Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05430

Experiment: 1.88mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05425 and DDA3937_RS05430 are separated by 27 nucleotidesDDA3937_RS05430 and DDA3937_RS05435 are separated by 81 nucleotides DDA3937_RS05425: DDA3937_RS05425 - phosphate response regulator transcription factor PhoB, at 1,212,381 to 1,213,070 _RS05425 DDA3937_RS05430: DDA3937_RS05430 - phosphate regulon sensor histidine kinase PhoR, at 1,213,098 to 1,214,420 _RS05430 DDA3937_RS05435: DDA3937_RS05435 - phosphate ABC transporter substrate-binding protein, at 1,214,502 to 1,215,479 _RS05435 Position (kb) 1213 1214 1215Strain fitness (log2 ratio) -2 -1 0 1 2at 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.101 kb on + strandat 1212.102 kb on - strandat 1212.102 kb on - strandat 1212.140 kb on + strandat 1212.140 kb on + strandat 1212.142 kb on + strandat 1212.143 kb on - strandat 1212.143 kb on - strandat 1212.143 kb on - strandat 1212.143 kb on - strandat 1212.143 kb on - strandat 1212.155 kb on + strandat 1212.156 kb on - strandat 1212.170 kb on - strandat 1212.172 kb on + strandat 1212.172 kb on + strandat 1212.173 kb on - strandat 1212.173 kb on - strandat 1212.173 kb on - strandat 1212.173 kb on - strandat 1212.178 kb on + strandat 1212.179 kb on - strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.226 kb on + strandat 1212.227 kb on - strandat 1212.227 kb on - strandat 1212.227 kb on - strandat 1212.227 kb on - strandat 1212.227 kb on - strandat 1212.230 kb on - strandat 1212.230 kb on - strandat 1212.230 kb on - strandat 1212.336 kb on - strandat 1212.336 kb on - strandat 1212.336 kb on - strandat 1212.392 kb on + strandat 1212.392 kb on + strandat 1212.392 kb on + strandat 1212.483 kb on + strand, within DDA3937_RS05425at 1212.517 kb on - strand, within DDA3937_RS05425at 1212.684 kb on + strand, within DDA3937_RS05425at 1212.684 kb on + strand, within DDA3937_RS05425at 1212.684 kb on + strand, within DDA3937_RS05425at 1212.685 kb on - strand, within DDA3937_RS05425at 1212.838 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.865 kb on + strand, within DDA3937_RS05425at 1212.866 kb on - strand, within DDA3937_RS05425at 1212.866 kb on - strand, within DDA3937_RS05425at 1212.878 kb on + strand, within DDA3937_RS05425at 1212.878 kb on + strand, within DDA3937_RS05425at 1212.898 kb on + strand, within DDA3937_RS05425at 1212.898 kb on + strand, within DDA3937_RS05425at 1212.898 kb on + strand, within DDA3937_RS05425at 1212.898 kb on + strand, within DDA3937_RS05425at 1212.898 kb on + strand, within DDA3937_RS05425at 1212.899 kb on - strand, within DDA3937_RS05425at 1212.899 kb on - strand, within DDA3937_RS05425at 1212.899 kb on - strand, within DDA3937_RS05425at 1212.899 kb on - strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.900 kb on + strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.901 kb on - strand, within DDA3937_RS05425at 1212.902 kb on + strand, within DDA3937_RS05425at 1212.902 kb on + strand, within DDA3937_RS05425at 1212.902 kb on + strand, within DDA3937_RS05425at 1212.902 kb on + strand, within DDA3937_RS05425at 1212.902 kb on + strand, within DDA3937_RS05425at 1212.903 kb on + strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.903 kb on - strand, within