Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05625

Experiment: 1.88mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05620 and DDA3937_RS05625 are separated by 54 nucleotidesDDA3937_RS05625 and DDA3937_RS05630 are separated by 326 nucleotidesDDA3937_RS05630 and DDA3937_RS05635 are separated by 351 nucleotides DDA3937_RS05620: DDA3937_RS05620 - muropeptide MFS transporter AmpG, at 1,254,801 to 1,256,270 _RS05620 DDA3937_RS05625: DDA3937_RS05625 - hypothetical protein, at 1,256,325 to 1,256,903 _RS05625 DDA3937_RS05630: DDA3937_RS05630 - transcriptional regulator BolA, at 1,257,230 to 1,257,544 _RS05630 DDA3937_RS05635: DDA3937_RS05635 - trigger factor, at 1,257,896 to 1,259,200 _RS05635 Position (kb) 1256 1257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1255.440 kb on + strand, within DDA3937_RS05620at 1255.441 kb on - strand, within DDA3937_RS05620at 1255.506 kb on - strand, within DDA3937_RS05620at 1255.535 kb on + strand, within DDA3937_RS05620at 1255.536 kb on - strand, within DDA3937_RS05620at 1255.536 kb on - strand, within DDA3937_RS05620at 1255.570 kb on + strand, within DDA3937_RS05620at 1255.709 kb on + strand, within DDA3937_RS05620at 1255.709 kb on + strand, within DDA3937_RS05620at 1255.710 kb on - strand, within DDA3937_RS05620at 1255.716 kb on + strand, within DDA3937_RS05620at 1255.741 kb on + strand, within DDA3937_RS05620at 1255.742 kb on - strand, within DDA3937_RS05620at 1255.879 kb on + strand, within DDA3937_RS05620at 1255.880 kb on - strand, within DDA3937_RS05620at 1255.880 kb on - strand, within DDA3937_RS05620at 1255.950 kb on + strand, within DDA3937_RS05620at 1255.951 kb on - strand, within DDA3937_RS05620at 1255.951 kb on - strand, within DDA3937_RS05620at 1255.951 kb on - strand, within DDA3937_RS05620at 1255.951 kb on - strand, within DDA3937_RS05620at 1256.057 kb on - strand, within DDA3937_RS05620at 1256.095 kb on + strand, within DDA3937_RS05620at 1256.096 kb on - strand, within DDA3937_RS05620at 1256.096 kb on - strand, within DDA3937_RS05620at 1256.096 kb on - strand, within DDA3937_RS05620at 1256.096 kb on - strand, within DDA3937_RS05620at 1256.096 kb on - strand, within DDA3937_RS05620at 1256.294 kb on + strandat 1256.439 kb on - strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.451 kb on + strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.452 kb on - strand, within DDA3937_RS05625at 1256.456 kb on + strand, within DDA3937_RS05625at 1256.456 kb on + strand, within DDA3937_RS05625at 1256.457 kb on - strandat 1256.457 kb on - strand, within DDA3937_RS05625at 1256.457 kb on - strand, within DDA3937_RS05625at 1256.457 kb on - strand, within DDA3937_RS05625at 1256.458 kb on + strand, within DDA3937_RS05625at 1256.458 kb on + strand, within DDA3937_RS05625at 1256.458 kb on + strand, within DDA3937_RS05625at 1256.459 kb on - strand, within DDA3937_RS05625at 1256.459 kb on - strand, within DDA3937_RS05625at 1256.459 kb on - strand, within DDA3937_RS05625at 1256.459 kb on - strand, within DDA3937_RS05625at 1256.486 kb on + strand, within DDA3937_RS05625at 1256.486 kb on + strand, within DDA3937_RS05625at 1256.486 kb on + strand, within DDA3937_RS05625at 1256.487 kb on - strand, within DDA3937_RS05625at 1256.487 kb on - strand, within DDA3937_RS05625at 1256.520 kb on - strand, within DDA3937_RS05625at 1256.543 kb on - strand, within DDA3937_RS05625at 1256.579 kb on + strand, within DDA3937_RS05625at 1256.579 kb on + strand, within DDA3937_RS05625at 1256.583 kb on - strand, within DDA3937_RS05625at 1256.583 kb on - strand, within