Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18255 and DDA3937_RS18260 overlap by 1 nucleotides DDA3937_RS18260 and DDA3937_RS18265 overlap by 8 nucleotides DDA3937_RS18265 and DDA3937_RS18270 are separated by 15 nucleotides DDA3937_RS18270 and DDA3937_RS18275 are separated by 6 nucleotides
DDA3937_RS18255: DDA3937_RS18255 - peptidylprolyl isomerase SurA, at 4,170,021 to 4,171,313
_RS18255
DDA3937_RS18260: DDA3937_RS18260 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,171,313 to 4,172,314
_RS18260
DDA3937_RS18265: DDA3937_RS18265 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,172,307 to 4,173,125
_RS18265
DDA3937_RS18270: DDA3937_RS18270 - Co2+/Mg2+ efflux protein ApaG, at 4,173,141 to 4,173,518
_RS18270
DDA3937_RS18275: DDA3937_RS18275 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 4,173,525 to 4,174,367
_RS18275
Position (kb) 4172
4173
4174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4171.390 kb on - strand at 4171.496 kb on + strand at 4171.496 kb on + strand, within DDA3937_RS18260 at 4171.496 kb on + strand, within DDA3937_RS18260 at 4171.607 kb on + strand, within DDA3937_RS18260 at 4171.607 kb on + strand, within DDA3937_RS18260 at 4171.607 kb on + strand, within DDA3937_RS18260 at 4171.607 kb on + strand, within DDA3937_RS18260 at 4171.608 kb on - strand at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.931 kb on + strand, within DDA3937_RS18260 at 4171.932 kb on - strand, within DDA3937_RS18260 at 4171.932 kb on - strand, within DDA3937_RS18260 at 4171.999 kb on + strand, within DDA3937_RS18260 at 4172.081 kb on + strand, within DDA3937_RS18260 at 4172.103 kb on + strand, within DDA3937_RS18260 at 4172.114 kb on + strand, within DDA3937_RS18260 at 4172.114 kb on + strand, within DDA3937_RS18260 at 4172.114 kb on + strand, within DDA3937_RS18260 at 4172.115 kb on - strand, within DDA3937_RS18260 at 4172.115 kb on - strand, within DDA3937_RS18260 at 4172.115 kb on - strand, within DDA3937_RS18260 at 4172.115 kb on - strand, within DDA3937_RS18260 at 4172.286 kb on + strand at 4172.286 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.290 kb on + strand at 4172.291 kb on - strand at 4172.291 kb on - strand at 4172.291 kb on - strand at 4172.391 kb on - strand at 4172.493 kb on - strand, within DDA3937_RS18265 at 4172.493 kb on - strand, within DDA3937_RS18265 at 4172.652 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.694 kb on - strand, within DDA3937_RS18265 at 4172.802 kb on + strand, within DDA3937_RS18265 at 4172.805 kb on + strand, within DDA3937_RS18265 at 4172.805 kb on + strand, within DDA3937_RS18265 at 4172.984 kb on + strand, within DDA3937_RS18265 at 4173.123 kb on + strand at 4173.124 kb on - strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.167 kb on - strand at 4173.167 kb on - strand at 4173.167 kb on - strand at 4173.184 kb on - strand, within DDA3937_RS18270 at 4173.184 kb on - strand, within DDA3937_RS18270 at 4173.231 kb on + strand, within DDA3937_RS18270 at 4173.232 kb on - strand, within DDA3937_RS18270 at 4173.232 kb on - strand, within DDA3937_RS18270 at 4173.233 kb on + strand, within DDA3937_RS18270 at 4173.233 kb on + strand, within DDA3937_RS18270 at 4173.234 kb on - strand, within DDA3937_RS18270 at 4173.243 kb on - strand, within DDA3937_RS18270 at 4173.243 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.435 kb on + strand, within DDA3937_RS18270 at 4173.479 kb on + strand, within DDA3937_RS18270 at 4173.480 kb on - strand, within DDA3937_RS18270 at 4173.485 kb on - strand at 4173.511 kb on + strand at 4173.511 kb on + strand at 4173.511 kb on + strand at 4173.512 kb on - strand at 4173.524 kb on + strand at 4173.524 kb on + strand at 4173.525 kb on - strand at 4173.525 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.675 kb on + strand, within DDA3937_RS18275 at 4173.675 kb on + strand, within DDA3937_RS18275 at 4173.676 kb on - strand, within DDA3937_RS18275 at 4173.676 kb on - strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.745 kb on - strand, within DDA3937_RS18275 at 4173.745 kb on - strand, within DDA3937_RS18275 at 4173.829 kb on + strand, within DDA3937_RS18275 at 4173.966 kb on + strand, within DDA3937_RS18275 at 4173.967 kb on - strand, within DDA3937_RS18275 at 4173.967 kb on - strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.065 kb on - strand, within DDA3937_RS18275 at 4174.077 kb on + strand, within DDA3937_RS18275
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 4,171,390 - +0.2 4,171,496 + -0.8 4,171,496 + DDA3937_RS18260 0.18 -0.1 4,171,496 + DDA3937_RS18260 0.18 -0.2 4,171,607 + DDA3937_RS18260 0.29 +0.8 4,171,607 + DDA3937_RS18260 0.29 -0.2 4,171,607 + DDA3937_RS18260 0.29 -0.8 4,171,607 + DDA3937_RS18260 0.29 +0.8 4,171,608 - -1.0 4,171,931 + DDA3937_RS18260 0.62 -1.5 4,171,931 + DDA3937_RS18260 0.62 +1.0 4,171,931 + DDA3937_RS18260 0.62 +1.9 4,171,931 + DDA3937_RS18260 0.62 +0.0 4,171,931 + DDA3937_RS18260 0.62 -0.8 4,171,931 + DDA3937_RS18260 0.62 +0.6 4,171,932 - DDA3937_RS18260 0.62 -0.8 4,171,932 - DDA3937_RS18260 0.62 +0.8 4,171,999 + DDA3937_RS18260 0.68 +0.2 4,172,081 + DDA3937_RS18260 0.77 -0.9 4,172,103 + DDA3937_RS18260 0.79 +1.7 4,172,114 + DDA3937_RS18260 0.80 +0.2 4,172,114 + DDA3937_RS18260 0.80 -1.1 4,172,114 + DDA3937_RS18260 0.80 -1.0 4,172,115 - DDA3937_RS18260 0.80 -0.4 4,172,115 - DDA3937_RS18260 0.80 -1.1 4,172,115 - DDA3937_RS18260 0.80 -1.1 4,172,115 - DDA3937_RS18260 0.80 +0.2 4,172,286 + -0.2 4,172,286 + +1.2 4,172,290 + +1.2 4,172,290 + -0.3 4,172,290 + -0.3 4,172,290 + -0.0 4,172,290 + -0.1 4,172,290 + +0.6 4,172,290 + +0.6 4,172,291 - +0.8 4,172,291 - +0.2 4,172,291 - +0.8 4,172,391 - -0.8 4,172,493 - DDA3937_RS18265 0.23 -1.8 4,172,493 - DDA3937_RS18265 0.23 -0.4 4,172,652 + DDA3937_RS18265 0.42 -0.6 4,172,691 + DDA3937_RS18265 0.47 -0.8 