Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02540 and DDA3937_RS02545 are separated by 529 nucleotides DDA3937_RS02545 and DDA3937_RS02550 are separated by 0 nucleotides DDA3937_RS02550 and DDA3937_RS02555 are separated by 16 nucleotides
DDA3937_RS02540: DDA3937_RS02540 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 560,947 to 561,447
_RS02540
DDA3937_RS02545: DDA3937_RS02545 - heavy metal translocating P-type ATPase, at 561,977 to 564,415
_RS02545
DDA3937_RS02550: DDA3937_RS02550 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 564,416 to 564,847
_RS02550
DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886
_RS02555
Position (kb) 561
562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.982 kb on + strand at 561.143 kb on - strand, within DDA3937_RS02540 at 561.392 kb on - strand, within DDA3937_RS02540 at 561.437 kb on - strand at 561.437 kb on - strand at 561.437 kb on - strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.480 kb on - strand at 561.480 kb on - strand at 561.514 kb on + strand at 561.515 kb on - strand at 561.540 kb on - strand at 561.551 kb on + strand at 561.551 kb on + strand at 561.552 kb on - strand at 561.583 kb on - strand at 561.594 kb on + strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.631 kb on - strand at 561.631 kb on - strand at 561.693 kb on + strand at 561.693 kb on + strand at 561.694 kb on - strand at 561.694 kb on - strand at 561.795 kb on - strand at 561.795 kb on - strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.800 kb on + strand at 561.881 kb on + strand at 561.881 kb on + strand at 561.891 kb on + strand at 561.892 kb on - strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 562.321 kb on + strand, within DDA3937_RS02545 at 562.321 kb on + strand, within DDA3937_RS02545 at 562.489 kb on + strand, within DDA3937_RS02545 at 562.490 kb on - strand, within DDA3937_RS02545 at 562.696 kb on - strand, within DDA3937_RS02545 at 563.094 kb on + strand, within DDA3937_RS02545 at 563.094 kb on + strand, within DDA3937_RS02545 at 563.165 kb on + strand, within DDA3937_RS02545 at 563.166 kb on - strand, within DDA3937_RS02545 at 563.166 kb on - strand, within DDA3937_RS02545 at 563.178 kb on + strand, within DDA3937_RS02545 at 563.179 kb on - strand, within DDA3937_RS02545 at 563.179 kb on - strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.252 kb on - strand at 563.266 kb on + strand, within DDA3937_RS02545 at 563.266 kb on + strand, within DDA3937_RS02545 at 563.266 kb on + strand, within DDA3937_RS02545 at 563.434 kb on + strand at 563.435 kb on - strand, within DDA3937_RS02545 at 563.435 kb on - strand, within DDA3937_RS02545 at 563.435 kb on - strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.520 kb on - strand, within DDA3937_RS02545 at 563.611 kb on + strand, within DDA3937_RS02545 at 563.612 kb on - strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.894 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.374 kb on + strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.378 kb on - strand at 564.388 kb on + strand at 564.389 kb on - strand at 564.489 kb on + strand, within DDA3937_RS02550 at 564.489 kb on + strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.534 kb on - strand, within DDA3937_RS02550 at 564.568 kb on + strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.832 kb on + strand at 564.885 kb on - strand at 564.923 kb on + strand at 564.923 kb on + strand at 564.948 kb on + strand at 564.949 kb on - strand at 565.168 kb on - strand, within DDA3937_RS02555 at 565.168 kb on - strand, within DDA3937_RS02555 at 565.334 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 