Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18175

Experiment: 1.88mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18170 and DDA3937_RS18175 are separated by 3 nucleotidesDDA3937_RS18175 and DDA3937_RS18180 are separated by 45 nucleotides DDA3937_RS18170: DDA3937_RS18170 - acetolactate synthase large subunit, at 4,149,262 to 4,150,926 _RS18170 DDA3937_RS18175: DDA3937_RS18175 - acetolactate synthase small subunit, at 4,150,930 to 4,151,223 _RS18175 DDA3937_RS18180: DDA3937_RS18180 - DedA family protein, at 4,151,269 to 4,152,036 _RS18180 Position (kb) 4150 4151 4152Strain fitness (log2 ratio) -2 -1 0 1 2at 4150.014 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.041 kb on + strand, within DDA3937_RS18170at 4150.042 kb on - strand, within DDA3937_RS18170at 4150.042 kb on - strand, within DDA3937_RS18170at 4150.042 kb on - strand, within DDA3937_RS18170at 4150.047 kb on + strand, within DDA3937_RS18170at 4150.047 kb on + strand, within DDA3937_RS18170at 4150.048 kb on - strand, within DDA3937_RS18170at 4150.048 kb on - strand, within DDA3937_RS18170at 4150.048 kb on - strand, within DDA3937_RS18170at 4150.048 kb on - strand, within DDA3937_RS18170at 4150.048 kb on - strand, within DDA3937_RS18170at 4150.152 kb on + strand, within DDA3937_RS18170at 4150.398 kb on + strand, within DDA3937_RS18170at 4150.398 kb on + strand, within DDA3937_RS18170at 4150.399 kb on - strand, within DDA3937_RS18170at 4150.628 kb on + strand, within DDA3937_RS18170at 4150.628 kb on + strand, within DDA3937_RS18170at 4150.690 kb on + strand, within DDA3937_RS18170at 4150.691 kb on - strand, within DDA3937_RS18170at 4150.924 kb on + strandat 4150.924 kb on + strandat 4150.925 kb on - strandat 4150.925 kb on - strandat 4150.977 kb on - strand, within DDA3937_RS18175at 4151.006 kb on + strand, within DDA3937_RS18175at 4151.006 kb on + strand, within DDA3937_RS18175at 4151.006 kb on + strand, within DDA3937_RS18175at 4151.006 kb on + strand, within DDA3937_RS18175at 4151.007 kb on - strand, within DDA3937_RS18175at 4151.055 kb on + strand, within DDA3937_RS18175at 4151.055 kb on + strand, within DDA3937_RS18175at 4151.055 kb on + strand, within DDA3937_RS18175at 4151.055 kb on + strand, within DDA3937_RS18175at 4151.056 kb on - strand, within DDA3937_RS18175at 4151.056 kb on - strand, within DDA3937_RS18175at 4151.056 kb on - strand, within DDA3937_RS18175at 4151.056 kb on - strand, within DDA3937_RS18175at 4151.190 kb on + strand, within DDA3937_RS18175at 4151.190 kb on + strand, within DDA3937_RS18175at 4151.190 kb on + strand, within DDA3937_RS18175at 4151.191 kb on - strand, within DDA3937_RS18175at 4151.191 kb on - strand, within DDA3937_RS18175at 4151.304 kb on - strandat 4151.574 kb on - strand, within DDA3937_RS18180at 4151.632 kb on + strand, within DDA3937_RS18180at 4151.710 kb on - strand, within DDA3937_RS18180at 4151.712 kb on + strand, within DDA3937_RS18180at 4151.713 kb on - strand, within DDA3937_RS18180at 4151.713 kb on - strand, within DDA3937_RS18180at 4151.778 kb on + strandat 4151.779 kb on - strand, within DDA3937_RS18180at 4152.036 kb on + strandat 4152.037 kb on - strandat 4152.060 kb on + strandat 4152.083 kb on + strandat 4152.084 kb on - strandat 4152.103 kb on - strandat 4152.103 kb on - strandat 4152.103 kb on - strandat 4152.111 kb on + strandat 4152.111 kb on + strandat 4152.112 kb on - strandat 4152.112 kb on - strandat 4152.114 kb on + strandat 4152.114 kb on + strandat 4152.115 kb on - strandat 4152.115 kb on - strandat 4152.118 kb on - strandat 4152.188 kb on + strandat 4152.189 kb on - strandat 4152.190 kb on + strandat 4152.191 kb on - strandat 4152.191 kb on - strandat 4152.204 kb on + strandat 4152.204 kb on + strandat 4152.205 kb on - strandat 4152.212 kb on + strandat 4152.212 kb on + strandat 4152.212 kb on + strandat 4152.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1.88mM_PTB
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4,150,014 + DDA3937_RS18170 0.45 +1.8
4,150,041 + DDA3937_RS18170 0.47 -0.8
4,150,041 + DDA3937_RS18170 0.47 -0.3
4,150,041 + DDA3937_RS18170 0.47 +1.0
4,150,041 + DDA3937_RS18170 0.47 -0.3
4,150,041 + DDA3937_RS18170 0.47 +0.2
4,150,041 + DDA3937_RS18170 0.47 +0.2
4,150,041 + DDA3937_RS18170 0.47 -1.2
4,150,041 + DDA3937_RS18170 0.47 -0.1
4,150,041 + DDA3937_RS18170 0.47 +0.7
4,150,042 - DDA3937_RS18170 0.47 -0.2
4,150,042 - DDA3937_RS18170 0.47 -0.3
4,150,042 - DDA3937_RS18170 0.47 -0.6
4,150,047 + DDA3937_RS18170 0.47 -0.5
4,150,047 + DDA3937_RS18170 0.47 -0.5
4,150,048 - DDA3937_RS18170 0.47 -1.1
4,150,048 - DDA3937_RS18170 0.47 -0.0
4,150,048 - DDA3937_RS18170 0.47 -0.6
4,150,048 - DDA3937_RS18170 0.47 -0.1
4,150,048 - DDA3937_RS18170 0.47 +1.2
4,150,152 + DDA3937_RS18170 0.53 -0.2
4,150,398 + DDA3937_RS18170 0.68 -0.8
4,150,398 + DDA3937_RS18170 0.68 -0.7
4,150,399 - DDA3937_RS18170 0.68 +0.3
4,150,628 + DDA3937_RS18170 0.82 -0.2
4,150,628 + DDA3937_RS18170 0.82 -0.1
4,150,690 + DDA3937_RS18170 0.86 -0.4
4,150,691 - DDA3937_RS18170 0.86 -0.6
4,150,924 + +0.8
4,150,924 + -0.5
4,150,925 - -0.1
4,150,925 - +0.2
4,150,977 - DDA3937_RS18175 0.16 +0.7
4,151,006 + DDA3937_RS18175 0.26 -0.3
4,151,006 + DDA3937_RS18175 0.26 +0.2
4,151,006 + DDA3937_RS18175 0.26 +0.7
4,151,006 + DDA3937_RS18175 0.26 -0.4
4,151,007 - DDA3937_RS18175 0.26 +0.0
4,151,055 + DDA3937_RS18175 0.43 -0.4
4,151,055 + DDA3937_RS18175 0.43 +0.3
4,151,055 + DDA3937_RS18175 0.43 +1.3
4,151,055 + DDA3937_RS18175 0.43 -0.4
4,151,056 - DDA3937_RS18175 0.43 +0.1
4,151,056 - DDA3937_RS18175 0.43 +0.4
4,151,056 - DDA3937_RS18175 0.43 +0.2
4,151,056 - DDA3937_RS18175 0.43 +0.2
4,151,190 + DDA3937_RS18175 0.88 -0.7
4,151,190 + DDA3937_RS18175 0.88 +0.4
4,151,190 + DDA3937_RS18175 0.88 -0.3
4,151,191 - DDA3937_RS18175 0.89 +1.2
4,151,191 - DDA3937_RS18175 0.89 -1.1
4,151,304 - +0.0
4,151,574 - DDA3937_RS18180 0.40 -2.1
4,151,632 + DDA3937_RS18180 0.47 -0.5
4,151,710 - DDA3937_RS18180 0.57 +0.5
4,151,712 + DDA3937_RS18180 0.58 -1.4
4,151,713 - DDA3937_RS18180 0.58 -1.6
4,151,713 - DDA3937_RS18180 0.58 -0.4
4,151,778 + -1.4
4,151,779 - DDA3937_RS18180 0.66 -1.0
4,152,036 + -0.6
4,152,037 - -1.3
4,152,060 + -0.4
4,152,083 + -1.1
4,152,084 - +0.4
4,152,103 - -0.2
4,152,103 - -1.1
4,152,103 - +1.5
4,152,111 + +0.3
4,152,111 + -1.1
4,152,112 - -0.6
4,152,112 - -0.3
4,152,114 + +0.1
4,152,114 + -0.4
4,152,115 - -0.7
4,152,115 - -0.0
4,152,118 - -0.7
4,152,188 + -0.1
4,152,189 - +0.6
4,152,190 + -0.4
4,152,191 - -0.5
4,152,191 - +0.2
4,152,204 + -0.7
4,152,204 + +1.8
4,152,205 - +0.2
4,152,212 + -0.2
4,152,212 + -0.6
4,152,212 + +1.8
4,152,213 - -0.1

Or see this region's nucleotide sequence