DDA3937_RS05425at 1212.928 kb on + strand, within DDA3937_RS05425at 1212.928 kb on + strand, within DDA3937_RS05425at 1212.928 kb on + strand, within DDA3937_RS05425at 1212.929 kb on - strand, within DDA3937_RS05425at 1212.929 kb on - strand, within DDA3937_RS05425at 1212.929 kb on - strand, within DDA3937_RS05425at 1212.945 kb on + strand, within DDA3937_RS05425at 1212.945 kb on + strand, within DDA3937_RS05425at 1212.945 kb on + strand, within DDA3937_RS05425at 1212.945 kb on + strand, within DDA3937_RS05425at 1212.945 kb on + strand, within DDA3937_RS05425at 1212.974 kb on + strand, within DDA3937_RS05425at 1213.065 kb on + strandat 1213.066 kb on - strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.102 kb on + strandat 1213.103 kb on - strandat 1213.103 kb on - strandat 1213.103 kb on - strandat 1213.103 kb on - strandat 1213.185 kb on + strandat 1213.240 kb on - strand, within DDA3937_RS05430at 1213.240 kb on - strand, within DDA3937_RS05430at 1213.240 kb on - strandat 1213.326 kb on + strand, within DDA3937_RS05430at 1213.336 kb on - strand, within DDA3937_RS05430at 1213.467 kb on - strand, within DDA3937_RS05430at 1213.560 kb on + strand, within DDA3937_RS05430at 1213.560 kb on + strand, within DDA3937_RS05430at 1213.560 kb on + strand, within DDA3937_RS05430at 1213.561 kb on - strand, within DDA3937_RS05430at 1213.561 kb on - strand, within DDA3937_RS05430at 1213.622 kb on - strand, within DDA3937_RS05430at 1213.641 kb on + strand, within DDA3937_RS05430at 1213.642 kb on - strand, within DDA3937_RS05430at 1213.642 kb on - strand, within DDA3937_RS05430at 1213.770 kb on + strand, within DDA3937_RS05430at 1214.076 kb on + strand, within DDA3937_RS05430at 1214.076 kb on + strand, within DDA3937_RS05430at 1214.076 kb on + strand, within DDA3937_RS05430at 1214.077 kb on - strand, within DDA3937_RS05430at 1214.077 kb on - strand, within DDA3937_RS05430at 1214.077 kb on - strand, within DDA3937_RS05430at 1214.077 kb on - strand, within DDA3937_RS05430at 1214.078 kb on + strand, within DDA3937_RS05430at 1214.078 kb on + strand, within DDA3937_RS05430at 1214.094 kb on - strand, within DDA3937_RS05430at 1214.094 kb on - strand, within DDA3937_RS05430at 1214.421 kb on + strandat 1214.421 kb on + strandat 1214.464 kb on + strandat 1214.482 kb on + strandat 1214.483 kb on - strandat 1214.576 kb on + strandat 1214.577 kb on - strandat 1214.646 kb on + strand, within DDA3937_RS05435at 1214.661 kb on + strand, within DDA3937_RS05435at 1214.796 kb on + strand, within DDA3937_RS05435at 1215.001 kb on - strand, within DDA3937_RS05435at 1215.028 kb on - strand, within DDA3937_RS05435at 1215.028 kb on - strand, within DDA3937_RS05435at 1215.213 kb on + strand, within DDA3937_RS05435at 1215.213 kb on + strand, within DDA3937_RS05435at 1215.259 kb on - strand, within DDA3937_RS05435at 1215.259 kb on - strand, within DDA3937_RS05435at 1215.267 kb on + strand, within DDA3937_RS05435at 1215.267 kb on + strand, within DDA3937_RS05435at 1215.267 kb on + strand, within DDA3937_RS05435at 1215.268 kb on - strand, within DDA3937_RS05435at 1215.268 kb on - strand, within DDA3937_RS05435at 1215.279 kb on + strand, within DDA3937_RS05435at 1215.279 kb on + strand, within DDA3937_RS05435at 1215.279 kb on + strand, within DDA3937_RS05435at 1215.280 kb on - strand, within DDA3937_RS05435at 1215.280 kb on - strand, within DDA3937_RS05435at 1215.280 kb on - strand, within DDA3937_RS05435at 1215.287 kb on + strand, within DDA3937_RS05435at 1215.287 kb on + strand, within DDA3937_RS05435at 1215.381 kb on + strand, within DDA3937_RS05435