560,982 + -0.2 561,143 - DDA3937_RS02540 0.39 +0.2 561,392 - DDA3937_RS02540 0.89 -0.2 561,437 - +0.9 561,437 - -0.1 561,437 - -1.5 561,479 + +0.2 561,479 + +1.0 561,479 + -0.0 561,479 + -1.1 561,480 - +0.2 561,480 - -0.7 561,514 + -0.2 561,515 - -0.4 561,540 - -1.6 561,551 + +0.3 561,551 + +0.5 561,552 - +0.4 561,583 - +0.8 561,594 + -0.1 561,594 + +0.6 561,595 - +0.6 561,595 - -0.5 561,595 - -0.6 561,595 - -0.8 561,595 - -0.7 561,631 - +0.1 561,631 - +0.2 561,693 + +0.3 561,693 + -1.4 561,694 - -0.4 561,694 - -0.2 561,795 - -1.6 561,795 - -0.7 561,796 + -0.3 561,796 + +0.2 561,796 + +0.5 561,797 - -0.6 561,797 - +1.5 561,797 - +0.2 561,800 + +1.2 561,881 + +0.0 561,881 + +1.2 561,891 + -0.9 561,892 - -2.1 561,895 + +0.2 561,895 + -1.6 561,895 + -0.2 561,924 + -0.2 561,924 + -0.4 561,924 + -0.5 562,321 + DDA3937_RS02545 0.14 -0.6 562,321 + DDA3937_RS02545 0.14 -0.7 562,489 + DDA3937_RS02545 0.21 +2.5 562,490 - DDA3937_RS02545 0.21 +0.9 562,696 - DDA3937_RS02545 0.29 -0.1 563,094 + DDA3937_RS02545 0.46 -0.2 563,094 + DDA3937_RS02545 0.46 -1.8 563,165 + DDA3937_RS02545 0.49 -0.5 563,166 - DDA3937_RS02545 0.49 -1.1 563,166 - DDA3937_RS02545 0.49 -0.4 563,178 + DDA3937_RS02545 0.49 -0.3 563,179 - DDA3937_RS02545 0.49 -1.8 563,179 - DDA3937_RS02545 0.49 -0.4 563,251 + DDA3937_RS02545 0.52 -1.1 563,251 + DDA3937_RS02545 0.52 -1.4 563,251 + DDA3937_RS02545 0.52 -0.7 563,252 - +0.2 563,266 + DDA3937_RS02545 0.53 -0.8 563,266 + DDA3937_RS02545 0.53 -1.3 563,266 + DDA3937_RS02545 0.53 -1.1 563,434 + +0.2 563,435 - DDA3937_RS02545 0.60 +0.6 563,435 - DDA3937_RS02545 0.60 -0.9 563,435 - DDA3937_RS02545 0.60 -0.8 563,519 + DDA3937_RS02545 0.63 -0.5 563,519 + DDA3937_RS02545 0.63 -1.2 563,519 + DDA3937_RS02545 0.63 +0.3 563,519 + DDA3937_RS02545 0.63 -0.4 563,519 + DDA3937_RS02545 0.63 -2.4 563,520 - DDA3937_RS02545 0.63 +0.1 563,611 + DDA3937_RS02545 0.67 +0.1 563,612 - DDA3937_RS02545 0.67 -0.6 563,893 + DDA3937_RS02545 0.79 -0.6 563,893 + DDA3937_RS02545 0.79 -0.4 563,893 + DDA3937_RS02545 0.79 -0.3 563,894 - DDA3937_RS02545 0.79 -0.4 564,104 - DDA3937_RS02545 0.87 +0.1 564,104 - DDA3937_RS02545 0.87 -0.0 564,374 + -0.3 564,375 - +1.5 564,375 - +1.2 564,378 - +0.0 564,388 + -1.2 564,389 - -0.5 564,489 + DDA3937_RS02550 0.17 +0.6 564,489 + DDA3937_RS02550 0.17 -1.4 564,522 - DDA3937_RS02550 0.25 -0.1 564,522 - DDA3937_RS02550 0.25 -1.0 564,530 + DDA3937_RS02550 0.26 -0.0 564,530 + DDA3937_RS02550 0.26 -1.4 564,531 - DDA3937_RS02550 0.27 +0.4 564,531 - DDA3937_RS02550 0.27 +0.1 564,531 - DDA3937_RS02550 0.27 -0.6 564,533 + DDA3937_RS02550 0.27 +0.4 564,533 + DDA3937_RS02550 0.27 -0.4 564,534 - DDA3937_RS02550 0.27 +1.2 564,568 + DDA3937_RS02550 0.35 -0.2 564,569 - DDA3937_RS02550 0.35 +0.5 564,569 - DDA3937_RS02550 0.35 +0.3 564,832 + -0.8 564,885 - +0.3 564,923 + -1.8 564,923 + +1.4 564,948 + +1.2 564,949 - -2.1 565,168 - DDA3937_RS02555 0.30 +0.7 565,168 - DDA3937_RS02555 0.30 +0.5 565,334 + DDA3937_RS02555 0.46 -1.0 565,336 + DDA3937_RS02555 0.46 -0.4 565,336 + DDA3937_RS02555 0.46 +0.1 565,336 + DDA3937_RS02555 0.46 -0.7 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 +1.2 565,336 + DDA3937_RS02555 0.46 -0.2 565,336 + -0.4 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 -0.7 565,336 + DDA3937_RS02555 0.46 -1.0 565,336 + DDA3937_RS02555 0.46 -0.4 565,337 - DDA3937_RS02555 0.46 -1.2 565,337 - DDA3937_RS02555 0.46 +1.2 565,337 - DDA3937_RS02555 0.46 +1.5 565,337 - DDA3937_RS02555 0.46 +0.2 565,337 - DDA3937_RS02555 0.46 +1.2 565,337 - DDA3937_RS02555 0.46 +0.8 565,337 - DDA3937_RS02555 0.46 -0.1 565,337 - DDA3937_RS02555 0.46 +1.6
Or see this region's nucleotide sequence