Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05945

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,337,553	+				+0.3
1,337,553	+				+0.0
1,337,553	+				-1.3
1,337,593	-				+0.5
1,337,621	+				+2.3
1,337,621	+				-0.3
1,337,621	+				+0.2
1,337,621	+				-0.5
1,337,621	+				+0.2
1,337,621	+				+0.3
1,337,622	-				+0.1
1,337,622	-				-1.2
1,337,622	-				+0.2
1,337,622	-				-0.2
1,337,629	-				+0.3
1,337,636	+				+0.7
1,337,636	+				-0.0
1,337,642	-				-1.4
1,337,646	+				+0.5
1,337,646	+				-0.8
1,337,647	-				-0.3
1,337,688	+				-0.5
1,337,688	+				-0.8
1,337,688	+				+0.5
1,337,688	+				-0.3
1,337,689	-				-0.3
1,337,697	+				+1.9
1,337,768	+				+0.2
1,337,768	+				-0.4
1,337,768	+				+0.0
1,337,768	+				-0.0
1,337,769	-				+0.2
1,337,769	-				-0.5
1,337,769	-				-1.3
1,337,769	-				+0.7
1,337,769	-				+0.3
1,337,769	-				-0.5
1,337,769	-				-0.8
1,337,785	+				+0.7
1,337,787	+				-0.5
1,337,787	+				+1.7
1,337,787	+				-0.6
1,337,788	-				-0.8
1,337,860	+		DDA3937_RS05940	0.12	+0.4
1,337,885	+		DDA3937_RS05940	0.17	+0.1
1,337,885	+		DDA3937_RS05940	0.17	-1.3
1,337,885	+		DDA3937_RS05940	0.17	-0.6
1,337,886	-		DDA3937_RS05940	0.17	+2.7
1,337,978	+		DDA3937_RS05940	0.34	+0.5
1,337,978	+		DDA3937_RS05940	0.34	-0.4
1,337,979	-		DDA3937_RS05940	0.34	-1.4
1,337,996	+		DDA3937_RS05940	0.37	+0.5
1,337,997	-		DDA3937_RS05940	0.38	+0.6
1,338,047	+		DDA3937_RS05940	0.47	-0.4
1,338,047	+		DDA3937_RS05940	0.47	-0.9
1,338,068	-		DDA3937_RS05940	0.51	-0.1
1,338,068	-		DDA3937_RS05940	0.51	-0.8
1,338,068	-		DDA3937_RS05940	0.51	-1.0
1,338,146	+		DDA3937_RS05940	0.65	-0.7
1,338,146	+		DDA3937_RS05940	0.65	+1.8
1,338,146	+		DDA3937_RS05940	0.65	-0.7
1,338,146	+		DDA3937_RS05940	0.65	-0.8
1,338,146	+		DDA3937_RS05940	0.65	-0.3
1,338,146	+		DDA3937_RS05940	0.65	-1.3
1,338,147	-		DDA3937_RS05940	0.65	-0.3
1,338,150	-		DDA3937_RS05940	0.66	+0.4
1,338,185	+		DDA3937_RS05940	0.72	-1.3
1,338,185	+		DDA3937_RS05940	0.72	-0.6
1,338,186	-				+0.7
1,338,254	+		DDA3937_RS05940	0.85	-0.4
1,338,254	+		DDA3937_RS05940	0.85	-0.5
1,338,255	-		DDA3937_RS05940	0.85	-1.0
1,338,255	-		DDA3937_RS05940	0.85	-0.6
1,338,255	-		DDA3937_RS05940	0.85	+0.2
1,338,255	-		DDA3937_RS05940	0.85	-0.0
1,338,256	+		DDA3937_RS05940	0.85	+0.3
1,338,256	+		DDA3937_RS05940	0.85	+0.0
1,338,257	-		DDA3937_RS05940	0.85	-0.8
1,338,261	-		DDA3937_RS05940	0.86	-1.9
1,338,311	+				-0.1
1,338,311	+				-1.0
