Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05385 and DDA3937_RS05390 are separated by 301 nucleotides DDA3937_RS05390 and DDA3937_RS05395 are separated by 36 nucleotides DDA3937_RS05395 and DDA3937_RS05400 are separated by 505 nucleotides
DDA3937_RS05385: DDA3937_RS05385 - asparaginase, at 1,200,392 to 1,201,438
_RS05385
DDA3937_RS05390: DDA3937_RS05390 - shikimate kinase AroL, at 1,201,740 to 1,202,261
_RS05390
DDA3937_RS05395: DDA3937_RS05395 - pyrimidine/purine nucleoside phosphorylase, at 1,202,298 to 1,202,582
_RS05395
DDA3937_RS05400: DDA3937_RS05400 - methyl-accepting chemotaxis protein, at 1,203,088 to 1,204,878
_RS05400
Position (kb) 1202
1203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1201.421 kb on + strand at 1201.421 kb on + strand at 1201.433 kb on + strand at 1201.433 kb on + strand at 1201.433 kb on + strand at 1201.434 kb on - strand at 1201.434 kb on - strand at 1201.434 kb on - strand at 1201.434 kb on - strand at 1201.521 kb on - strand at 1201.527 kb on + strand at 1201.527 kb on + strand at 1201.528 kb on - strand at 1201.631 kb on + strand at 1201.632 kb on - strand at 1201.642 kb on - strand at 1201.642 kb on - strand at 1201.650 kb on + strand at 1201.650 kb on + strand at 1201.651 kb on - strand at 1201.757 kb on + strand at 1201.822 kb on - strand, within DDA3937_RS05390 at 1201.842 kb on - strand, within DDA3937_RS05390 at 1202.034 kb on + strand, within DDA3937_RS05390 at 1202.034 kb on + strand, within DDA3937_RS05390 at 1202.034 kb on + strand, within DDA3937_RS05390 at 1202.034 kb on + strand, within DDA3937_RS05390 at 1202.035 kb on - strand, within DDA3937_RS05390 at 1202.035 kb on - strand, within DDA3937_RS05390 at 1202.035 kb on - strand, within DDA3937_RS05390 at 1202.035 kb on - strand, within DDA3937_RS05390 at 1202.038 kb on + strand, within DDA3937_RS05390 at 1202.039 kb on - strand, within DDA3937_RS05390 at 1202.166 kb on + strand, within DDA3937_RS05390 at 1202.166 kb on + strand, within DDA3937_RS05390 at 1202.184 kb on + strand, within DDA3937_RS05390 at 1202.184 kb on + strand, within DDA3937_RS05390 at 1202.185 kb on - strand, within DDA3937_RS05390 at 1202.185 kb on - strand, within DDA3937_RS05390 at 1202.185 kb on - strand, within DDA3937_RS05390 at 1202.185 kb on - strand, within DDA3937_RS05390 at 1202.297 kb on + strand at 1202.297 kb on + strand at 1202.298 kb on - strand at 1202.309 kb on - strand at 1202.317 kb on - strand at 1202.332 kb on + strand, within DDA3937_RS05395 at 1202.400 kb on + strand, within DDA3937_RS05395 at 1202.400 kb on + strand, within DDA3937_RS05395 at 1202.401 kb on - strand, within DDA3937_RS05395 at 1202.401 kb on - strand, within DDA3937_RS05395 at 1202.402 kb on + strand, within DDA3937_RS05395 at 1202.403 kb on - strand, within DDA3937_RS05395 at 1202.403 kb on - strand, within DDA3937_RS05395 at 1202.403 kb on - strand, within DDA3937_RS05395 at 1202.403 kb on - strand, within DDA3937_RS05395 at 1202.437 kb on + strand, within DDA3937_RS05395 at 1202.562 kb on + strand at 1202.562 kb on + strand at 1202.563 kb on - strand at 1202.563 kb on - strand at 1202.563 kb on - strand at 1202.575 kb on - strand at 1202.580 kb on + strand at 1202.592 kb on + strand at 1202.593 kb on - strand at 1202.648 kb on + strand at 1202.648 kb on + strand at 1202.648 kb on + strand at 1202.648 kb on + strand at 1202.649 kb on - strand at 1202.649 kb on - strand at 1202.649 kb on - strand at 1202.649 kb on - strand at 1202.649 kb on - strand at 1202.649 kb on - strand at 1202.729 kb on + strand at 1202.729 kb on + strand at 1202.730 kb on - strand at 1202.730 kb on - strand at 1202.751 kb on + strand at 1202.751 kb on + strand at 1202.751 kb on + strand at 1202.751 kb on + strand at 1202.752 kb on - strand at 1202.752 kb on - strand at 1202.752 kb on - strand at 1202.752 kb on - strand at 1202.761 kb on + strand at 1202.761 kb on + strand at 1202.761 kb on + strand at 1202.762 kb on - strand at 1202.762 kb on - strand at 1202.817 kb on + strand at 1202.819 kb on + strand at 1202.823 kb on + strand at 1202.824 kb on - strand at 1202.824 kb on - strand at 1202.828 kb on - strand at 1202.828 kb on - strand at 1202.828 kb on - strand at 1202.829 kb on + strand at 1202.890 kb on + strand at 1202.919 kb on + strand at 1202.919 kb on + strand at 1203.003 kb on - strand at 1203.026 kb on + strand at 1203.030 kb on + strand at 1203.030 kb on + strand at 1203.031 kb on - strand at 1203.052 kb on - strand at 1203.072 kb on + strand at 1203.076 kb on + strand at 1203.076 kb on + strand at 1203.088 kb on - strand at 1203.093 kb on + strand at 1203.093 kb on + strand at 1203.093 kb on + strand at 1203.093 kb on + strand at 1203.093 kb on + strand at 1203.093 kb on + strand at 1203.094 kb on - strand at 1203.094 kb on - strand at 1203.094 kb on - strand at 1203.094 kb on - strand at 1203.094 kb on - strand at 1203.133 kb on - strand at 1203.152 kb on + strand at 1203.156 kb on + strand at 1203.172 kb on + strand at 1203.187 kb on - strand at 1203.187 kb on - strand at 1203.190 kb on + strand at 1203.191 kb on - strand at 1203.191 kb on - strand at 1203.191 kb on - strand at 1203.192 kb on + strand at 1203.192 kb on + strand at 1203.193 kb on - strand at 1203.211 kb on - strand at 1203.211 kb on - strand at 1203.285 kb on + strand, within DDA3937_RS05400 at 1203.286 kb on - strand, within DDA3937_RS05400 at 1203.286 kb on - strand, within DDA3937_RS05400 at 1203.286 kb on - strand, within DDA3937_RS05400 at 1203.298 kb on - strand, within DDA3937_RS05400 at 1203.306 kb on - strand, within DDA3937_RS05400 at 1203.306 kb on - strand, within DDA3937_RS05400 at 1203.332 kb on + strand, within DDA3937_RS05400 at 1203.333 kb on - strand, within DDA3937_RS05400 at 1203.363 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.373 kb on + strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.374 kb on - strand, within DDA3937_RS05400 at 1203.375 kb on + strand, within DDA3937_RS05400 at 1203.376 kb on - strand, within DDA3937_RS05400 at 1203.376 kb on - strand, within