Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04190

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04185 and DDA3937_RS04190 overlap by 25 nucleotidesDDA3937_RS04190 and DDA3937_RS04195 are separated by 156 nucleotides DDA3937_RS04185: DDA3937_RS04185 - phage portal protein, at 926,566 to 927,615 _RS04185 DDA3937_RS04190: DDA3937_RS04190 - hypothetical protein, at 927,591 to 929,366 _RS04190 DDA3937_RS04195: DDA3937_RS04195 - GPO family capsid scaffolding protein, at 929,523 to 930,359 _RS04195 Position (kb) 927 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 926.785 kb on + strand, within DDA3937_RS04185at 926.785 kb on + strand, within DDA3937_RS04185at 926.785 kb on + strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.890 kb on + strand, within DDA3937_RS04185at 926.970 kb on + strand, within DDA3937_RS04185at 926.970 kb on + strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.023 kb on + strand, within DDA3937_RS04185at 927.024 kb on - strand, within DDA3937_RS04185at 927.084 kb on - strand, within DDA3937_RS04185at 927.084 kb on - strand, within DDA3937_RS04185at 927.098 kb on + strand, within DDA3937_RS04185at 927.099 kb on - strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.120 kb on - strand, within DDA3937_RS04185at 927.152 kb on + strand, within DDA3937_RS04185at 927.179 kb on - strand, within DDA3937_RS04185at 927.198 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.213 kb on - strandat 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.262 kb on + strand, within DDA3937_RS04185at 927.263 kb on - strand, within DDA3937_RS04185at 927.263 kb on - strand, within DDA3937_RS04185at 927.267 kb on + strand, within DDA3937_RS04185at 927.268 kb on - strand, within DDA3937_RS04185at 927.268 kb on - strand, within DDA3937_RS04185at 927.296 kb on + strand, within DDA3937_RS04185at 927.347 kb on + strand, within DDA3937_RS04185at 927.347 kb on + strand, within DDA3937_RS04185at 927.348 kb on - strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.450 kb on - strand, within DDA3937_RS04185at 927.456 kb on + strand, within DDA3937_RS04185at 927.456 kb on + strand, within DDA3937_RS04185at 927.470 kb on + strand, within DDA3937_RS04185at 927.471 kb on - strand, within DDA3937_RS04185at 927.532 kb on - strandat 927.532 kb on - strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.535 kb on - strandat 927.638 kb on - strandat 927.638 kb on - strandat 927.767 kb on + strandat 927.767 kb on + strandat 927.768 kb on - strandat 927.768 kb on - strandat 927.958 kb on + strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 928.066 kb on + strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.135 kb on - strand, within DDA3937_RS04190at 928.262 kb on + strand, within DDA3937_RS04190at 928.262 kb on + strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.291 kb on + strand, within DDA3937_RS04190at 928.363 kb on + strand, within DDA3937_RS04190at 928.519 kb on + strand, within DDA3937_RS04190at 