Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13600

Experiment: 1.88mM_PTB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1.88mM_PTB
3,096,374	+		DDA3937_RS13595	0.48	+0.0
3,096,374	+		DDA3937_RS13595	0.48	-0.0
3,096,374	+		DDA3937_RS13595	0.48	-0.1
3,096,374	+		DDA3937_RS13595	0.48	-0.1
3,096,374	+		DDA3937_RS13595	0.48	-0.7
3,096,374	+		DDA3937_RS13595	0.48	+0.4
3,096,374	+		DDA3937_RS13595	0.48	+0.0
3,096,374	+		DDA3937_RS13595	0.48	+0.9
3,096,374	+		DDA3937_RS13595	0.48	+0.0
3,096,374	+		DDA3937_RS13595	0.48	-0.7
3,096,375	-		DDA3937_RS13595	0.48	-0.0
3,096,375	-		DDA3937_RS13595	0.48	-0.6
3,096,375	-		DDA3937_RS13595	0.48	+0.0
3,096,375	-		DDA3937_RS13595	0.48	-0.2
3,096,375	-		DDA3937_RS13595	0.48	-1.1
3,096,375	-		DDA3937_RS13595	0.48	-0.5
3,096,375	-		DDA3937_RS13595	0.48	-0.1
3,096,416	+		DDA3937_RS13595	0.51	-0.2
3,096,416	+		DDA3937_RS13595	0.51	+0.3
3,096,416	+		DDA3937_RS13595	0.51	-0.2
3,096,417	-		DDA3937_RS13595	0.51	-0.4
3,096,420	+		DDA3937_RS13595	0.51	-1.4
3,096,420	+		DDA3937_RS13595	0.51	-1.0
3,096,421	-		DDA3937_RS13595	0.51	+1.3
3,096,436	+		DDA3937_RS13595	0.52	-0.7
3,096,437	-		DDA3937_RS13595	0.52	-1.1
3,096,467	-		DDA3937_RS13595	0.54	-1.1
3,096,645	+		DDA3937_RS13595	0.67	-0.2
3,096,709	+		DDA3937_RS13595	0.71	+0.4
3,096,709	+		DDA3937_RS13595	0.71	+0.3
3,096,709	+		DDA3937_RS13595	0.71	-0.4
3,096,710	-		DDA3937_RS13595	0.71	-0.0
3,096,710	-		DDA3937_RS13595	0.71	-0.2
3,096,710	-		DDA3937_RS13595	0.71	+0.1
3,096,710	-		DDA3937_RS13595	0.71	+0.3
3,096,710	-		DDA3937_RS13595	0.71	-0.4
3,096,711	+		DDA3937_RS13595	0.71	+0.8
3,096,711	+		DDA3937_RS13595	0.71	+0.3
3,096,711	+		DDA3937_RS13595	0.71	+0.9
3,096,711	+		DDA3937_RS13595	0.71	+0.6
3,096,712	-		DDA3937_RS13595	0.71	+0.4
3,096,712	-		DDA3937_RS13595	0.71	+0.5
3,096,765	+		DDA3937_RS13595	0.75	+0.3
3,096,790	+		DDA3937_RS13595	0.77	-1.6
3,096,790	+		DDA3937_RS13595	0.77	-2.2
3,096,791	-		DDA3937_RS13595	0.77	-1.1
3,096,791	-				+0.2
3,096,823	-		DDA3937_RS13595	0.79	+0.5
3,096,916	+		DDA3937_RS13595	0.86	-0.2
3,096,916	+		DDA3937_RS13595	0.86	-0.2
3,096,916	+		DDA3937_RS13595	0.86	-1.2
3,096,916	+		DDA3937_RS13595	0.86	-2.4
3,096,916	+		DDA3937_RS13595	0.86	-0.5
3,096,916	+		DDA3937_RS13595	0.86	+0.2
3,096,916	+		DDA3937_RS13595	0.86	-0.4
3,096,916	+		DDA3937_RS13595	0.86	-0.2
3,096,916	+		DDA3937_RS13595	0.86	-0.5
3,096,917	-		DDA3937_RS13595	0.86	-0.2
3,096,917	-		DDA3937_RS13595	0.86	-0.1
3,096,917	-		DDA3937_RS13595	0.86	-1.0
3,096,917	-		DDA3937_RS13595	0.86	+0.3
3,096,917	-		DDA3937_RS13595	0.86	-1.2
3,096,917	-		DDA3937_RS13595	0.86	-1.1
3,096,917	-		DDA3937_RS13595	0.86	+0.7
