+		DDA3937_RS13980	0.20	+0.7
3,191,547	+		DDA3937_RS13980	0.20	-0.5
3,191,547	+		DDA3937_RS13980	0.20	+1.0
3,191,548	-		DDA3937_RS13980	0.20	+0.7