Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01700

Experiment: 1.88mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01690 and DDA3937_RS01695 are separated by 92 nucleotidesDDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotidesDDA3937_RS01700 and DDA3937_RS01705 are separated by 37 nucleotidesDDA3937_RS01705 and DDA3937_RS01710 overlap by 4 nucleotides DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034 _RS01690 DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702 _RS01695 DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303 _RS01700 DDA3937_RS01705: DDA3937_RS01705 - YraN family protein, at 377,341 to 377,697 _RS01705 DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745 _RS01710 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 375.726 kb on + strand, within DDA3937_RS01690at 375.726 kb on + strand, within DDA3937_RS01690at 375.780 kb on + strand, within DDA3937_RS01690at 375.807 kb on + strand, within DDA3937_RS01690at 375.808 kb on - strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.810 kb on - strand, within DDA3937_RS01690at 375.810 kb on - strand, within DDA3937_RS01690at 375.848 kb on - strand, within DDA3937_RS01690at 376.019 kb on + strandat 376.020 kb on - strandat 376.025 kb on + strandat 376.036 kb on + strandat 376.128 kb on + strandat 376.129 kb on - strandat 376.129 kb on - strandat 376.137 kb on + strandat 376.137 kb on + strandat 376.278 kb on - strand, within DDA3937_RS01695at 376.278 kb on - strand, within DDA3937_RS01695at 376.360 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.511 kb on + strand, within DDA3937_RS01695at 376.512 kb on - strand, within DDA3937_RS01695at 376.645 kb on + strandat 376.645 kb on + strandat 376.646 kb on - strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.693 kb on - strandat 376.693 kb on - strandat 376.714 kb on + strandat 376.715 kb on - strandat 376.742 kb on + strandat 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.870 kb on + strand, within DDA3937_RS01700at 376.871 kb on - strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.011 kb on - strand, within DDA3937_RS01700at 377.066 kb on + strand, within DDA3937_RS01700at 377.067 kb on - strand, within DDA3937_RS01700at 377.111 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.154 kb on - strand, within DDA3937_RS01700at 377.253 kb on + strandat 377.288 kb on + strandat 377.402 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.578 kb on - strand, within DDA3937_RS01705at 377.669 kb on + strandat 377.884 kb on + strandat 378.010 kb on + strand, within DDA3937_RS01710at 378.010 kb on + strand, within DDA3937_RS01710at 378.107 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.111 kb on - strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710

