Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03310

Experiment: 1.88mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03300 and DDA3937_RS03305 are separated by 88 nucleotidesDDA3937_RS03305 and DDA3937_RS03310 are separated by 40 nucleotidesDDA3937_RS03310 and DDA3937_RS03315 are separated by 168 nucleotides DDA3937_RS03300: DDA3937_RS03300 - site-specific tyrosine recombinase XerD, at 720,584 to 721,483 _RS03300 DDA3937_RS03305: DDA3937_RS03305 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 721,572 to 722,288 _RS03305 DDA3937_RS03310: DDA3937_RS03310 - single-stranded-DNA-specific exonuclease RecJ, at 722,329 to 724,059 _RS03310 DDA3937_RS03315: DDA3937_RS03315 - peptide chain release factor 2, at 724,228 to 725,326 _RS03315 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1at 721.534 kb on + strandat 721.558 kb on - strandat 721.565 kb on + strandat 721.566 kb on - strandat 721.566 kb on - strandat 721.566 kb on - strandat 721.585 kb on + strandat 721.585 kb on + strandat 721.585 kb on + strandat 721.585 kb on + strandat 721.585 kb on + strandat 721.588 kb on + strandat 721.588 kb on + strandat 721.588 kb on + strandat 721.588 kb on + strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.589 kb on - strandat 721.661 kb on - strand, within DDA3937_RS03305at 721.661 kb on - strand, within DDA3937_RS03305at 721.661 kb on - strand, within DDA3937_RS03305at 721.661 kb on - strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strand, within DDA3937_RS03305at 721.746 kb on + strandat 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.747 kb on - strand, within DDA3937_RS03305at 721.748 kb on + strand, within DDA3937_RS03305at 721.748 kb on + strand, within DDA3937_RS03305at 721.749 kb on - strandat 721.788 kb on + strand, within DDA3937_RS03305at 721.788 kb on + strand, within DDA3937_RS03305at 721.788 kb on + strand, within DDA3937_RS03305at 721.788 kb on + strand, within DDA3937_RS03305at 721.788 kb on + strand, within DDA3937_RS03305at 721.789 kb on - strand, within DDA3937_RS03305at 721.789 kb on - strand, within DDA3937_RS03305at 721.789 kb on - strandat 721.789 kb on - strand, within DDA3937_RS03305at 721.789 kb on - strand, within DDA3937_RS03305at 721.875 kb on + strand, within DDA3937_RS03305at 721.875 kb on + strand, within DDA3937_RS03305at 721.876 kb on - strand, within DDA3937_RS03305at 721.877 kb on + strand, within DDA3937_RS03305at 721.877 kb on + strand, within DDA3937_RS03305at 721.922 kb on + strandat 721.922 kb on + strand, within DDA3937_RS03305at 721.922 kb on + strand, within DDA3937_RS03305at 721.922 kb on + strand, within DDA3937_RS03305at 721.922 kb on + strandat 721.923 kb on - strand, within DDA3937_RS03305at 721.923 kb on - strand, within DDA3937_RS03305at 721.923 kb on - strand, within DDA3937_RS03305at 721.965 kb on + strand, within DDA3937_RS03305at 721.966 kb on - strand, within DDA3937_RS03305at 721.966 kb on - strand, within DDA3937_RS03305at 721.966 kb on - strand, within DDA3937_RS03305at 