Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotides DDA3937_RS03845 and DDA3937_RS03850 are separated by 220 nucleotides
DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069
_RS03840
DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034
_RS03845
DDA3937_RS03850: DDA3937_RS03850 - NACHT domain-containing protein, at 853,255 to 858,222
_RS03850
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.362 kb on - strand, within DDA3937_RS03840 at 851.694 kb on - strand, within DDA3937_RS03840 at 852.060 kb on + strand at 852.063 kb on + strand at 852.071 kb on + strand at 852.071 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.119 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.128 kb on - strand at 852.130 kb on + strand at 852.231 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.238 kb on - strand at 852.245 kb on + strand at 852.245 kb on + strand at 852.246 kb on - strand at 852.258 kb on - strand at 852.259 kb on + strand at 852.259 kb on + strand at 852.260 kb on - strand at 852.281 kb on - strand at 852.285 kb on + strand at 852.286 kb on - strand at 852.308 kb on - strand at 852.321 kb on + strand at 852.402 kb on + strand at 852.402 kb on + strand at 852.403 kb on - strand at 852.403 kb on - strand at 852.427 kb on + strand, within DDA3937_RS03845 at 852.452 kb on + strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.522 kb on + strand, within DDA3937_RS03845 at 852.538 kb on - strand, within DDA3937_RS03845 at 852.590 kb on + strand, within DDA3937_RS03845 at 852.591 kb on - strand, within DDA3937_RS03845 at 852.622 kb on + strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.640 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.705 kb on + strand, within DDA3937_RS03845 at 852.774 kb on - strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.838 kb on - strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 853.004 kb on + strand at 853.005 kb on - strand at 853.163 kb on - strand at 853.333 kb on - strand at 853.379 kb on + strand at 853.380 kb on - strand at 853.389 kb on + strand at 853.389 kb on + strand at 853.479 kb on - strand at 853.494 kb on - strand at 853.590 kb on + strand at 853.890 kb on - strand, within DDA3937_RS03850 at 853.942 kb on - strand, within DDA3937_RS03850 at 853.952 kb on - strand, within DDA3937_RS03850 at 853.961 kb on + strand, within DDA3937_RS03850 at 854.018 kb on + strand, within DDA3937_RS03850 at 854.019 kb on - strand, within DDA3937_RS03850 at 854.028 kb on + strand, within DDA3937_RS03850 at 854.029 kb on - strand, within DDA3937_RS03850
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 851,362 - DDA3937_RS03840 0.36 +1.1 851,694 - DDA3937_RS03840 0.66 +0.2 852,060 + +0.5 852,063 + +0.8 852,071 + +0.2 852,071 + +1.9 852,080 + -0.3 852,080 + -0.0 852,080 + -0.4 852,119 + -0.7 852,127 + -0.3 852,127 + -0.3 852,127 + +0.1 852,128 - -0.3 852,130 + +1.3 852,231 + +1.2 852,237 + -1.4 852,237 + -1.2 852,237 + +0.6 852,238 - -0.7 852,245 + +0.3 852,245 + -0.4 852,246 - -2.7 852,258 - -0.3 852,259 + +0.2 852,259 + +0.3 852,260 - +0.2 852,281 - -0.1 852,285 + +0.1 852,286 - +0.1 852,308 - -0.1 852,321 + +0.1 852,402 + -0.4 852,402 + +0.2 852,403 - +0.1 852,403 - -0.4 852,427 + DDA3937_RS03845 0.11 -0.4 852,452 + DDA3937_RS03845 0.15 +0.7 852,453 - DDA3937_RS03845 0.15 -0.2 852,453 - DDA3937_RS03845 0.15 +0.6 852,453 - DDA3937_RS03845 0.15 +1.1 852,500 - DDA3937_RS03845 0.22 -0.4 852,500 - DDA3937_RS03845 0.22 +0.5 852,522 + DDA3937_RS03845 0.25 -1.1 852,538 - DDA3937_RS03845 0.27 -0.5 852,590 + DDA3937_RS03845 0.35 -0.5 852,591 - DDA3937_RS03845 0.35 -2.1 852,622 + DDA3937_RS03845 0.40 -0.0 852,623 - DDA3937_RS03845 0.40 +0.6 852,623 - DDA3937_RS03845 0.40 -0.5 852,623 - DDA3937_RS03845 0.40 +0.2 852,623 - DDA3937_RS03845 0.40 -0.3 852,640 + DDA3937_RS03845 0.42 +0.3 852,672 + DDA3937_RS03845 0.47 -0.1 852,672 + DDA3937_RS03845 0.47 +0.4 852,672 + DDA3937_RS03845 0.47 +0.0 852,705 + DDA3937_RS03845 0.52 -0.0 852,774 - DDA3937_RS03845 0.62 +0.6 852,837 + DDA3937_RS03845 0.71 -0.2 852,837 + DDA3937_RS03845 0.71 -0.5 852,837 + DDA3937_RS03845 0.71 -0.7 852,838 - DDA3937_RS03845 0.71 -1.1 852,912 + DDA3937_RS03845 0.82 +0.3 852,912 + DDA3937_RS03845 0.82 -0.5 852,913 - DDA3937_RS03845 0.82 +0.2 852,913 - DDA3937_RS03845 0.82 -1.1 852,941 + DDA3937_RS03845 0.86 -0.8 852,941 + DDA3937_RS03845 0.86 -2.3 852,941 + DDA3937_RS03845 0.86 -1.1 853,004 + -0.2 853,005 - -0.7 853,163 - +0.2 853,333 - -1.1 853,379 + -0.3 853,380 - +0.7 853,389 + -0.2 853,389 + -0.9 853,479 - +0.9 853,494 - -0.3 853,590 + -0.2 853,890 - DDA3937_RS03850 0.13 -0.1 853,942 - DDA3937_RS03850 0.14 -0.5 853,952 - DDA3937_RS03850 0.14 -1.5 853,961 + DDA3937_RS03850 0.14 -0.3 854,018 + DDA3937_RS03850 0.15 +0.4 854,019 - DDA3937_RS03850 0.15 -1.0 854,028 + DDA3937_RS03850 0.16 -1.1 854,029 - DDA3937_RS03850 0.16 +0.1
Or see this region's nucleotide sequence