3,096,917	-				-1.8
3,096,917	-		DDA3937_RS13595	0.86	+0.5
3,096,917	-		DDA3937_RS13595	0.86	+0.9
3,096,917	-		DDA3937_RS13595	0.86	-0.4
3,096,917	-		DDA3937_RS13595	0.86	-0.8
3,096,917	-		DDA3937_RS13595	0.86	-0.6
3,096,918	+		DDA3937_RS13595	0.86	+0.3
3,096,918	+		DDA3937_RS13595	0.86	+0.3
3,096,918	+		DDA3937_RS13595	0.86	+1.3
3,096,919	-		DDA3937_RS13595	0.86	+0.2
3,096,919	-		DDA3937_RS13595	0.86	-0.4
3,096,919	-		DDA3937_RS13595	0.86	-0.3
3,096,919	-		DDA3937_RS13595	0.86	+0.0
3,096,919	-		DDA3937_RS13595	0.86	-0.1
3,096,919	-		DDA3937_RS13595	0.86	-0.2
3,096,919	-		DDA3937_RS13595	0.86	+0.2
3,096,921	+		DDA3937_RS13595	0.86	-0.6
3,096,921	+				+0.2
3,096,921	+		DDA3937_RS13595	0.86	-1.1
3,096,921	+				-0.6
3,096,921	+		DDA3937_RS13595	0.86	-0.8
3,096,921	+		DDA3937_RS13595	0.86	-0.0
3,096,921	+		DDA3937_RS13595	0.86	-0.3
3,096,921	+		DDA3937_RS13595	0.86	+0.1
3,096,921	+		DDA3937_RS13595	0.86	+0.1
3,096,922	-		DDA3937_RS13595	0.86	-2.4
3,096,922	-		DDA3937_RS13595	0.86	-0.6
3,096,922	-		DDA3937_RS13595	0.86	-0.8
3,096,922	-		DDA3937_RS13595	0.86	-1.4
3,096,922	-		DDA3937_RS13595	0.86	-0.3
3,096,922	-		DDA3937_RS13595	0.86	-0.1
3,096,922	-		DDA3937_RS13595	0.86	+1.5
3,096,922	-		DDA3937_RS13595	0.86	-0.2
3,096,922	-		DDA3937_RS13595	0.86	+0.0
3,096,922	-		DDA3937_RS13595	0.86	-0.4
3,096,922	-		DDA3937_RS13595	0.86	+0.2
3,096,922	-		DDA3937_RS13595	0.86	+0.3
3,096,942	+		DDA3937_RS13595	0.87	-1.0
3,096,942	+		DDA3937_RS13595	0.87	+0.8
3,096,942	+		DDA3937_RS13595	0.87	-0.4
3,096,942	+		DDA3937_RS13595	0.87	-0.4
3,096,943	-		DDA3937_RS13595	0.87	-0.5
3,096,971	-		DDA3937_RS13595	0.89	+0.6
3,096,972	+		DDA3937_RS13595	0.89	-0.6
3,096,972	+		DDA3937_RS13595	0.89	+0.5
3,096,972	+		DDA3937_RS13595	0.89	+2.3
3,096,972	+		DDA3937_RS13595	0.89	+0.5
3,096,973	-		DDA3937_RS13595	0.90	-0.7
3,096,973	-		DDA3937_RS13595	0.90	+0.7
3,096,973	-		DDA3937_RS13595	0.90	-1.8
3,096,973	-		DDA3937_RS13595	0.90	-0.6
3,096,978	-		DDA3937_RS13595	0.90	-0.1
3,097,085	+				-0.2
3,097,086	-				-1.0
3,097,094	-				-1.6
3,097,094	-				-0.0
3,097,096	-				+1.0
3,097,121	-				-0.7
3,097,146	+				-0.2
3,097,146	+				-0.1
3,097,147	-				+0.2
3,097,147	-				+0.4
3,097,147	-				+0.1
3,097,151	-				-1.6
3,097,151	-				-0.4
3,097,183	-				+0.8
3,097,287	+				-1.7
3,097,287	+				-0.2
3,097,288	-				+0.4
3,097,288	-				-0.8
3,097,315	-				-0.3
3,097,323	+				+1.8
3,097,324	-				-0.2
3,097,325	+				+0.4
3,097,347	+				+1.0
3,097,347	+				+0.4
3,097,348	-				+0.3
3,097,348	-				-0.2
3,097,348	-				-1.2
3,097,376	+				+0.3
3,097,376	+				-0.2
3,097,376	+				-0.8
3,097,376	+				-0.1