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Per-strain Table

Position Strand Gene LocusTag Fraction 1.88mM_PTB
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375,726 + DDA3937_RS01690 0.76 -0.4
375,726 + DDA3937_RS01690 0.76 +0.2
375,780 + DDA3937_RS01690 0.80 +0.3
375,807 + DDA3937_RS01690 0.82 -0.9
375,808 - DDA3937_RS01690 0.83 +0.3
375,809 + DDA3937_RS01690 0.83 +0.6
375,809 + DDA3937_RS01690 0.83 -1.5
375,809 + DDA3937_RS01690 0.83 -0.1
375,809 + DDA3937_RS01690 0.83 -1.1
375,809 + DDA3937_RS01690 0.83 +0.7
375,810 - DDA3937_RS01690 0.83 -0.2
375,810 - DDA3937_RS01690 0.83 -0.2
375,848 - DDA3937_RS01690 0.86 -1.3
376,019 + -2.3
376,020 - +0.9
376,025 + -0.5
376,036 + +0.0
376,128 + +0.5
376,129 - -1.3
376,129 - -0.6
376,137 + -0.4
376,137 + +0.5
376,278 - DDA3937_RS01695 0.26 -1.1
376,278 - DDA3937_RS01695 0.26 +2.3
376,360 + DDA3937_RS01695 0.40 -2.5
376,380 + DDA3937_RS01695 0.44 +0.3
376,380 + DDA3937_RS01695 0.44 -0.3
376,380 + DDA3937_RS01695 0.44 +0.1
376,380 + DDA3937_RS01695 0.44 +0.3
376,380 + DDA3937_RS01695 0.44 -2.7
376,380 + DDA3937_RS01695 0.44 -0.5
376,381 - DDA3937_RS01695 0.44 +0.9
376,381 - DDA3937_RS01695 0.44 -1.1
376,511 + DDA3937_RS01695 0.67 +0.5
376,512 - DDA3937_RS01695 0.67 -1.5
376,645 + -2.1
376,645 + -0.3
376,646 - +0.3
376,692 + -0.0
376,692 + -1.2
376,692 + -0.5
376,692 + -0.5
376,692 + -0.8
376,693 - -0.5
376,693 - -2.3
376,714 + +0.6
376,715 - +0.3
376,742 + +0.0
376,779 - DDA3937_RS01700 0.11 -0.5
376,779 - DDA3937_RS01700 0.11 -0.7
376,779 - DDA3937_RS01700 0.11 -0.8
376,779 - DDA3937_RS01700 0.11 -1.2
376,779 - DDA3937_RS01700 0.11 -0.3
376,870 + DDA3937_RS01700 0.27 -1.1
376,871 - DDA3937_RS01700 0.27 +0.7
377,008 + DDA3937_RS01700 0.50 -0.2
377,008 + DDA3937_RS01700 0.50 -0.2
377,011 - DDA3937_RS01700 0.50 -0.5
377,066 + DDA3937_RS01700 0.60 +0.2
377,067 - DDA3937_RS01700 0.60 -0.1
377,111 + DDA3937_RS01700 0.67 -0.7
377,153 + DDA3937_RS01700 0.74 -1.1
377,153 + DDA3937_RS01700 0.74 -0.8
377,154 - DDA3937_RS01700 0.75 -0.6
377,253 + +0.5
377,288 + +0.5
377,402 - DDA3937_RS01705 0.17 -0.3
377,500 - DDA3937_RS01705 0.45 +1.9
377,500 - DDA3937_RS01705 0.45 +0.2
377,578 - DDA3937_RS01705 0.66 +0.7
377,669 + +0.6
377,884 + +0.5
378,010 + DDA3937_RS01710 0.15 +1.4
378,010 + DDA3937_RS01710 0.15 -0.1
378,107 + DDA3937_RS01710 0.20 -0.5
378,110 + DDA3937_RS01710 0.20 -0.3
378,110 + DDA3937_RS01710 0.20 -0.2
378,110 + DDA3937_RS01710 0.20 +0.7
378,110 + DDA3937_RS01710 0.20 +1.1
378,110 + DDA3937_RS01710 0.20 +0.9
378,110 + DDA3937_RS01710 0.20 +0.9
378,110 + DDA3937_RS01710 0.20 +0.5
378,110 + DDA3937_RS01710 0.20 +0.1
378,110 + DDA3937_RS01710 0.20 -0.0
378,110 + DDA3937_RS01710 0.20 +0.0
378,110 + DDA3937_RS01710 0.20 +0.0
378,111 - DDA3937_RS01710 0.20 +1.0
378,112 + DDA3937_RS01710 0.20 +1.0
378,112 + DDA3937_RS01710 0.20 -1.2
378,112 + DDA3937_RS01710 0.20 +0.2
378,113 - DDA3937_RS01710 0.20 +0.3
378,113 - DDA3937_RS01710 0.20 -0.5
378,113 - DDA3937_RS01710 0.20 +0.4
378,113 - DDA3937_RS01710 0.20 -0.9
378,283 + DDA3937_RS01710 0.29 +0.9
378,283 + DDA3937_RS01710 0.29 +1.5
378,283 + DDA3937_RS01710 0.29 -0.1
378,284 - DDA3937_RS01710 0.29 -0.4
378,284 - DDA3937_RS01710 0.29 +0.0
378,284 - DDA3937_RS01710 0.29 -0.2
378,284 - DDA3937_RS01710 0.29 +0.5

Or see this region's nucleotide sequence