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Per-strain Table

Position Strand Gene LocusTag Fraction 1.88mM_PTB
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1,212,101 + -0.3
1,212,101 + +0.8
1,212,101 + +0.9
1,212,101 + +0.9
1,212,101 + +0.0
1,212,101 + +0.6
1,212,101 + +0.9
1,212,101 + -0.0
1,212,101 + -0.1
1,212,102 - +0.3
1,212,102 - +0.5
1,212,140 + +0.3
1,212,140 + -0.1
1,212,142 + -0.7
1,212,143 - +1.9
1,212,143 - -2.1
1,212,143 - -0.7
1,212,143 - +0.8
1,212,143 - +0.2
1,212,155 + -0.9
1,212,156 - -1.9
1,212,170 - +0.6
1,212,172 + +0.2
1,212,172 + +0.1
1,212,173 - -0.6
1,212,173 - -0.4
1,212,173 - +0.2
1,212,173 - -0.1
1,212,178 + +2.5
1,212,179 - -0.1
1,212,226 + -1.1
1,212,226 + -0.3
1,212,226 + +1.0
1,212,226 + +2.1
1,212,226 + -0.5
1,212,226 + +0.2
1,212,226 + +0.6
1,212,227 - +0.1
1,212,227 - -1.2
1,212,227 - +0.0
1,212,227 - -2.2
1,212,227 - +0.7
1,212,230 - +0.2
1,212,230 - -0.8
1,212,230 - -0.5
1,212,336 - -0.1
1,212,336 - +0.9
1,212,336 - +0.9
1,212,392 + +0.1
1,212,392 + +0.1
1,212,392 + -0.1
1,212,483 + DDA3937_RS05425 0.15 +0.3
1,212,517 - DDA3937_RS05425 0.20 +0.3
1,212,684 + DDA3937_RS05425 0.44 +0.0
1,212,684 + DDA3937_RS05425 0.44 -0.4
1,212,684 + DDA3937_RS05425 0.44 +1.2
1,212,685 - DDA3937_RS05425 0.44 -1.4
1,212,838 + DDA3937_RS05425 0.66 -1.4
1,212,865 + DDA3937_RS05425 0.70 -0.1
1,212,865 + DDA3937_RS05425 0.70 +0.1
1,212,865 + DDA3937_RS05425 0.70 -1.7
1,212,865 + DDA3937_RS05425 0.70 -0.9
1,212,865 + DDA3937_RS05425 0.70 +0.1
1,212,865 + DDA3937_RS05425 0.70 +0.9
1,212,866 - DDA3937_RS05425 0.70 +0.5
1,212,866 - DDA3937_RS05425 0.70 -0.5
1,212,878 + DDA3937_RS05425 0.72 -0.1
1,212,878 + DDA3937_RS05425 0.72 +0.6
1,212,898 + DDA3937_RS05425 0.75 -0.1
1,212,898 + DDA3937_RS05425 0.75 +0.2
1,212,898 + DDA3937_RS05425 0.75 +0.2
1,212,898 + DDA3937_RS05425 0.75 +0.4
1,212,898 + DDA3937_RS05425 0.75 -1.7
1,212,899 - DDA3937_RS05425 0.75 -0.3
1,212,899 - DDA3937_RS05425 0.75 -0.8
1,212,899 - DDA3937_RS05425 0.75 -1.2
1,212,899 - DDA3937_RS05425 0.75 -1.5
1,212,900 + DDA3937_RS05425 0.75 +1.9
1,212,900 + DDA3937_RS05425 0.75 +0.6
1,212,900 + DDA3937_RS05425 0.75 -0.9
1,212,900 + DDA3937_RS05425 0.75 +0.4
1,212,900 + DDA3937_RS05425 0.75 -0.1
1,212,900 + DDA3937_RS05425 0.75 +0.3
1,212,900 + DDA3937_RS05425 0.75 +0.4
1,212,900 + DDA3937_RS05425 0.75 +0.0
1,212,900 + DDA3937_RS05425 0.75 -0.5
1,212,900 + DDA3937_RS05425 0.75 -0.5
1,212,900 + DDA3937_RS05425 0.75 -1.5
1,212,900 + DDA3937_RS05425 0.75 -0.3
1,212,901 - DDA3937_RS05425 0.75 +0.9
1,212,901 - DDA3937_RS05425 0.75 -0.4
1,212,901 - DDA3937_RS05425 0.75 +0.4
1,212,901 - DDA3937_RS05425 0.75 -0.8
1,212,901 - DDA3937_RS05425 0.75 -0.8
1,212,901 - DDA3937_RS05425 0.75 +0.7
1,212,901 - DDA3937_RS05425 0.75 -0.4
1,212,901 - DDA3937_RS05425 0.75 +0.4
1,212,901 - DDA3937_RS05425 0.75 +0.9
1,212,901 - DDA3937_RS05425 0.75 -0.1
1,212,901 - DDA3937_RS05425 0.75 +0.0
1,212,901 - DDA3937_RS05425 0.75 +0.2
1,212,901 - DDA3937_RS05425 0.75 +1.2
1,212,901 - DDA3937_RS05425 0.75 +0.3