4,172,691 + DDA3937_RS18265 0.47 +0.7 4,172,691 + DDA3937_RS18265 0.47 -0.3 4,172,694 - DDA3937_RS18265 0.47 -2.8 4,172,802 + DDA3937_RS18265 0.60 +1.0 4,172,805 + DDA3937_RS18265 0.61 +1.8 4,172,805 + DDA3937_RS18265 0.61 -0.8 4,172,984 + DDA3937_RS18265 0.83 -1.1 4,173,123 + -1.0 4,173,124 - -0.1 4,173,164 + +1.7 4,173,164 + -0.4 4,173,164 + -0.0 4,173,164 + -0.8 4,173,165 - +0.3 4,173,165 - +0.1 4,173,165 - -0.4 4,173,165 - -0.2 4,173,166 + -0.0 4,173,166 + -0.3 4,173,166 + +0.4 4,173,166 + -0.8 4,173,166 + +3.4 4,173,167 - -0.2 4,173,167 - +1.2 4,173,167 - +0.4 4,173,184 - DDA3937_RS18270 0.11 +0.3 4,173,184 - DDA3937_RS18270 0.11 -0.5 4,173,231 + DDA3937_RS18270 0.24 -0.3 4,173,232 - DDA3937_RS18270 0.24 +0.7 4,173,232 - DDA3937_RS18270 0.24 -0.3 4,173,233 + DDA3937_RS18270 0.24 -1.1 4,173,233 + DDA3937_RS18270 0.24 -0.2 4,173,234 - DDA3937_RS18270 0.25 -0.4 4,173,243 - DDA3937_RS18270 0.27 -0.4 4,173,243 - DDA3937_RS18270 0.27 -0.4 4,173,297 - DDA3937_RS18270 0.41 -0.8 4,173,297 - DDA3937_RS18270 0.41 -1.8 4,173,297 - DDA3937_RS18270 0.41 -0.4 4,173,435 + DDA3937_RS18270 0.78 -0.9 4,173,479 + DDA3937_RS18270 0.89 -0.6 4,173,480 - DDA3937_RS18270 0.90 +0.3 4,173,485 - -0.3 4,173,511 + -0.2 4,173,511 + +0.0 4,173,511 + -1.1 4,173,512 - -0.4 4,173,524 + +0.6 4,173,524 + -2.9 4,173,525 - -1.1 4,173,525 - -0.2 4,173,531 - -0.4 4,173,531 - -0.3 4,173,531 - -1.4 4,173,531 - -0.4 4,173,534 + +0.9 4,173,534 + +0.3 4,173,534 + -1.3 4,173,534 + -2.3 4,173,534 + -0.0 4,173,535 - +0.2 4,173,535 - -0.9 4,173,535 - -1.0 4,173,535 - -0.3 4,173,535 - -0.6 4,173,535 - -1.6 4,173,535 - -2.2 4,173,535 - -0.3 4,173,675 + DDA3937_RS18275 0.18 -0.5 4,173,675 + DDA3937_RS18275 0.18 -0.8 4,173,676 - DDA3937_RS18275 0.18 -1.1 4,173,676 - DDA3937_RS18275 0.18 -2.5 4,173,744 + DDA3937_RS18275 0.26 -1.0 4,173,744 + DDA3937_RS18275 0.26 -1.3 4,173,744 + DDA3937_RS18275 0.26 -0.3 4,173,745 - DDA3937_RS18275 0.26 +0.2 4,173,745 - DDA3937_RS18275 0.26 -0.1 4,173,829 + DDA3937_RS18275 0.36 +0.5 4,173,966 + DDA3937_RS18275 0.52 -0.9 4,173,967 - DDA3937_RS18275 0.52 +0.1 4,173,967 - DDA3937_RS18275 0.52 -0.6 4,173,990 + DDA3937_RS18275 0.55 +0.9 4,173,990 + DDA3937_RS18275 0.55 -0.3 4,173,990 + DDA3937_RS18275 0.55 -1.6 4,173,990 + DDA3937_RS18275 0.55 +0.1 4,173,991 - DDA3937_RS18275 0.55 -0.1 4,173,991 - DDA3937_RS18275 0.55 -2.3 4,173,991 - DDA3937_RS18275 0.55 -1.7 4,173,991 - DDA3937_RS18275 0.55 -0.6 4,174,060 + DDA3937_RS18275 0.63 -1.8 4,174,060 + DDA3937_RS18275 0.63 +0.5 4,174,060 + DDA3937_RS18275 0.63 +0.1 4,174,060 + DDA3937_RS18275 0.63 +0.0 4,174,060 + DDA3937_RS18275 0.63 -0.8 4,174,060 + DDA3937_RS18275 0.63 +1.2 4,174,060 + DDA3937_RS18275 0.63 -0.9 4,174,061 - DDA3937_RS18275 0.64 +0.3 4,174,061 - DDA3937_RS18275 0.64 -1.4 4,174,061 - DDA3937_RS18275 0.64 -0.4 4,174,065 - DDA3937_RS18275 0.64 -0.5 4,174,077 + DDA3937_RS18275 0.65 -0.8
Or see this region's nucleotide sequence