721.992 kb on + strand, within DDA3937_RS03305at 722.091 kb on - strand, within DDA3937_RS03305at 722.123 kb on + strand, within DDA3937_RS03305at 722.123 kb on + strand, within DDA3937_RS03305at 722.124 kb on - strand, within DDA3937_RS03305at 722.124 kb on - strand, within DDA3937_RS03305at 722.124 kb on - strand, within DDA3937_RS03305at 722.303 kb on + strandat 722.412 kb on - strandat 722.412 kb on - strandat 722.413 kb on + strandat 722.414 kb on - strandat 722.613 kb on + strand, within DDA3937_RS03310at 722.614 kb on - strand, within DDA3937_RS03310at 722.614 kb on - strand, within DDA3937_RS03310at 722.638 kb on + strand, within DDA3937_RS03310at 722.743 kb on - strand, within DDA3937_RS03310at 723.060 kb on + strand, within DDA3937_RS03310at 723.080 kb on + strand, within DDA3937_RS03310at 723.081 kb on - strand, within DDA3937_RS03310at 723.222 kb on + strand, within DDA3937_RS03310at 723.222 kb on + strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.223 kb on - strand, within DDA3937_RS03310at 723.252 kb on + strand, within DDA3937_RS03310at 723.338 kb on + strand, within DDA3937_RS03310at 723.338 kb on + strand, within DDA3937_RS03310at 723.338 kb on + strand, within DDA3937_RS03310at 723.406 kb on + strand, within DDA3937_RS03310at 723.406 kb on + strand, within DDA3937_RS03310at 723.406 kb on + strand, within DDA3937_RS03310at 723.406 kb on + strand, within DDA3937_RS03310at 723.406 kb on + strand, within DDA3937_RS03310at 723.407 kb on - strand, within DDA3937_RS03310at 723.407 kb on - strand, within DDA3937_RS03310at 723.985 kb on + strandat 723.986 kb on - strandat 724.025 kb on + strandat 724.026 kb on - strandat 724.079 kb on - strandat 724.122 kb on - strandat 724.130 kb on - strandat 724.138 kb on + strandat 724.138 kb on + strandat 724.138 kb on + strandat 724.148 kb on + strandat 724.148 kb on + strandat 724.183 kb on + strandat 724.183 kb on + strandat 724.183 kb on + strandat 724.183 kb on + strandat 724.192 kb on + strandat 724.192 kb on + strandat 724.213 kb on + strandat 724.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1.88mM_PTB
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721,534 + -0.2
721,558 - -0.2
721,565 + +0.3
721,566 - +0.2
721,566 - -1.3
721,566 - -0.6
721,585 + -0.8
721,585 + -2.8
721,585 + -0.8
721,585 + +0.7
721,585 + -1.4
721,588 + -1.2
721,588 + -1.3
721,588 + +0.6
721,588 + -1.8
721,589 - -0.6
721,589 - +0.2
721,589 - -1.0
721,589 - -1.4
721,589 - +0.7
721,589 - -0.7
721,589 - +1.2
721,661 - DDA3937_RS03305 0.12 -1.7
721,661 - DDA3937_RS03305 0.12 -1.8
721,661 - DDA3937_RS03305 0.12 -2.5
721,661 - DDA3937_RS03305 0.12 -1.8
721,746 + DDA3937_RS03305 0.24 -1.1
721,746 + DDA3937_RS03305 0.24 -0.3
721,746 + DDA3937_RS03305 0.24 -1.2
721,746 + DDA3937_RS03305 0.24 -1.8
721,746 + DDA3937_RS03305 0.24 -0.4
721,746 + DDA3937_RS03305 0.24 -1.3
721,746 + DDA3937_RS03305 0.24 -1.3
721,746 + DDA3937_RS03305 0.24 -0.8
721,746 + DDA3937_RS03305 0.24 -0.4
721,746 + DDA3937_RS03305 0.24 -0.4