DDA3937_RS05625at 1256.626 kb on + strand, within DDA3937_RS05625at 1256.626 kb on + strand, within DDA3937_RS05625at 1256.627 kb on - strand, within DDA3937_RS05625at 1256.627 kb on - strand, within DDA3937_RS05625at 1256.656 kb on - strand, within DDA3937_RS05625at 1256.656 kb on - strand, within DDA3937_RS05625at 1256.768 kb on + strand, within DDA3937_RS05625at 1256.768 kb on + strand, within DDA3937_RS05625at 1256.769 kb on - strand, within DDA3937_RS05625at 1256.937 kb on - strandat 1256.939 kb on + strandat 1256.940 kb on - strandat 1256.940 kb on - strandat 1256.940 kb on - strandat 1256.945 kb on + strandat 1256.945 kb on + strandat 1256.945 kb on + strandat 1256.945 kb on + strandat 1256.945 kb on + strandat 1256.946 kb on - strandat 1256.946 kb on - strandat 1256.946 kb on - strandat 1256.958 kb on + strandat 1256.958 kb on + strandat 1256.958 kb on + strandat 1256.958 kb on + strandat 1256.958 kb on + strandat 1256.958 kb on + strandat 1256.959 kb on - strandat 1256.959 kb on - strandat 1257.000 kb on - strandat 1257.005 kb on + strandat 1257.006 kb on - strandat 1257.006 kb on - strandat 1257.006 kb on - strandat 1257.101 kb on + strandat 1257.127 kb on - strandat 1257.224 kb on - strandat 1257.229 kb on + strandat 1257.230 kb on - strandat 1257.247 kb on - strandat 1257.318 kb on + strand, within DDA3937_RS05630at 1257.318 kb on + strand, within DDA3937_RS05630at 1257.318 kb on + strand, within DDA3937_RS05630at 1257.319 kb on - strand, within DDA3937_RS05630at 1257.461 kb on - strand, within DDA3937_RS05630at 1257.461 kb on - strand, within DDA3937_RS05630at 1257.461 kb on - strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.464 kb on + strand, within DDA3937_RS05630at 1257.465 kb on - strand, within DDA3937_RS05630at 1257.465 kb on - strand, within DDA3937_RS05630at 1257.465 kb on - strand, within DDA3937_RS05630at 1257.534 kb on + strandat 1257.535 kb on - strandat 1257.535 kb on - strandat 1257.553 kb on - strandat 1257.553 kb on - strandat 1257.679 kb on - strandat 1257.718 kb on + strandat 1257.719 kb on - strandat 1257.719 kb on - strandat 1257.720 kb on + strandat 1257.720 kb on + strandat 1257.720 kb on + strandat 1257.720 kb on + strandat 1257.721 kb on - strandat 1257.766 kb on + strandat 1257.766 kb on + strandat 1257.768 kb on + strandat 1257.768 kb on + strandat 1257.769 kb on - strandat 1257.843 kb on - strandat 1257.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1.88mM_PTB
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1,255,440 + DDA3937_RS05620 0.43 +0.7
1,255,441 - DDA3937_RS05620 0.44 -0.6
1,255,506 - DDA3937_RS05620 0.48 -3.3
1,255,535 + DDA3937_RS05620 0.50 -0.2
1,255,536 - DDA3937_RS05620 0.50 -0.2
1,255,536 - DDA3937_RS05620 0.50 -1.0
1,255,570 + DDA3937_RS05620 0.52 -0.2
1,255,709 + DDA3937_RS05620 0.62 -0.3
1,255,709 + DDA3937_RS05620 0.62 -0.8
1,255,710 - DDA3937_RS05620 0.62 +0.6
1,255,716 + DDA3937_RS05620 0.62 -1.2
1,255,741 + DDA3937_RS05620 0.64 +1.4
1,255,742 - DDA3937_RS05620 0.64 -1.0
1,255,879 + DDA3937_RS05620 0.73 +0.3
1,255,880 - DDA3937_RS05620 0.73 +1.3
1,255,880 - DDA3937_RS05620 0.73 -0.8
1,255,950 + DDA3937_RS05620 0.78 -0.5
1,255,951 - DDA3937_RS05620 0.78 -0.6
1,255,951 - DDA3937_RS05620 0.78 -0.0
1,255,951 - DDA3937_RS05620 0.78 -0.3
1,255,951 - DDA3937_RS05620 0.78 -0.7
1,256,057 - DDA3937_RS05620 0.85 -0.3
1,256,095 + DDA3937_RS05620 0.88 -0.3
1,256,096 - DDA3937_RS05620 0.88 +0.0
1,256,096 - DDA3937_RS05620 0.88 -0.5
1,256,096 - DDA3937_RS05620 0.88 +0.2
1,256,096 - DDA3937_RS05620 0.88 -0.1
1,256,096 - DDA3937_RS05620 0.88 +0.4