DDA3937_RS05400 at 1203.382 kb on + strand, within DDA3937_RS05400 at 1203.433 kb on + strand at 1203.433 kb on + strand, within DDA3937_RS05400 at 1203.433 kb on + strand, within DDA3937_RS05400 at 1203.433 kb on + strand, within DDA3937_RS05400 at 1203.433 kb on + strand, within DDA3937_RS05400 at 1203.433 kb on + strand, within DDA3937_RS05400 at 1203.434 kb on - strand, within DDA3937_RS05400 at 1203.434 kb on - strand, within DDA3937_RS05400 at 1203.457 kb on + strand, within DDA3937_RS05400 at 1203.458 kb on - strand, within DDA3937_RS05400 at 1203.502 kb on + strand, within DDA3937_RS05400 at 1203.503 kb on - strand, within DDA3937_RS05400 at 1203.523 kb on - strand, within DDA3937_RS05400 at 1203.523 kb on - strand, within DDA3937_RS05400 at 1203.523 kb on - strand, within DDA3937_RS05400
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 1,201,421 + -0.3 1,201,421 + -2.0 1,201,433 + +0.1 1,201,433 + +0.2 1,201,433 + +0.8 1,201,434 - -0.5 1,201,434 - -0.2 1,201,434 - +1.3 1,201,434 - -0.0 1,201,521 - +0.5 1,201,527 + -2.6 1,201,527 + -0.0 1,201,528 - +0.3 1,201,631 + +0.3 1,201,632 - -0.7 1,201,642 - +0.6 1,201,642 - -0.4 1,201,650 + +1.0 1,201,650 + +0.3 1,201,651 - -1.1 1,201,757 + -0.5 1,201,822 - DDA3937_RS05390 0.16 +0.6 1,201,842 - DDA3937_RS05390 0.20 -0.0 1,202,034 + DDA3937_RS05390 0.56 -0.6 1,202,034 + DDA3937_RS05390 0.56 -1.3 1,202,034 + DDA3937_RS05390 0.56 -0.1 1,202,034 + DDA3937_RS05390 0.56 -0.6 1,202,035 - DDA3937_RS05390 0.57 +0.7 1,202,035 - DDA3937_RS05390 0.57 +0.7 1,202,035 - DDA3937_RS05390 0.57 -0.3 1,202,035 - DDA3937_RS05390 0.57 -0.4 1,202,038 + DDA3937_RS05390 0.57 -0.1 1,202,039 - DDA3937_RS05390 0.57 +1.0 1,202,166 + DDA3937_RS05390 0.82 +0.1 1,202,166 + DDA3937_RS05390 0.82 +0.1 1,202,184 + DDA3937_RS05390 0.85 +1.6 1,202,184 + DDA3937_RS05390 0.85 -0.6 1,202,185 - DDA3937_RS05390 0.85 -0.4 1,202,185 - DDA3937_RS05390 0.85 -0.1 1,202,185 - DDA3937_RS05390 0.85 -0.9 1,202,185 - DDA3937_RS05390 0.85 -0.3 1,202,297 + -0.5 1,202,297 + -1.1 1,202,298 - -0.3 1,202,309 - -1.3 1,202,317 - -0.0 1,202,332 + DDA3937_RS05395 0.12 -1.5 1,202,400 + DDA3937_RS05395 0.36 -0.2 1,202,400 + DDA3937_RS05395 0.36 -0.2 1,202,401 - DDA3937_RS05395 0.36 -0.6 1,202,401 - DDA3937_RS05395 0.36 +1.4 1,202,402 + DDA3937_RS05395 0.36 +0.2 1,202,403 - DDA3937_RS05395 0.37 -2.3 1,202,403 - DDA3937_RS05395 0.37 -0.4 1,202,403 - DDA3937_RS05395 0.37 -2.0 1,202,403 - DDA3937_RS05395 0.37 -0.3 1,202,437 + DDA3937_RS05395 0.49 -0.7 1,202,562 + -0.0 1,202,562 + +0.3 1,202,563 - -0.7 1,202,563 - +0.7 1,202,563 - -0.1 1,202,575 - -0.3 1,202,580 + +0.1 1,202,592 + +0.3 1,202,593 - +1.0 1,202,648 + -0.4 1,202,648 + +0.4 1,202,648 + -0.8 1,202,648 + -0.0 1,202,649 - -0.5 1,202,649 - +0.4 1,202,649 - -0.0 1,202,649 - -0.9 1,202,649 - -0.3 1,202,649 - +1.0 1,202,729 + -0.3 1,202,729 + -0.7 1,202,730 - +0.9 1,202,730 - -1.0 1,202,751 + -0.7 1,202,751 + -0.4 1,202,751 + -0.5 1,202,751 + +0.2 1,202,752 - -0.5 1,202,752 - +0.1 1,202,752 - -0.7 1,202,752 - -0.2 1,202,761 + -1.1 1,202,761 + -0.6 1,202,761 + +1.0 1,202,762 - +1.0 1,202,762 - -0.2 1,202,817 + -1.6 1,202,819 + +0.2 1,202,823 + -0.8 1,202,824 - -0.0 1,202,824 - -0.6 1,202,828 - -1.5 1,202,828 - +1.4 1,202,828 - -1.8 1,202,829 + +0.4 1,202,890 + -0.4 1,202,919 + +0.6 1,202,919 + -0.8 1,203,003 - +0.2 1,203,026 + -1.4 1,203,030 + +0.1 1,203,030 + +0.8 1,203,031 - -1.3 1,203,052 - -0.6 1,203,072 + -0.8 1,203,076 + -1.0 1,203,076 + +0.8 1,203,088 - -0.3 1,203,093 + -1.5 1,203,093 + +0.3 1,203,093 + -0.2 1,203,093 + -1.0 1,203,093 + +0.1 1,203,093 + -2.0 1,203,094 - -0.6 1,203,094 - -2.3 1,203,094 - +1.2 1,203,094 - -0.0 1,203,094 - -0.1 1,203,133 - -1.3 1,203,152 + -0.3 1,203,156 + -0.0 1,203,172 + -1.3 1,203,187 - +0.1 1,203,187 - -0.4 1,203,190 + +1.1 1,203,191 - +1.4 1,203,191 - +0.1 1,203,191 - +1.5 1,203,192 + -0.3 1,203,192 + +0.1 1,203,193 - -0.0 1,203,211 - +0.1 1,203,211 - +0.1 1,203,285 + DDA3937_RS05400 0.11 +0.4 1,203,286 - DDA3937_RS05400 0.11 -0.2 1,203,286 - DDA3937_RS05400 0.11 -0.6 1,203,286 - DDA3937_RS05400 0.11 +0.2 1,203,298 - DDA3937_RS05400 0.12 -0.5 1,203,306 - DDA3937_RS05400 0.12 +0.6 1,203,306 - DDA3937_RS05400 0.12 -0.7 1,203,332 + DDA3937_RS05400 0.14 +0.8 1,203,333 - DDA3937_RS05400 0.14 -0.2 1,203,363 + DDA3937_RS05400 0.15 -0.2 1,203,373 + DDA3937_RS05400 0.16 -0.3 1,203,373 + DDA3937_RS05400 0.16 +0.5 1,203,373 + DDA3937_RS05400 0.16 -0.7 1,203,373 + DDA3937_RS05400 0.16 -0.6 1,203,373 + DDA3937_RS05400 0.16 +1.2 1,203,373 + DDA3937_RS05400 0.16 -0.3 1,203,373 + DDA3937_RS05400 0.16 +0.8 1,203,373 + DDA3937_RS05400 0.16 -0.4 1,203,373 + DDA3937_RS05400 0.16 -0.4 1,203,373 + DDA3937_RS05400 0.16 +0.1 1,203,373 + DDA3937_RS05400 0.16 -0.2 1,203,373 + DDA3937_RS05400 0.16 +0.7 1,203,373 + DDA3937_RS05400 0.16 +0.4 1,203,373 + DDA3937_RS05400 0.16 -0.7 1,203,373 + DDA3937_RS05400 0.16 +2.6 1,203,373 + DDA3937_RS05400 0.16 -0.2 1,203,373 + DDA3937_RS05400 0.16 -0.7 1,203,374 - DDA3937_RS05400 0.16 -2.3 1,203,374 - DDA3937_RS05400 0.16 +0.8 1,203,374 - DDA3937_RS05400 0.16 -0.8 1,203,374 - DDA3937_RS05400 0.16 -0.6 1,203,374 - DDA3937_RS05400 0.16 -0.4 1,203,374 - DDA3937_RS05400 0.16 -0.4 1,203,374 - DDA3937_RS05400 0.16 -0.2 1,203,374 - DDA3937_RS05400 0.16 -0.3 1,203,374 - DDA3937_RS05400 0.16 +0.4 1,203,374 - DDA3937_RS05400 0.16 +0.4 1,203,375 + DDA3937_RS05400 0.16 -0.6 1,203,376 - DDA3937_RS05400 0.16 -0.7 1,203,376 - DDA3937_RS05400 0.16 -0.2 1,203,382 + DDA3937_RS05400 0.16 +0.3 1,203,433 + -0.9 1,203,433 + DDA3937_RS05400 0.19 +1.0 1,203,433 + DDA3937_RS05400 0.19 -0.0 1,203,433 + DDA3937_RS05400 0.19 +0.7 1,203,433 + DDA3937_RS05400 0.19 -0.2 1,203,433 + DDA3937_RS05400 0.19 +0.3 1,203,434 - DDA3937_RS05400 0.19 -1.6 1,203,434 - DDA3937_RS05400 0.19 -0.3 1,203,457 + DDA3937_RS05400 0.21 -0.2 1,203,458 - DDA3937_RS05400 0.21 -0.8 1,203,502 + DDA3937_RS05400 0.23 -0.3 1,203,503 - DDA3937_RS05400 0.23 -0.1 1,203,523 - DDA3937_RS05400 0.24 -1.6 1,203,523 - DDA3937_RS05400 0.24 +0.5 1,203,523 - DDA3937_RS05400 0.24 -0.3
Or see this region's nucleotide sequence