Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotides DDA3937_RS03845 and DDA3937_RS03850 are separated by 220 nucleotides
DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069
_RS03840
DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034
_RS03845
DDA3937_RS03850: DDA3937_RS03850 - NACHT domain-containing protein, at 853,255 to 858,222
_RS03850
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.362 kb on - strand, within DDA3937_RS03840 at 851.694 kb on - strand, within DDA3937_RS03840 at 852.060 kb on + strand at 852.063 kb on + strand at 852.071 kb on + strand at 852.071 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.119 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.128 kb on - strand at 852.130 kb on + strand at 852.231 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.238 kb on - strand at 852.245 kb on + strand at 852.245 kb on + strand at 852.246 kb on - strand at 852.258 kb on - strand at 852.259 kb on + strand at 852.259 kb on + strand at 852.260 kb on - strand at 852.281 kb on - strand at 852.285 kb on + strand at 852.286 kb on - strand at 852.308 kb on - strand at 852.321 kb on + strand at 852.402 kb on + strand at 852.402 kb on + strand at 852.403 kb on - strand at 852.403 kb on - strand at 852.427 kb on + strand, within DDA3937_RS03845 at 852.452 kb on + strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.522 kb on + strand, within DDA3937_RS03845 at 852.538 kb on - strand, within DDA3937_RS03845 at 852.590 kb on + strand, within DDA3937_RS03845 at 852.591 kb on - strand, within DDA3937_RS03845 at 852.622 kb on + strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.640 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.705 kb on + strand, within DDA3937_RS03845 at 852.774 kb on - strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.838 kb on - strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 853.004 kb on + strand at 853.005 kb on - strand at 853.163 kb on - strand at 853.333 kb on - strand at 853.379 kb on + strand at 853.380 kb on - strand at 853.389 kb on + strand at 853.389 kb on + strand at 853.479 kb on - strand at 853.494 kb on - strand at 853.590 kb on + strand at 853.890 kb on - strand, within DDA3937_RS03850 at 853.942 kb on - strand, within DDA3937_RS03850 at 853.952 kb on - strand, within DDA3937_RS03850 at 853.961 kb on + strand, within DDA3937_RS03850 at 854.018 kb on + strand, within DDA3937_RS03850 at 854.019 kb on - strand, within DDA3937_RS03850 at 854.028 kb on + strand, within DDA3937_RS03850 at 854.029 kb on - strand, within DDA3937_RS03850
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 851,362 - DDA3937_RS03840 0.36 +1.5 851,694 - DDA3937_RS03840 0.66 -0.2 852,060 + +0.7 852,063 + +0.7 852,071 + +0.9 852,071 + +1.8 852,080 + -0.1 852,080 + -0.2 852,080 + +0.2 852,119 + +0.8 852,127 + -0.1 852,127 + +0.2 852,127 + -0.1 852,128 - -0.1 852,130 + +0.5 852,231 + +1.8 852,237 + -1.0 852,237 + -1.0 852,237 + +0.5 852,238 - +2.1 852,245 + +0.5 852,245 + -0.5 852,246 - -0.9 852,258 - +0.3 852,259 + +0.4 852,259 + +0.4 852,260 - -0.1 852,281 - +0.8 852,285 + +0.1 852,286 - +0.4 852,308 - +0.1 852,321 + -0.4 852,402 + -0.4 852,402 + -1.2 852,403 - -0.2 852,403 - -0.7 852,427 + DDA3937_RS03845 0.11 -0.2 852,452 + DDA3937_RS03845 0.15 -0.7 852,453 - DDA3937_RS03845 0.15 -0.5 852,453 - DDA3937_RS03845 0.15 +0.6 852,453 - DDA3937_RS03845 0.15 +0.5 852,500 - DDA3937_RS03845 0.22 -2.2 852,500 - DDA3937_RS03845 0.22 +1.7 852,522 + DDA3937_RS03845 0.25 -0.9 852,538 - DDA3937_RS03845 0.27 -0.7 852,590 + DDA3937_RS03845 0.35 -0.4 852,591 - DDA3937_RS03845 0.35 -0.9 852,622 + DDA3937_RS03845 0.40 +0.0 852,623 - DDA3937_RS03845 0.40 -1.1 852,623 - DDA3937_RS03845 0.40 +0.1 852,623 - DDA3937_RS03845 0.40 +0.1 852,623 - DDA3937_RS03845 0.40 -1.1 852,640 + DDA3937_RS03845 0.42 +0.2 852,672 + DDA3937_RS03845 0.47 +1.7 852,672 + DDA3937_RS03845 0.47 +0.6 852,672 + DDA3937_RS03845 0.47 -0.2 852,705 + DDA3937_RS03845 0.52 -0.7 852,774 - DDA3937_RS03845 0.62 +1.1 852,837 + DDA3937_RS03845 0.71 +0.2 852,837 + DDA3937_RS03845 0.71 -1.6 852,837 + DDA3937_RS03845 0.71 -0.8 852,838 - DDA3937_RS03845 0.71 -0.9 852,912 + DDA3937_RS03845 0.82 -0.5 852,912 + DDA3937_RS03845 0.82 +0.4 852,913 - DDA3937_RS03845 0.82 -2.2 852,913 - DDA3937_RS03845 0.82 -0.9 852,941 + DDA3937_RS03845 0.86 -0.3 852,941 + DDA3937_RS03845 0.86 -2.1 852,941 + DDA3937_RS03845 0.86 +0.4 853,004 + -0.2 853,005 - +0.5 853,163 - +0.4 853,333 - -0.9 853,379 + -0.6 853,380 - +0.3 853,389 + -0.3 853,389 + -0.7 853,479 - +1.7 853,494 - -0.7 853,590 + -0.6 853,890 - DDA3937_RS03850 0.13 +1.1 853,942 - DDA3937_RS03850 0.14 +0.1 853,952 - DDA3937_RS03850 0.14 -0.1 853,961 + DDA3937_RS03850 0.14 -0.9 854,018 + DDA3937_RS03850 0.15 +0.1 854,019 - DDA3937_RS03850 0.15 -0.8 854,028 + DDA3937_RS03850 0.16 +0.1 854,029 - DDA3937_RS03850 0.16 -0.1
Or see this region's nucleotide sequence