928.519 kb on + strand, within DDA3937_RS04190at 928.520 kb on - strand, within DDA3937_RS04190at 928.520 kb on - strand, within DDA3937_RS04190at 928.569 kb on - strand, within DDA3937_RS04190at 928.597 kb on + strand, within DDA3937_RS04190at 928.610 kb on - strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.624 kb on + strand, within DDA3937_RS04190at 928.625 kb on - strand, within DDA3937_RS04190at 928.625 kb on - strand, within DDA3937_RS04190at 928.643 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.741 kb on + strand, within DDA3937_RS04190at 928.742 kb on - strand, within DDA3937_RS04190at 928.742 kb on - strand, within DDA3937_RS04190at 928.837 kb on + strand, within DDA3937_RS04190at 928.837 kb on + strand, within DDA3937_RS04190at 928.871 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strandat 928.874 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strand, within DDA3937_RS04190at 928.874 kb on + strand, within DDA3937_RS04190at 928.875 kb on - strand, within DDA3937_RS04190at 928.875 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.025 kb on - strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.027 kb on + strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.028 kb on - strand, within DDA3937_RS04190at 929.081 kb on + strand, within DDA3937_RS04190at 929.205 kb on - strandat 929.252 kb on - strandat 929.254 kb on + strandat 929.255 kb on - strandat 929.410 kb on - strandat 929.410 kb on - strandat 929.580 kb on - strandat 929.626 kb on - strand, within DDA3937_RS04195at 929.704 kb on + strand, within DDA3937_RS04195at 929.752 kb on + strand, within DDA3937_RS04195at 929.753 kb on - strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.774 kb on - strand, within DDA3937_RS04195at 929.818 kb on + strand, within DDA3937_RS04195at 929.856 kb on + strand, within DDA3937_RS04195at 929.942 kb on - strand, within DDA3937_RS04195at 929.954 kb on - strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 930.009 kb on - strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.211 kb on + strand, within DDA3937_RS04195at 930.212 kb on - strand, within DDA3937_RS04195at 930.300 kb on - strandat 930.300 kb on - strandat 930.303 kb on - strandat 930.333 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
926,785 + DDA3937_RS04185 0.21 -0.8
926,785 + DDA3937_RS04185 0.21 -0.5
926,785 + DDA3937_RS04185 0.21 -0.0
926,786 - DDA3937_RS04185 0.21 +0.3
926,786 - DDA3937_RS04185 0.21 -0.9
926,786 - DDA3937_RS04185 0.21 -1.4
926,890 + DDA3937_RS04185 0.31 -0.1
926,970 + DDA3937_RS04185 0.38 -1.1
926,970 + DDA3937_RS04185 0.38 -0.7
927,021 - DDA3937_RS04185 0.43 +0.2
927,021 - DDA3937_RS04185 0.43 +0.8
927,021 - DDA3937_RS04185 0.43 -1.2
927,021 - DDA3937_RS04185 0.43 -0.5
927,023 + DDA3937_RS04185 0.44 +1.1
927,024 - DDA3937_RS04185 0.44 -1.3
927,084 - DDA3937_RS04185 0.49 +0.1
927,084 - DDA3937_RS04185 0.49 -0.5
927,098 + DDA3937_RS04185 0.51 +0.5
927,099 - DDA3937_RS04185 0.51 -0.4