1,212,902 + DDA3937_RS05425 0.76 -0.8
1,212,902 + DDA3937_RS05425 0.76 +0.2
1,212,902 + DDA3937_RS05425 0.76 +1.6
1,212,902 + DDA3937_RS05425 0.76 -2.2
1,212,902 + DDA3937_RS05425 0.76 -0.5
1,212,903 + DDA3937_RS05425 0.76 +0.6
1,212,903 - DDA3937_RS05425 0.76 +0.8
1,212,903 - DDA3937_RS05425 0.76 +0.9
1,212,903 - DDA3937_RS05425 0.76 +0.0
1,212,903 - DDA3937_RS05425 0.76 +0.3
1,212,903 - DDA3937_RS05425 0.76 -1.7
1,212,903 - DDA3937_RS05425 0.76 +0.5
1,212,903 - DDA3937_RS05425 0.76 +0.4
1,212,928 + DDA3937_RS05425 0.79 -0.3
1,212,928 + DDA3937_RS05425 0.79 +0.3
1,212,928 + DDA3937_RS05425 0.79 +0.9
1,212,929 - DDA3937_RS05425 0.79 +0.9
1,212,929 - DDA3937_RS05425 0.79 +0.3
1,212,929 - DDA3937_RS05425 0.79 -1.3
1,212,945 + DDA3937_RS05425 0.82 +0.5
1,212,945 + DDA3937_RS05425 0.82 +0.2
1,212,945 + DDA3937_RS05425 0.82 -0.4
1,212,945 + DDA3937_RS05425 0.82 +0.0
1,212,945 + DDA3937_RS05425 0.82 -0.7
1,212,974 + DDA3937_RS05425 0.86 +0.9
1,213,065 + -0.5
1,213,066 - -0.9
1,213,102 + -0.1
1,213,102 + +0.0
1,213,102 + +0.8
1,213,102 + -0.8
1,213,102 + -0.1
1,213,102 + -0.4
1,213,102 + -0.1
1,213,102 + +0.4
1,213,103 - +0.9
1,213,103 - +0.0
1,213,103 - -0.4
1,213,103 - +1.0
1,213,185 + +0.1
1,213,240 - DDA3937_RS05430 0.11 +0.1
1,213,240 - DDA3937_RS05430 0.11 -0.4
1,213,240 - +0.5
1,213,326 + DDA3937_RS05430 0.17 +0.2
1,213,336 - DDA3937_RS05430 0.18 +0.5
1,213,467 - DDA3937_RS05430 0.28 -0.5
1,213,560 + DDA3937_RS05430 0.35 -0.5
1,213,560 + DDA3937_RS05430 0.35 +0.2
1,213,560 + DDA3937_RS05430 0.35 -0.1
1,213,561 - DDA3937_RS05430 0.35 -0.7
1,213,561 - DDA3937_RS05430 0.35 -0.7
1,213,622 - DDA3937_RS05430 0.40 -0.5
1,213,641 + DDA3937_RS05430 0.41 +0.1
1,213,642 - DDA3937_RS05430 0.41 +0.3
1,213,642 - DDA3937_RS05430 0.41 +0.2
1,213,770 + DDA3937_RS05430 0.51 +0.7
1,214,076 + DDA3937_RS05430 0.74 -0.2
1,214,076 + DDA3937_RS05430 0.74 -0.6
1,214,076 + DDA3937_RS05430 0.74 -0.2
1,214,077 - DDA3937_RS05430 0.74 -0.6
1,214,077 - DDA3937_RS05430 0.74 -0.0
1,214,077 - DDA3937_RS05430 0.74 +0.1
1,214,077 - DDA3937_RS05430 0.74 +0.2
1,214,078 + DDA3937_RS05430 0.74 -1.0
1,214,078 + DDA3937_RS05430 0.74 -1.2
1,214,094 - DDA3937_RS05430 0.75 +1.5
1,214,094 - DDA3937_RS05430 0.75 -1.1
1,214,421 + -0.0
1,214,421 + +1.1
1,214,464 + +1.2
1,214,482 + +0.5
1,214,483 - +0.5
1,214,576 + +0.2
1,214,577 - +0.6
1,214,646 + DDA3937_RS05435 0.15 -0.3
1,214,661 + DDA3937_RS05435 0.16 +1.3
1,214,796 + DDA3937_RS05435 0.30 +0.3
1,215,001 - DDA3937_RS05435 0.51 +1.0
1,215,028 - DDA3937_RS05435 0.54 -0.7
1,215,028 - DDA3937_RS05435 0.54 +0.9
1,215,213 + DDA3937_RS05435 0.73 +0.9
1,215,213 + DDA3937_RS05435 0.73 +1.3
1,215,259 - DDA3937_RS05435 0.77 +1.9
1,215,259 - DDA3937_RS05435 0.77 -0.0
1,215,267 + DDA3937_RS05435 0.78 +0.6
1,215,267 + DDA3937_RS05435 0.78 +0.5
1,215,267 + DDA3937_RS05435 0.78 +0.3
1,215,268 - DDA3937_RS05435 0.78 -0.7
1,215,268 - DDA3937_RS05435 0.78 +1.3
1,215,279 + DDA3937_RS05435 0.79 -0.1
1,215,279 + DDA3937_RS05435 0.79 -0.4
1,215,279 + DDA3937_RS05435 0.79 +0.5
1,215,280 - DDA3937_RS05435 0.80 -0.8
1,215,280 - DDA3937_RS05435 0.80 -0.5
1,215,280 - DDA3937_RS05435 0.80 -0.2
1,215,287 + DDA3937_RS05435 0.80 +1.3
1,215,287 + DDA3937_RS05435 0.80 +0.6
1,215,381 + DDA3937_RS05435 0.90 +0.9

Or see this region's nucleotide sequence