Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21445 and DDA3937_RS21450 are separated by 262 nucleotides DDA3937_RS21450 and DDA3937_RS21455 are separated by 13 nucleotides DDA3937_RS21455 and DDA3937_RS21460 are separated by 111 nucleotides
DDA3937_RS21445: DDA3937_RS21445 - ABC transporter substrate-binding protein, at 4,882,695 to 4,883,531
_RS21445
DDA3937_RS21450: DDA3937_RS21450 - phosphate signaling complex protein PhoU, at 4,883,794 to 4,884,525
_RS21450
DDA3937_RS21455: DDA3937_RS21455 - phosphate ABC transporter ATP-binding protein PstB, at 4,884,539 to 4,885,315
_RS21455
DDA3937_RS21460: DDA3937_RS21460 - phosphate ABC transporter permease PstA, at 4,885,427 to 4,886,314
_RS21460
Position (kb) 4883
4884
4885 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4882.882 kb on + strand, within DDA3937_RS21445 at 4882.883 kb on - strand, within DDA3937_RS21445 at 4883.277 kb on - strand, within DDA3937_RS21445 at 4883.307 kb on + strand, within DDA3937_RS21445 at 4883.307 kb on + strand, within DDA3937_RS21445 at 4883.307 kb on + strand, within DDA3937_RS21445 at 4883.308 kb on - strand, within DDA3937_RS21445 at 4883.356 kb on + strand, within DDA3937_RS21445 at 4883.535 kb on + strand at 4883.546 kb on + strand at 4883.629 kb on + strand at 4883.635 kb on - strand at 4883.635 kb on - strand at 4883.644 kb on + strand at 4883.644 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.647 kb on + strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.648 kb on - strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.655 kb on + strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.656 kb on - strand at 4883.660 kb on + strand at 4883.660 kb on + strand at 4883.660 kb on + strand at 4883.660 kb on + strand at 4883.660 kb on + strand at 4883.660 kb on + strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.661 kb on - strand at 4883.784 kb on + strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.785 kb on - strand at 4883.795 kb on + strand at 4883.796 kb on - strand at 4884.529 kb on - strand at 4884.529 kb on - strand at 4884.529 kb on - strand at 4884.529 kb on - strand at 4884.529 kb on - strand at 4884.529 kb on - strand at 4884.536 kb on + strand at 4884.561 kb on + strand at 4884.561 kb on + strand at 4884.561 kb on + strand at 4884.562 kb on - strand at 4884.562 kb on - strand at 4884.562 kb on - strand at 4884.562 kb on - strand at 4884.562 kb on - strand at 4884.562 kb on - strand at 4884.637 kb on - strand, within DDA3937_RS21455 at 4884.637 kb on - strand, within DDA3937_RS21455 at 4884.637 kb on - strand, within DDA3937_RS21455 at 4884.637 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.641 kb on - strand, within DDA3937_RS21455 at 4884.650 kb on - strand, within DDA3937_RS21455 at 4884.683 kb on - strand, within DDA3937_RS21455 at 4884.683 kb on - strand, within DDA3937_RS21455 at 4884.703 kb on + strand, within DDA3937_RS21455 at 4884.703 kb on + strand, within DDA3937_RS21455 at 4884.703 kb on + strand, within DDA3937_RS21455 at 4884.703 kb on + strand, within DDA3937_RS21455 at 4884.704 kb on - strand, within DDA3937_RS21455 at 4884.704 kb on - strand, within DDA3937_RS21455 at 4884.704 kb on - strand, within DDA3937_RS21455 at 4884.705 kb on + strand at 4884.705 kb on + strand, within DDA3937_RS21455 at 4884.705 kb on + strand, within DDA3937_RS21455 at 4884.706 kb on - strand, within DDA3937_RS21455 at 4884.706 kb on - strand, within DDA3937_RS21455 at 4884.706 kb on - strand, within DDA3937_RS21455 at 4884.962 kb on + strand, within DDA3937_RS21455 at 4884.962 kb on + strand, within DDA3937_RS21455 at 4884.962 kb on + strand, within DDA3937_RS21455 at 4884.962 kb on + strand, within DDA3937_RS21455 at 4884.983 kb on - strand, within DDA3937_RS21455 at 4884.983 kb on - strand, within DDA3937_RS21455 at 4884.990 kb on + strand, within DDA3937_RS21455 at 4884.991 kb on - strand, within DDA3937_RS21455 at 4885.034 kb on + strand, within DDA3937_RS21455 at 4885.034 kb on + strand, within DDA3937_RS21455 at 4885.035 kb on - strand, within DDA3937_RS21455 at 4885.078 kb on + strand, within DDA3937_RS21455 at 4885.079 kb on - strand, within DDA3937_RS21455 at 4885.135 kb on - strand, within DDA3937_RS21455 at 4885.211 kb on - strand, within DDA3937_RS21455 at 4885.211 kb on - strand, within DDA3937_RS21455 at 4885.257 kb on + strand at 4885.258 kb on - strand at 4885.309 kb on + strand at 4885.310 kb on - strand at 4885.310 kb on - strand at 4885.310 kb on - strand at 4885.310 kb on - strand at 4885.362 kb on - strand at 4885.369 kb on - strand at 4885.371 kb on + strand at 4885.372 kb on - strand at 4885.372 kb on - strand at 4885.382 kb on + strand at 4885.382 kb on + strand at 4885.383 kb on - strand at 4885.383 kb on - strand at 4885.383 kb on - strand at 4885.405 kb on + strand at 4885.420 kb on + strand at 4885.420 kb on + strand at 4885.421 kb on - strand at 4885.428 kb on + strand at 4885.428 kb on + strand at 4885.428 kb on + strand at 4885.428 kb on + strand at 4885.429 kb on - strand at 4885.429 kb on - strand at 4885.465 kb on + strand at 4885.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 4,882,882 + DDA3937_RS21445 0.22 -0.3 4,882,883 - DDA3937_RS21445 0.22 -0.6 4,883,277 - DDA3937_RS21445 0.70 +0.1 4,883,307 + DDA3937_RS21445 0.73 -0.1 4,883,307 + DDA3937_RS21445 0.73 +1.0 4,883,307 + DDA3937_RS21445 0.73 +1.1 4,883,308 - DDA3937_RS21445 0.73 +0.8 4,883,356 + DDA3937_RS21445 0.79 +0.3 4,883,535 + -0.5 4,883,546 + -0.2 4,883,629 + +1.1 4,883,635 - +0.7 4,883,635 - -0.3 4,883,644 + +0.2 4,883,644 + -0.8 4,883,647 + -0.3 4,883,647 + +0.2 4,883,647 + -0.2 4,883,647 + +0.4 4,883,647 + +0.7 4,883,647 + -0.9 4,883,647 + -0.4 4,883,648 - -1.9 4,883,648 - +0.7 4,883,648 - -0.3 4,883,648 - -0.6 4,883,648 - +0.2 4,883,648 - +1.1 4,883,648 - +0.3 4,883,655 + +0.8 4,883,655 + +0.5 4,883,655 + +1.1 4,883,655 + -1.4 4,883,655 + -0.1 4,883,655 + +0.2 4,883,655 + -0.5 4,883,656 - +0.4 4,883,656 - -0.5 4,883,656 - -2.3 4,883,656 - -0.0 4,883,656 - -0.1 4,883,656 - -0.6 4,883,656 - +0.0 4,883,656 - -0.1 4,883,660 + +1.8 4,883,660 + +0.4 4,883,660 + -0.4 4,883,660 + -1.6 4,883,660 + -0.5 4,883,660 + -0.3 4,883,661 - +1.1 4,883,661 - -1.5 4,883,661 - -0.5 4,883,661 - +0.1 4,883,661 - -0.3 4,883,661 - +1.0 4,883,661 - -0.0 4,883,784 + -0.2 4,883,785 - +0.3 4,883,785 - -0.6 4,883,785 - +0.2 4,883,785 - +1.0 4,883,785 - +0.1 4,883,785 - -0.9 4,883,785 - +1.0 4,883,795 + +0.7 4,883,796 - -0.9 4,884,529 - -0.4 4,884,529 - -0.8 4,884,529 - +0.4 4,884,529 - +0.2 4,884,529 - -0.4 4,884,529 - -0.2 4,884,536 + +1.8 4,884,561 + -0.1 4,884,561 + +0.1 4,884,561 + +0.2 4,884,562 - +0.2 4,884,562 - -0.2 4,884,562 - +0.4 4,884,562 - +0.1 4,884,562 - -2.1 4,884,562 - -0.1 4,884,637 - DDA3937_RS21455 0.13 -0.0 4,884,637 - DDA3937_RS21455 0.13 +0.2 4,884,637 - DDA3937_RS21455 0.13 -0.3 4,884,637 - DDA3937_RS21455 0.13 -0.6 4,884,641 - DDA3937_RS21455 0.13 +0.8 4,884,641 - DDA3937_RS21455 0.13 -0.6 4,884,641 - DDA3937_RS21455 0.13 -0.3 4,884,641 - DDA3937_RS21455 0.13 -1.4 4,884,641 - DDA3937_RS21455 0.13 +0.3 4,884,641 - DDA3937_RS21455 0.13 +0.5 4,884,650 - DDA3937_RS21455 0.14 -0.3 4,884,683 - DDA3937_RS21455 0.19 +0.2 4,884,683 - DDA3937_RS21455 0.19 -1.0 4,884,703 + DDA3937_RS21455 0.21 +1.4 4,884,703 + DDA3937_RS21455 0.21 +1.8 4,884,703 + DDA3937_RS21455 0.21 +0.4 4,884,703 + DDA3937_RS21455 0.21 +0.4 4,884,704 - DDA3937_RS21455 0.21 +0.3 4,884,704 - DDA3937_RS21455 0.21 +0.5 4,884,704 - DDA3937_RS21455 0.21 -0.1 4,884,705 + +0.8 4,884,705 + DDA3937_RS21455 0.21 +0.7 4,884,705 + DDA3937_RS21455 0.21 -0.6 4,884,706 - DDA3937_RS21455 0.21 +0.1 4,884,706 - DDA3937_RS21455 0.21 +0.3 4,884,706 - DDA3937_RS21455 0.21 +0.5 4,884,962 + DDA3937_RS21455 0.54 -0.6 4,884,962 + DDA3937_RS21455 0.54 -0.2 4,884,962 + DDA3937_RS21455 0.54 -0.6 4,884,962 + DDA3937_RS21455 0.54 -0.2 4,884,983 - DDA3937_RS21455 0.57 +1.1 4,884,983 - DDA3937_RS21455 0.57 -0.1 4,884,990 + DDA3937_RS21455 0.58 +0.1 4,884,991 - DDA3937_RS21455 0.58 -0.1 4,885,034 + DDA3937_RS21455 0.64 -0.1 4,885,034 + DDA3937_RS21455 0.64 +0.1 4,885,035 - DDA3937_RS21455 0.64 +0.7 4,885,078 + DDA3937_RS21455 0.69 -0.2 4,885,079 - DDA3937_RS21455 0.69 -1.9 4,885,135 - DDA3937_RS21455 0.77 +0.6 4,885,211 - DDA3937_RS21455 0.86 -0.4 4,885,211 - DDA3937_RS21455 0.86 -0.5 4,885,257 + +0.4 4,885,258 - -0.7 4,885,309 + +1.4 4,885,310 - -1.4 4,885,310 - -1.2 4,885,310 - -0.2 4,885,310 - -1.0 4,885,362 - +0.1 4,885,369 - -1.4 4,885,371 + -0.2 4,885,372 - -0.1 4,885,372 - -0.2 4,885,382 + +1.4 4,885,382 + -0.2 4,885,383 - -0.3 4,885,383 - -0.9 4,885,383 - -1.9 4,885,405 + -0.5 4,885,420 + +0.1 4,885,420 + -0.2 4,885,421 - +0.5 4,885,428 + -0.4 4,885,428 + +2.4 4,885,428 + -0.5 4,885,428 + +0.4 4,885,429 - -0.4 4,885,429 - +0.5 4,885,465 + -0.7 4,885,466 - +1.1
Or see this region's nucleotide sequence