927,119 + DDA3937_RS04185 0.53 -0.5
927,119 + DDA3937_RS04185 0.53 -0.3
927,119 + DDA3937_RS04185 0.53 +1.2
927,119 + DDA3937_RS04185 0.53 +1.0
927,120 - DDA3937_RS04185 0.53 +1.9
927,152 + DDA3937_RS04185 0.56 -0.5
927,179 - DDA3937_RS04185 0.58 -0.2
927,198 + DDA3937_RS04185 0.60 -0.8
927,212 + DDA3937_RS04185 0.62 +0.3
927,212 + DDA3937_RS04185 0.62 -1.1
927,212 + DDA3937_RS04185 0.62 -0.1
927,212 + DDA3937_RS04185 0.62 -0.8
927,213 - -0.5
927,213 - DDA3937_RS04185 0.62 +0.4
927,213 - DDA3937_RS04185 0.62 -0.1
927,213 - DDA3937_RS04185 0.62 +0.1
927,213 - DDA3937_RS04185 0.62 +0.4
927,213 - DDA3937_RS04185 0.62 +0.3
927,213 - DDA3937_RS04185 0.62 -1.6
927,213 - DDA3937_RS04185 0.62 +0.9
927,213 - DDA3937_RS04185 0.62 +0.2
927,213 - DDA3937_RS04185 0.62 -0.3
927,262 + DDA3937_RS04185 0.66 +0.5
927,263 - DDA3937_RS04185 0.66 -0.4
927,263 - DDA3937_RS04185 0.66 +0.4
927,267 + DDA3937_RS04185 0.67 -0.3
927,268 - DDA3937_RS04185 0.67 +0.3
927,268 - DDA3937_RS04185 0.67 -1.3
927,296 + DDA3937_RS04185 0.70 +0.3
927,347 + DDA3937_RS04185 0.74 -0.1
927,347 + DDA3937_RS04185 0.74 -0.5
927,348 - DDA3937_RS04185 0.74 +0.2
927,449 + DDA3937_RS04185 0.84 +0.5
927,449 + DDA3937_RS04185 0.84 -1.1
927,449 + DDA3937_RS04185 0.84 -0.8
927,449 + DDA3937_RS04185 0.84 +0.4
927,450 - DDA3937_RS04185 0.84 -2.1
927,456 + DDA3937_RS04185 0.85 +0.5
927,456 + DDA3937_RS04185 0.85 -0.5
927,470 + DDA3937_RS04185 0.86 -1.0
927,471 - DDA3937_RS04185 0.86 -0.2
927,532 - -0.7
927,532 - -0.6
927,534 + -0.3
927,534 + -2.9
927,534 + +1.3
927,534 + -0.1
927,534 + -0.9
927,535 - -3.1
927,638 - -0.1
927,638 - +0.3
927,767 + -0.6
927,767 + +0.2
927,768 - +0.8
927,768 - +1.2
927,958 + DDA3937_RS04190 0.21 +0.0
927,959 - DDA3937_RS04190 0.21 -1.2
927,959 - DDA3937_RS04190 0.21 -0.1
927,959 - DDA3937_RS04190 0.21 +0.0
927,959 - DDA3937_RS04190 0.21 -0.7
927,962 + DDA3937_RS04190 0.21 -1.3
927,962 + DDA3937_RS04190 0.21 +0.5
927,962 + DDA3937_RS04190 0.21 +0.5
927,962 + DDA3937_RS04190 0.21 +1.5
927,962 + DDA3937_RS04190 0.21 -0.1
927,963 - DDA3937_RS04190 0.21 -0.1
927,963 - DDA3937_RS04190 0.21 -1.4
927,963 - DDA3937_RS04190 0.21 +0.3
927,963 - DDA3937_RS04190 0.21 -0.4
927,963 - DDA3937_RS04190 0.21 +0.3
927,963 - DDA3937_RS04190 0.21 -0.2
927,963 - DDA3937_RS04190 0.21 +0.6
927,963 - DDA3937_RS04190 0.21 +0.2
928,066 + DDA3937_RS04190 0.27 +0.5
928,067 - DDA3937_RS04190 0.27 +0.6
928,067 - DDA3937_RS04190 0.27 -0.2
928,067 - DDA3937_RS04190 0.27 -0.5
928,135 - DDA3937_RS04190 0.31 -0.5
928,262 + DDA3937_RS04190 0.38 -0.3
928,262 + DDA3937_RS04190 0.38 -1.0
928,263 - DDA3937_RS04190 0.38 -0.6
928,263 - DDA3937_RS04190 0.38 +0.9
928,263 - DDA3937_RS04190 0.38 -0.2
928,263 - DDA3937_RS04190 0.38 +0.6
928,263 - DDA3937_RS04190 0.38 -0.3
928,263 - DDA3937_RS04190 0.38 -0.9
928,264 + DDA3937_RS04190 0.38 +0.3
928,264 + DDA3937_RS04190 0.38 +0.3
928,264 + DDA3937_RS04190 0.38 +0.0
928,264 + DDA3937_RS04190 0.38 +0.2
928,264 + DDA3937_RS04190 0.38 +1.0
928,264 + DDA3937_RS04190 0.38 +0.3