1,338,311	+				-2.3
1,338,312	-				-0.4
1,338,312	-				+0.3
1,338,379	-				-2.8
1,338,426	-				-0.0
1,338,441	+				+0.3
1,338,441	+				+0.7
1,338,462	+				-0.2
1,338,462	+				-0.3
1,338,462	+				+0.1
1,338,463	-				-0.7
1,338,463	-				+1.5
1,338,496	+				+2.0
1,338,496	+				-0.5
1,338,496	+				+0.5
1,338,496	+				-0.5
1,338,496	+				+0.3
1,338,496	+				-0.1
1,338,496	+				-0.0
1,338,496	+				-0.8
1,338,496	+				+0.1
1,338,496	+				-1.6
1,338,496	+				+1.1
1,338,496	+				+0.0
1,338,496	+				+0.6
1,338,497	-				+0.7
1,338,497	-				-0.3
1,338,497	-				-0.5
1,338,497	-				-0.9
1,338,497	-				+0.2
1,338,497	-				+0.7
1,338,497	-				-0.5
1,338,497	-				-0.3
1,338,497	-				-0.3
1,338,497	-				+1.1
1,338,501	-				-0.7
1,338,501	-				-0.7
1,338,501	-				-1.1
1,338,561	+				+0.2
1,338,562	-				-0.3
1,338,611	+		DDA3937_RS05945	0.11	-0.4
1,338,934	+		DDA3937_RS05945	0.38	+0.3
1,339,069	+		DDA3937_RS05945	0.50	-1.1
1,339,070	-		DDA3937_RS05945	0.50	+0.2
1,339,070	-		DDA3937_RS05945	0.50	-0.3
1,339,070	-		DDA3937_RS05945	0.50	+0.5
1,339,070	-		DDA3937_RS05945	0.50	-0.3
1,339,455	+		DDA3937_RS05945	0.82	-0.1
1,339,455	+		DDA3937_RS05945	0.82	+2.3
1,339,455	+		DDA3937_RS05945	0.82	+0.3
1,339,455	+		DDA3937_RS05945	0.82	+0.7
1,339,456	-		DDA3937_RS05945	0.82	-0.3
1,339,551	-				+0.9
1,339,557	-				-0.6
1,339,629	+				+0.7
1,339,629	+				+1.0
1,339,668	+				-0.5
1,339,668	+				-0.2
1,339,669	-				+0.3
1,339,717	-				+0.7
1,339,732	+				+0.2
1,339,733	-				+0.9
1,339,733	-				-0.1
1,339,745	-				+0.2
1,339,817	+		DDA3937_RS05950	0.10	-0.1
1,339,818	-		DDA3937_RS05950	0.10	-0.7
1,339,818	-		DDA3937_RS05950	0.10	+1.0
1,339,989	-		DDA3937_RS05950	0.30	+0.2
1,340,112	+		DDA3937_RS05950	0.45	-0.4
1,340,113	-		DDA3937_RS05950	0.45	+1.2
1,340,178	+		DDA3937_RS05950	0.52	+0.5
1,340,235	+		DDA3937_RS05950	0.59	+1.3
1,340,338	+		DDA3937_RS05950	0.71	-0.3
1,340,338	+		DDA3937_RS05950	0.71	+0.1
1,340,338	+		DDA3937_RS05950	0.71	+1.3
1,340,339	-		DDA3937_RS05950	0.71	-0.1
1,340,339	-		DDA3937_RS05950	0.71	-0.2
1,340,414	+		DDA3937_RS05950	0.80	-1.4
1,340,497	+		DDA3937_RS05950	0.89	-0.8
1,340,497	+		DDA3937_RS05950	0.89	-0.0
1,340,497	+		DDA3937_RS05950	0.89	-0.1
1,340,498	-		DDA3937_RS05950	0.89	+0.5
1,340,583	+				-0.2
1,340,583	+				-0.1
1,340,583	+				-0.4
1,340,583	+				-0.1
1,340,584	-				+0.2
1,340,584	-				-0.1
1,340,584	-				-0.8
1,340,584	-				+0.2
1,340,618	-				+1.1