Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03245 and DDA3937_RS03250 are separated by 31 nucleotides DDA3937_RS03250 and DDA3937_RS03255 are separated by 112 nucleotides
DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409
_RS03245
DDA3937_RS03250: DDA3937_RS03250 - glycine cleavage system protein GcvH, at 710,441 to 710,848
_RS03250
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
Position (kb) 710
711 Strain fitness (log2 ratio) -2
-1
0
1 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.564 kb on - strand, within DDA3937_RS03245 at 709.630 kb on + strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.704 kb on + strand, within DDA3937_RS03245 at 709.704 kb on + strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.775 kb on + strand, within DDA3937_RS03245 at 709.775 kb on + strand, within DDA3937_RS03245 at 709.873 kb on + strand, within DDA3937_RS03245 at 709.874 kb on - strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.876 kb on - strand at 709.891 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.215 kb on - strand, within DDA3937_RS03245 at 710.281 kb on - strand, within DDA3937_RS03245 at 710.323 kb on - strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.471 kb on - strand at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.673 kb on + strand, within DDA3937_RS03250 at 710.674 kb on - strand at 710.847 kb on - strand at 710.847 kb on - strand at 710.904 kb on + strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 711.014 kb on + strand at 711.014 kb on + strand at 711.083 kb on + strand at 711.083 kb on + strand at 711.084 kb on - strand at 711.084 kb on - strand at 711.153 kb on + strand at 711.153 kb on + strand at 711.211 kb on - strand at 711.225 kb on + strand at 711.226 kb on - strand at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.604 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.838 kb on - strand, within DDA3937_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 709,561 + DDA3937_RS03245 0.23 -1.4 709,561 + +0.3 709,561 + DDA3937_RS03245 0.23 -0.4 709,561 + DDA3937_RS03245 0.23 +0.5 709,561 + +0.2 709,561 + DDA3937_RS03245 0.23 -0.6 709,562 - DDA3937_RS03245 0.23 -0.4 709,562 - DDA3937_RS03245 0.23 -0.3 709,562 - DDA3937_RS03245 0.23 +0.7 709,562 - DDA3937_RS03245 0.23 -0.7 709,562 - DDA3937_RS03245 0.23 -1.3 709,562 - DDA3937_RS03245 0.23 +1.6 709,562 - DDA3937_RS03245 0.23 -0.1 709,562 - DDA3937_RS03245 0.23 +1.3 709,564 - DDA3937_RS03245 0.23 +0.0 709,630 + DDA3937_RS03245 0.29 +0.7 709,631 - DDA3937_RS03245 0.29 +0.5 709,631 - DDA3937_RS03245 0.29 +1.4 709,631 - DDA3937_RS03245 0.29 -0.7 709,704 + DDA3937_RS03245 0.36 -0.6 709,704 + DDA3937_RS03245 0.36 +0.9 709,705 - DDA3937_RS03245 0.36 -0.2 709,705 - DDA3937_RS03245 0.36 +0.1 709,705 - DDA3937_RS03245 0.36 +1.6 709,775 + DDA3937_RS03245 0.42 +0.7 709,775 + DDA3937_RS03245 0.42 -0.3 709,873 + DDA3937_RS03245 0.51 -0.2 709,874 - DDA3937_RS03245 0.51 +0.1 709,875 + DDA3937_RS03245 0.51 -1.1 709,875 + DDA3937_RS03245 0.51 -0.9 709,875 + DDA3937_RS03245 0.51 -0.4 709,875 + DDA3937_RS03245 0.51 -1.1 709,876 - -0.1 709,891 + DDA3937_RS03245 0.53 -1.3 710,139 + DDA3937_RS03245 0.75 +0.7 710,139 + DDA3937_RS03245 0.75 -0.4 710,140 - DDA3937_RS03245 0.75 +0.6 710,140 - DDA3937_RS03245 0.75 -0.6 710,215 - DDA3937_RS03245 0.82 -1.1 710,281 - DDA3937_RS03245 0.88 +1.4 710,323 - -0.3 710,468 + -0.3 710,468 + -1.0 710,468 + -0.8 710,469 - -0.7 710,469 - -0.1 710,469 - -1.0 710,469 - +0.1 710,469 - +0.6 710,469 - -0.1 710,469 - -0.1 710,469 - +0.4 710,469 - -0.1 710,470 + -1.9 710,470 + +0.2 710,470 + +0.2 710,470 + +0.3 710,470 + -0.1 710,471 - +0.6 710,652 - DDA3937_RS03250 0.52 -0.9 710,652 - DDA3937_RS03250 0.52 -0.9 710,652 - DDA3937_RS03250 0.52 +0.9 710,673 + DDA3937_RS03250 0.57 -0.5 710,674 - -0.3 710,847 - +0.4 710,847 - -0.4 710,904 + +0.2 710,905 - -0.7 710,905 - +0.7 710,905 - -0.9 710,905 - +0.1 710,905 - -0.3 711,014 + -0.7 711,014 + +1.5 711,083 + -0.4 711,083 + -0.7 711,084 - +0.1 711,084 - -0.1 711,153 + -0.1 711,153 + +0.7 711,211 - +0.3 711,225 + -0.8 711,226 - -0.5 711,285 + DDA3937_RS03255 0.11 +0.2 711,285 + DDA3937_RS03255 0.11 -1.0 711,285 + DDA3937_RS03255 0.11 -1.7 711,286 - DDA3937_RS03255 0.11 -0.6 711,286 - DDA3937_RS03255 0.11 -0.1 711,286 - DDA3937_RS03255 0.11 -1.3 711,296 + DDA3937_RS03255 0.12 -0.8 711,296 + DDA3937_RS03255 0.12 -0.6 711,297 - DDA3937_RS03255 0.12 +0.4 711,297 - DDA3937_RS03255 0.12 -0.9 711,585 + DDA3937_RS03255 0.22 -0.1 711,585 + DDA3937_RS03255 0.22 +0.3 711,585 + DDA3937_RS03255 0.22 -0.8 711,586 - DDA3937_RS03255 0.22 +0.0 711,586 - DDA3937_RS03255 0.22 -0.2 711,604 + DDA3937_RS03255 0.22 -0.3 711,752 + DDA3937_RS03255 0.28 -0.2 711,752 + DDA3937_RS03255 0.28 -0.2 711,757 + DDA3937_RS03255 0.28 +0.6 711,757 + DDA3937_RS03255 0.28 +0.1 711,757 + DDA3937_RS03255 0.28 -0.0 711,758 - DDA3937_RS03255 0.28 -0.5 711,758 - DDA3937_RS03255 0.28 -0.3 711,838 - DDA3937_RS03255 0.31 -0.5
Or see this region's nucleotide sequence