928,264 + DDA3937_RS04190 0.38 -0.1
928,264 + DDA3937_RS04190 0.38 +0.1
928,264 + DDA3937_RS04190 0.38 +0.9
928,264 + DDA3937_RS04190 0.38 -0.2
928,265 - DDA3937_RS04190 0.38 +1.1
928,265 - DDA3937_RS04190 0.38 -1.4
928,265 - DDA3937_RS04190 0.38 -0.8
928,265 - DDA3937_RS04190 0.38 -0.5
928,265 - DDA3937_RS04190 0.38 +0.2
928,291 + DDA3937_RS04190 0.39 +0.2
928,363 + DDA3937_RS04190 0.43 +1.1
928,519 + DDA3937_RS04190 0.52 +0.2
928,519 + DDA3937_RS04190 0.52 -0.8
928,520 - DDA3937_RS04190 0.52 +0.9
928,520 - DDA3937_RS04190 0.52 -0.3
928,569 - DDA3937_RS04190 0.55 +0.1
928,597 + DDA3937_RS04190 0.57 +0.4
928,610 - DDA3937_RS04190 0.57 +1.1
928,624 + DDA3937_RS04190 0.58 +0.8
928,624 + DDA3937_RS04190 0.58 +0.1
928,624 + DDA3937_RS04190 0.58 -0.3
928,625 - DDA3937_RS04190 0.58 +0.3
928,625 - DDA3937_RS04190 0.58 +0.4
928,643 + DDA3937_RS04190 0.59 -0.0
928,741 + DDA3937_RS04190 0.65 -0.1
928,741 + DDA3937_RS04190 0.65 +0.7
928,741 + DDA3937_RS04190 0.65 +0.4
928,741 + DDA3937_RS04190 0.65 +0.7
928,742 - DDA3937_RS04190 0.65 +0.5
928,742 - DDA3937_RS04190 0.65 +0.4
928,837 + DDA3937_RS04190 0.70 -1.2
928,837 + DDA3937_RS04190 0.70 +1.5
928,871 + DDA3937_RS04190 0.72 -0.9
928,874 + +0.9
928,874 + DDA3937_RS04190 0.72 -0.5
928,874 + DDA3937_RS04190 0.72 +0.3
928,874 + DDA3937_RS04190 0.72 -0.6
928,875 - DDA3937_RS04190 0.72 +0.4
928,875 - DDA3937_RS04190 0.72 -0.3
929,025 - DDA3937_RS04190 0.81 -0.7
929,025 - DDA3937_RS04190 0.81 +0.3
929,025 - DDA3937_RS04190 0.81 -2.1
929,025 - DDA3937_RS04190 0.81 -1.0
929,027 + DDA3937_RS04190 0.81 -0.2
929,027 + DDA3937_RS04190 0.81 +0.4
929,027 + DDA3937_RS04190 0.81 +0.5
929,028 - DDA3937_RS04190 0.81 +0.2
929,028 - DDA3937_RS04190 0.81 +0.2
929,028 - DDA3937_RS04190 0.81 +0.5
929,028 - DDA3937_RS04190 0.81 +0.1
929,028 - DDA3937_RS04190 0.81 -1.0
929,028 - DDA3937_RS04190 0.81 +0.4
929,081 + DDA3937_RS04190 0.84 +0.5
929,205 - -0.4
929,252 - +0.9
929,254 + +0.1
929,255 - -1.3
929,410 - -0.1
929,410 - +0.5
929,580 - -2.1
929,626 - DDA3937_RS04195 0.12 -0.7
929,704 + DDA3937_RS04195 0.22 +0.9
929,752 + DDA3937_RS04195 0.27 -0.1
929,753 - DDA3937_RS04195 0.27 -0.4
929,770 + DDA3937_RS04195 0.30 -0.9
929,770 + DDA3937_RS04195 0.30 +0.5
929,771 - DDA3937_RS04195 0.30 -0.2
929,771 - DDA3937_RS04195 0.30 -0.5
929,771 - DDA3937_RS04195 0.30 +0.6
929,774 - DDA3937_RS04195 0.30 -0.2
929,818 + DDA3937_RS04195 0.35 -1.6
929,856 + DDA3937_RS04195 0.40 -0.6
929,942 - DDA3937_RS04195 0.50 -0.8
929,954 - DDA3937_RS04195 0.51 +1.4
929,996 + DDA3937_RS04195 0.57 +0.1
929,996 + DDA3937_RS04195 0.57 -0.7
929,996 + DDA3937_RS04195 0.57 -1.7
929,997 - DDA3937_RS04195 0.57 -1.1
929,997 - DDA3937_RS04195 0.57 +0.7
930,009 - DDA3937_RS04195 0.58 -0.2
930,071 + DDA3937_RS04195 0.65 -0.7
930,071 + DDA3937_RS04195 0.65 -1.4
930,071 + DDA3937_RS04195 0.65 -0.1
930,211 + DDA3937_RS04195 0.82 +0.6
930,212 - DDA3937_RS04195 0.82 +0.2
930,300 - +0.2
930,300 - +0.4
930,303 - +0.6
930,333 - +0.5

Or see this region's nucleotide sequence