1,256,294 + +0.2
1,256,439 - DDA3937_RS05625 0.20 +0.1
1,256,451 + DDA3937_RS05625 0.22 +0.3
1,256,451 + DDA3937_RS05625 0.22 +0.8
1,256,451 + DDA3937_RS05625 0.22 +2.3
1,256,451 + DDA3937_RS05625 0.22 -0.2
1,256,451 + DDA3937_RS05625 0.22 -0.1
1,256,451 + DDA3937_RS05625 0.22 -1.3
1,256,451 + DDA3937_RS05625 0.22 +1.3
1,256,451 + DDA3937_RS05625 0.22 +0.7
1,256,452 - DDA3937_RS05625 0.22 -0.0
1,256,452 - DDA3937_RS05625 0.22 +1.3
1,256,452 - DDA3937_RS05625 0.22 -1.3
1,256,452 - DDA3937_RS05625 0.22 +1.0
1,256,452 - DDA3937_RS05625 0.22 -0.3
1,256,452 - DDA3937_RS05625 0.22 +0.3
1,256,452 - DDA3937_RS05625 0.22 -0.0
1,256,452 - DDA3937_RS05625 0.22 -0.2
1,256,452 - DDA3937_RS05625 0.22 +0.3
1,256,452 - DDA3937_RS05625 0.22 -0.1
1,256,452 - DDA3937_RS05625 0.22 +1.0
1,256,456 + DDA3937_RS05625 0.23 -0.3
1,256,456 + DDA3937_RS05625 0.23 +0.7
1,256,457 - +2.6
1,256,457 - DDA3937_RS05625 0.23 -0.1
1,256,457 - DDA3937_RS05625 0.23 -1.0
1,256,457 - DDA3937_RS05625 0.23 +0.5
1,256,458 + DDA3937_RS05625 0.23 -0.7
1,256,458 + DDA3937_RS05625 0.23 +0.6
1,256,458 + DDA3937_RS05625 0.23 -1.5
1,256,459 - DDA3937_RS05625 0.23 +2.4
1,256,459 - DDA3937_RS05625 0.23 -0.0
1,256,459 - DDA3937_RS05625 0.23 +0.4
1,256,459 - DDA3937_RS05625 0.23 +0.4
1,256,486 + DDA3937_RS05625 0.28 -0.5
1,256,486 + DDA3937_RS05625 0.28 -0.6
1,256,486 + DDA3937_RS05625 0.28 +0.6
1,256,487 - DDA3937_RS05625 0.28 +0.3
1,256,487 - DDA3937_RS05625 0.28 -0.3
1,256,520 - DDA3937_RS05625 0.34 +0.1
1,256,543 - DDA3937_RS05625 0.38 +3.3
1,256,579 + DDA3937_RS05625 0.44 +0.4
1,256,579 + DDA3937_RS05625 0.44 +0.3
1,256,583 - DDA3937_RS05625 0.45 -0.6
1,256,583 - DDA3937_RS05625 0.45 -0.8
1,256,626 + DDA3937_RS05625 0.52 -1.8
1,256,626 + DDA3937_RS05625 0.52 +1.6
1,256,627 - DDA3937_RS05625 0.52 +0.5
1,256,627 - DDA3937_RS05625 0.52 -0.4
1,256,656 - DDA3937_RS05625 0.57 +0.0
1,256,656 - DDA3937_RS05625 0.57 -0.7
1,256,768 + DDA3937_RS05625 0.77 -0.5
1,256,768 + DDA3937_RS05625 0.77 -1.1
1,256,769 - DDA3937_RS05625 0.77 -0.3
1,256,937 - -1.9
1,256,939 + -0.2
1,256,940 - +0.3
1,256,940 - +0.8
1,256,940 - -0.6
1,256,945 + +0.0
1,256,945 + -0.9
1,256,945 + -0.3
1,256,945 + +0.2
1,256,945 + -1.7
1,256,946 - -0.3
1,256,946 - +0.1
1,256,946 - +0.3
1,256,958 + -0.6
1,256,958 + +0.5
1,256,958 + +0.2
1,256,958 + -0.0
1,256,958 + -0.2
1,256,958 + -0.3
1,256,959 - +0.8
1,256,959 - -0.9
1,257,000 - -1.0
1,257,005 + +1.0
1,257,006 - +0.3
1,257,006 - -0.1
1,257,006 - +0.7
1,257,101 + -0.6
1,257,127 - -1.0
1,257,224 - +0.4
1,257,229 + +1.2
1,257,230 - -0.5
1,257,247 - -1.0
1,257,318 + DDA3937_RS05630 0.28 -0.0
1,257,318 + DDA3937_RS05630 0.28 +0.1
1,257,318 + DDA3937_RS05630 0.28 -0.0
1,257,319 - DDA3937_RS05630 0.28 +0.4
1,257,461 - DDA3937_RS05630 0.73 -0.7
1,257,461 - DDA3937_RS05630 0.73 +0.4
1,257,461 - DDA3937_RS05630 0.73 +1.8
1,257,464 + DDA3937_RS05630 0.74 -0.6
1,257,464 + DDA3937_RS05630 0.74 -0.4
1,257,464 + DDA3937_RS05630 0.74 +0.7
1,257,464 + DDA3937_RS05630 0.74 -1.2
1,257,464 + DDA3937_RS05630 0.74 -0.6
1,257,464 + DDA3937_RS05630 0.74 +0.3
1,257,465 - DDA3937_RS05630 0.75 -0.4
1,257,465 - DDA3937_RS05630 0.75 -0.8
1,257,465 - DDA3937_RS05630 0.75 -0.3
1,257,534 + -0.8
1,257,535 - -0.4
1,257,535 - -0.6
1,257,553 - +0.6
1,257,553 - -0.0
1,257,679 - -1.8
1,257,718 + +0.3
1,257,719 - -1.3
1,257,719 - -1.2
1,257,720 + -1.8
1,257,720 + -0.4
1,257,720 + -0.6
1,257,720 + +1.0
1,257,721 - -1.0
1,257,766 + -0.5
1,257,766 + -0.2
1,257,768 + +0.3
1,257,768 + -0.6
1,257,769 - -0.0
1,257,843 - -0.0
1,257,843 - -0.3

Or see this region's nucleotide sequence