721,746 + DDA3937_RS03305 0.24 -0.9
721,746 + DDA3937_RS03305 0.24 -0.3
721,746 + DDA3937_RS03305 0.24 -1.3
721,746 + -0.2
721,747 - DDA3937_RS03305 0.24 -0.2
721,747 - DDA3937_RS03305 0.24 -0.4
721,747 - DDA3937_RS03305 0.24 +0.2
721,747 - DDA3937_RS03305 0.24 -0.1
721,747 - DDA3937_RS03305 0.24 -0.4
721,747 - DDA3937_RS03305 0.24 -2.3
721,747 - DDA3937_RS03305 0.24 -0.4
721,748 + DDA3937_RS03305 0.25 -0.1
721,748 + DDA3937_RS03305 0.25 -2.2
721,749 - +0.4
721,788 + DDA3937_RS03305 0.30 +0.8
721,788 + DDA3937_RS03305 0.30 -2.5
721,788 + DDA3937_RS03305 0.30 -0.8
721,788 + DDA3937_RS03305 0.30 +0.7
721,788 + DDA3937_RS03305 0.30 -1.8
721,789 - DDA3937_RS03305 0.30 +0.2
721,789 - DDA3937_RS03305 0.30 -1.7
721,789 - -0.8
721,789 - DDA3937_RS03305 0.30 -0.3
721,789 - DDA3937_RS03305 0.30 -1.3
721,875 + DDA3937_RS03305 0.42 -1.3
721,875 + DDA3937_RS03305 0.42 -1.5
721,876 - DDA3937_RS03305 0.42 -1.7
721,877 + DDA3937_RS03305 0.43 +0.7
721,877 + DDA3937_RS03305 0.43 -1.8
721,922 + +0.2
721,922 + DDA3937_RS03305 0.49 -0.8
721,922 + DDA3937_RS03305 0.49 -0.8
721,922 + DDA3937_RS03305 0.49 -1.5
721,922 + -1.8
721,923 - DDA3937_RS03305 0.49 +0.6
721,923 - DDA3937_RS03305 0.49 -1.0
721,923 - DDA3937_RS03305 0.49 -1.3
721,965 + DDA3937_RS03305 0.55 -1.4
721,966 - DDA3937_RS03305 0.55 -1.2
721,966 - DDA3937_RS03305 0.55 -0.3
721,966 - DDA3937_RS03305 0.55 -1.6
721,992 + DDA3937_RS03305 0.59 +1.2
722,091 - DDA3937_RS03305 0.72 -0.1
722,123 + DDA3937_RS03305 0.77 -0.2
722,123 + DDA3937_RS03305 0.77 -0.8
722,124 - DDA3937_RS03305 0.77 -1.3
722,124 - DDA3937_RS03305 0.77 -0.6
722,124 - DDA3937_RS03305 0.77 -1.2
722,303 + -0.9
722,412 - -0.4
722,412 - -0.7
722,413 + -0.7
722,414 - -2.7
722,613 + DDA3937_RS03310 0.16 -1.1
722,614 - DDA3937_RS03310 0.16 +1.2
722,614 - DDA3937_RS03310 0.16 -0.3
722,638 + DDA3937_RS03310 0.18 -0.8
722,743 - DDA3937_RS03310 0.24 +0.6
723,060 + DDA3937_RS03310 0.42 +1.3
723,080 + DDA3937_RS03310 0.43 -1.3
723,081 - DDA3937_RS03310 0.43 +0.2
723,222 + DDA3937_RS03310 0.52 +0.2
723,222 + DDA3937_RS03310 0.52 +0.6
723,223 - DDA3937_RS03310 0.52 -0.1
723,223 - DDA3937_RS03310 0.52 -1.2
723,223 - DDA3937_RS03310 0.52 -0.3
723,223 - DDA3937_RS03310 0.52 -0.7
723,223 - DDA3937_RS03310 0.52 -1.8
723,223 - DDA3937_RS03310 0.52 -0.4
723,252 + DDA3937_RS03310 0.53 +0.2
723,338 + DDA3937_RS03310 0.58 -0.6
723,338 + DDA3937_RS03310 0.58 -0.8
723,338 + DDA3937_RS03310 0.58 -1.0
723,406 + DDA3937_RS03310 0.62 -1.3
723,406 + DDA3937_RS03310 0.62 -0.3
723,406 + DDA3937_RS03310 0.62 -0.3
723,406 + DDA3937_RS03310 0.62 -0.5
723,406 + DDA3937_RS03310 0.62 -0.2
723,407 - DDA3937_RS03310 0.62 +0.1
723,407 - DDA3937_RS03310 0.62 -1.5
723,985 + -0.2
723,986 - -0.4
724,025 + +0.7
724,026 - -1.0
724,079 - +0.0
724,122 - -0.1
724,130 - -0.6
724,138 + +0.5
724,138 + -1.7
724,138 + +0.7
724,148 + +0.3
724,148 + -1.1
724,183 + +0.8
724,183 + -0.2
724,183 + +0.7
724,183 + +0.3
724,192 + +0.6
724,192 + -0.4
724,213 + -0.1
724,213 + -0.2

Or see this region's nucleotide sequence