Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01190 and DDA3937_RS01195 overlap by 1 nucleotides DDA3937_RS01195 and DDA3937_RS01200 are separated by 91 nucleotides DDA3937_RS01200 and DDA3937_RS01205 are separated by 187 nucleotides
DDA3937_RS01190: DDA3937_RS01190 - uroporphyrinogen decarboxylase, at 271,322 to 272,395
_RS01190
DDA3937_RS01195: DDA3937_RS01195 - deoxyribonuclease V, at 272,395 to 273,069
_RS01195
DDA3937_RS01200: DDA3937_RS01200 - YjaG family protein, at 273,161 to 273,751
_RS01200
DDA3937_RS01205: DDA3937_RS01205 - DNA-binding protein HU-alpha, at 273,939 to 274,211
_RS01205
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 272.400 kb on + strand at 272.578 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.602 kb on - strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 273.067 kb on + strand at 273.068 kb on - strand at 273.068 kb on - strand at 273.072 kb on + strand at 273.073 kb on - strand at 273.104 kb on + strand at 273.104 kb on + strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.106 kb on + strand at 273.107 kb on - strand at 273.144 kb on + strand at 273.144 kb on + strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.147 kb on + strand at 273.147 kb on + strand at 273.148 kb on - strand at 273.155 kb on + strand at 273.165 kb on + strand at 273.166 kb on - strand at 273.170 kb on - strand at 273.217 kb on + strand at 273.217 kb on + strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.223 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.414 kb on - strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.431 kb on + strand, within DDA3937_RS01200 at 273.432 kb on - strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.722 kb on - strand at 273.725 kb on - strand at 273.743 kb on + strand at 273.744 kb on - strand at 273.744 kb on - strand at 273.769 kb on + strand at 273.770 kb on - strand at 273.792 kb on + strand at 273.793 kb on - strand at 273.821 kb on + strand at 273.861 kb on + strand at 273.879 kb on + strand at 273.879 kb on + strand at 273.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 272,400 + -0.1 272,578 + DDA3937_RS01195 0.27 -0.2 272,601 + DDA3937_RS01195 0.31 -0.2 272,601 + DDA3937_RS01195 0.31 +0.8 272,602 - DDA3937_RS01195 0.31 -0.1 272,611 + DDA3937_RS01195 0.32 +0.3 272,611 + DDA3937_RS01195 0.32 +0.8 272,611 + DDA3937_RS01195 0.32 -1.2 272,611 + DDA3937_RS01195 0.32 -0.4 272,611 + DDA3937_RS01195 0.32 -1.0 272,611 + DDA3937_RS01195 0.32 +0.1 272,611 + DDA3937_RS01195 0.32 -0.0 272,611 + DDA3937_RS01195 0.32 +0.6 272,611 + DDA3937_RS01195 0.32 +0.9 272,611 + DDA3937_RS01195 0.32 +0.5 272,611 + +1.2 272,612 - DDA3937_RS01195 0.32 -0.3 272,612 - DDA3937_RS01195 0.32 -0.5 272,612 - DDA3937_RS01195 0.32 -0.1 272,612 - DDA3937_RS01195 0.32 +0.5 272,612 - DDA3937_RS01195 0.32 -1.9 272,612 - DDA3937_RS01195 0.32 -0.7 272,612 - DDA3937_RS01195 0.32 -1.0 272,612 - DDA3937_RS01195 0.32 +1.2 272,613 + DDA3937_RS01195 0.32 -1.4 272,613 + DDA3937_RS01195 0.32 +0.6 272,715 - DDA3937_RS01195 0.47 +0.5 272,715 - DDA3937_RS01195 0.47 +0.4 272,756 + DDA3937_RS01195 0.53 -0.7 272,756 + DDA3937_RS01195 0.53 -0.1 273,067 + -0.2 273,068 - -0.3 273,068 - +0.9 273,072 + -2.8 273,073 - +1.2 273,104 + -0.1 273,104 + -0.2 273,105 - +0.3 273,105 - -0.8 273,105 - +0.7 273,106 + -0.5 273,107 - -0.7 273,144 + -1.0 273,144 + +0.6 273,145 - -0.1 273,145 - -0.8 273,145 - -0.5 273,145 - +0.2 273,147 + -1.5 273,147 + +0.6 273,148 - +0.1 273,155 + -0.5 273,165 + +1.2 273,166 - +0.0 273,170 - +0.3 273,217 + +0.3 273,217 + -0.4 273,218 - -0.3 273,218 - +1.2 273,218 - +0.6 273,223 + DDA3937_RS01200 0.10 +1.4 273,244 + DDA3937_RS01200 0.14 +0.8 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 -0.3 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 +0.8 273,244 + DDA3937_RS01200 0.14 -0.2 273,244 + DDA3937_RS01200 0.14 +0.5 273,244 + DDA3937_RS01200 0.14 +2.3 273,244 + DDA3937_RS01200 0.14 +0.1 273,244 + DDA3937_RS01200 0.14 +1.0 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 -1.3 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 -0.2 273,244 + DDA3937_RS01200 0.14 -2.3 273,244 + DDA3937_RS01200 0.14 +0.3 273,244 + DDA3937_RS01200 0.14 +0.7 273,244 + DDA3937_RS01200 0.14 -1.8 273,244 + DDA3937_RS01200 0.14 -1.2 273,244 + DDA3937_RS01200 0.14 -0.3 273,244 + DDA3937_RS01200 0.14 -0.7 273,245 - DDA3937_RS01200 0.14 +0.1 273,245 - DDA3937_RS01200 0.14 +0.2 273,245 - -1.6 273,245 - DDA3937_RS01200 0.14 +0.8 273,245 - DDA3937_RS01200 0.14 +1.0 273,245 - DDA3937_RS01200 0.14 -0.0 273,245 - DDA3937_RS01200 0.14 -0.4 273,245 - DDA3937_RS01200 0.14 +0.1 273,245 - DDA3937_RS01200 0.14 +0.4 273,245 - DDA3937_RS01200 0.14 +0.5 273,245 - DDA3937_RS01200 0.14 +0.3 273,245 - DDA3937_RS01200 0.14 -0.4 273,245 - DDA3937_RS01200 0.14 -0.3 273,245 - DDA3937_RS01200 0.14 +0.5 273,257 + DDA3937_RS01200 0.16 +0.3 273,257 + DDA3937_RS01200 0.16 +0.6 273,257 + DDA3937_RS01200 0.16 -0.0 273,257 + DDA3937_RS01200 0.16 +0.7 273,257 + DDA3937_RS01200 0.16 +0.6 273,258 - DDA3937_RS01200 0.16 +0.6 273,258 - DDA3937_RS01200 0.16 -1.2 273,258 - DDA3937_RS01200 0.16 -0.5 273,414 - DDA3937_RS01200 0.43 -0.1 273,422 + DDA3937_RS01200 0.44 -0.2 273,422 + DDA3937_RS01200 0.44 -0.8 273,422 + DDA3937_RS01200 0.44 -0.9 273,422 + DDA3937_RS01200 0.44 +1.5 273,422 + DDA3937_RS01200 0.44 +0.2 273,422 + DDA3937_RS01200 0.44 -0.0 273,422 + DDA3937_RS01200 0.44 +0.8 273,423 - DDA3937_RS01200 0.44 +0.1 273,423 - DDA3937_RS01200 0.44 -0.2 273,423 - DDA3937_RS01200 0.44 -0.2 273,423 - DDA3937_RS01200 0.44 +0.4 273,423 - DDA3937_RS01200 0.44 -0.7 273,423 - DDA3937_RS01200 0.44 -0.4 273,423 - DDA3937_RS01200 0.44 +2.3 273,429 + DDA3937_RS01200 0.45 +0.9 273,429 + DDA3937_RS01200 0.45 -0.1 273,429 + DDA3937_RS01200 0.45 +0.5 273,429 + DDA3937_RS01200 0.45 -0.4 273,429 + DDA3937_RS01200 0.45 +0.1 273,429 + DDA3937_RS01200 0.45 -2.2 273,430 - DDA3937_RS01200 0.46 -0.6 273,430 - DDA3937_RS01200 0.46 -1.7 273,430 - DDA3937_RS01200 0.46 -1.2 273,430 - DDA3937_RS01200 0.46 +0.7 273,430 - DDA3937_RS01200 0.46 -0.7 273,430 - DDA3937_RS01200 0.46 -1.8 273,430 - DDA3937_RS01200 0.46 -1.5 273,431 + DDA3937_RS01200 0.46 +1.0 273,432 - DDA3937_RS01200 0.46 +0.8 273,684 + DDA3937_RS01200 0.88 +0.3 273,684 + DDA3937_RS01200 0.88 +0.7 273,685 - DDA3937_RS01200 0.89 -0.4 273,685 - DDA3937_RS01200 0.89 -0.9 273,685 - DDA3937_RS01200 0.89 -0.1 273,722 - +0.3 273,725 - -0.4 273,743 + +0.4 273,744 - -0.6 273,744 - -0.5 273,769 + +0.6 273,770 - +0.8 273,792 + -1.4 273,793 - -1.3 273,821 + -1.5 273,861 + -0.5 273,879 + -1.8 273,879 + -0.2 273,881 + -0.5
Or see this region's nucleotide sequence