3,097,376	+				-0.0
3,097,377	-				+0.9
3,097,377	-				-0.7
3,097,377	-				-0.3
3,097,407	-		DDA3937_RS13600	0.12	+0.9
3,097,407	-		DDA3937_RS13600	0.12	+0.3
3,097,411	+		DDA3937_RS13600	0.13	+0.8
3,097,473	+		DDA3937_RS13600	0.29	-0.1
3,097,474	-		DDA3937_RS13600	0.30	+0.8
3,097,474	-		DDA3937_RS13600	0.30	-0.5
3,097,523	-		DDA3937_RS13600	0.43	-1.1
3,097,523	-		DDA3937_RS13600	0.43	+0.1
3,097,526	-		DDA3937_RS13600	0.43	-0.8
3,097,583	+		DDA3937_RS13600	0.58	-0.2
3,097,587	-		DDA3937_RS13600	0.60	+0.5
3,097,587	-		DDA3937_RS13600	0.60	+0.8
3,097,716	+				-0.1
3,097,768	-				+0.0
3,097,768	-				-1.5
3,097,768	-				+0.8
3,097,768	-				+2.2
3,097,771	-				-0.4
3,097,771	-				+1.0
3,097,813	+				-0.2
3,097,846	+				-0.2
3,097,847	-				-0.1
3,097,849	-				+1.2
3,097,876	+				-0.0
3,097,879	+				-0.1
3,097,880	-				-1.0
3,097,982	+				-0.5
3,097,983	-				-0.7
3,098,012	+				-0.0
3,098,019	+				+0.0
3,098,020	-				-1.8
3,098,043	-				-1.8
3,098,050	+				-1.0
3,098,098	-				-0.1
3,098,114	-				-1.4
3,098,145	+				+0.1
3,098,145	+				-0.7
3,098,146	-				+2.8
3,098,159	-				-1.6
3,098,301	+		DDA3937_RS13605	0.12	-2.0
3,098,351	+		DDA3937_RS13605	0.16	-0.7
3,098,352	-		DDA3937_RS13605	0.16	-0.4
3,098,352	-		DDA3937_RS13605	0.16	-0.7
3,098,361	+		DDA3937_RS13605	0.17	+0.4
3,098,361	+		DDA3937_RS13605	0.17	-1.5
3,098,364	+		DDA3937_RS13605	0.17	+0.3
3,098,364	+		DDA3937_RS13605	0.17	+0.5
3,098,365	-		DDA3937_RS13605	0.17	-0.4
3,098,365	-		DDA3937_RS13605	0.17	+0.0
3,098,389	+		DDA3937_RS13605	0.19	-0.4
3,098,476	+		DDA3937_RS13605	0.26	+0.2
3,098,477	-		DDA3937_RS13605	0.26	-0.4
3,098,544	+		DDA3937_RS13605	0.31	+0.2
3,098,544	+		DDA3937_RS13605	0.31	+0.3
3,098,544	+		DDA3937_RS13605	0.31	-0.4
3,098,544	+		DDA3937_RS13605	0.31	+1.0
3,098,544	+		DDA3937_RS13605	0.31	-0.2
3,098,545	-		DDA3937_RS13605	0.31	+0.5
3,098,545	-		DDA3937_RS13605	0.31	-0.2
3,098,545	-		DDA3937_RS13605	0.31	-0.4
3,098,545	-		DDA3937_RS13605	0.31	+0.4
3,098,545	-		DDA3937_RS13605	0.31	-0.6
3,098,548	+		DDA3937_RS13605	0.31	-0.2
3,098,548	+		DDA3937_RS13605	0.31	-0.2
3,098,548	+		DDA3937_RS13605	0.31	-0.9
3,098,548	+		DDA3937_RS13605	0.31	-2.0
3,098,549	-		DDA3937_RS13605	0.31	+1.3
3,098,549	-		DDA3937_RS13605	0.31	+0.0
3,098,549	-		DDA3937_RS13605	0.31	-0.5
3,098,632	+		DDA3937_RS13605	0.38	+2.8
3,098,665	+		DDA3937_RS13605	0.41	-0.2
3,098,665	+		DDA3937_RS13605	0.41	-1.7
3,098,697	+		DDA3937_RS13605	0.43	-0.7
3,098,698	-		DDA3937_RS13605	0.43	-2.0
3,098,703	+		DDA3937_RS13605	0.43	+0.8
3,098,704	-		DDA3937_RS13605	0.44	+0.2
3,098,704	-		DDA3937_RS13605	0.44	+0.0
3,098,711	-		DDA3937_RS13605	0.44	-1.6