Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03815 and DDA3937_RS03820 are separated by 93 nucleotides DDA3937_RS03820 and DDA3937_RS03825 are separated by 125 nucleotides DDA3937_RS03825 and DDA3937_RS03830 are separated by 32 nucleotides
DDA3937_RS03815: DDA3937_RS03815 - efflux RND transporter periplasmic adaptor subunit, at 845,555 to 846,670
_RS03815
DDA3937_RS03820: DDA3937_RS03820 - TetR/AcrR family transcriptional regulator, at 846,764 to 847,381
_RS03820
DDA3937_RS03825: DDA3937_RS03825 - efflux transporter outer membrane subunit, at 847,507 to 848,985
_RS03825
DDA3937_RS03830: DDA3937_RS03830 - MATE family efflux transporter, at 849,018 to 850,427
_RS03830
Position (kb) 847
848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 846.545 kb on + strand, within DDA3937_RS03815 at 846.546 kb on - strand, within DDA3937_RS03815 at 846.560 kb on + strand at 846.561 kb on - strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.693 kb on + strand at 846.693 kb on + strand at 846.694 kb on - strand at 846.694 kb on - strand at 846.765 kb on + strand at 846.765 kb on + strand at 846.766 kb on - strand at 846.766 kb on - strand at 846.786 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.405 kb on - strand at 847.405 kb on - strand at 847.405 kb on - strand at 847.426 kb on - strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.494 kb on - strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.507 kb on - strand at 847.511 kb on + strand at 847.579 kb on + strand at 847.579 kb on + strand at 847.580 kb on - strand at 847.613 kb on - strand at 847.700 kb on + strand, within DDA3937_RS03825 at 847.710 kb on + strand, within DDA3937_RS03825 at 847.710 kb on + strand, within DDA3937_RS03825 at 847.846 kb on + strand, within DDA3937_RS03825 at 847.846 kb on + strand, within DDA3937_RS03825 at 847.847 kb on - strand, within DDA3937_RS03825 at 847.877 kb on + strand, within DDA3937_RS03825 at 847.878 kb on - strand at 847.878 kb on - strand, within DDA3937_RS03825 at 847.878 kb on - strand, within DDA3937_RS03825 at 847.907 kb on - strand, within DDA3937_RS03825 at 847.911 kb on + strand, within DDA3937_RS03825 at 847.911 kb on + strand, within DDA3937_RS03825 at 847.919 kb on - strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.066 kb on - strand, within DDA3937_RS03825 at 848.066 kb on - strand, within DDA3937_RS03825 at 848.085 kb on - strand, within DDA3937_RS03825 at 848.117 kb on + strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.158 kb on + strand, within DDA3937_RS03825 at 848.158 kb on + strand, within DDA3937_RS03825 at 848.159 kb on - strand, within DDA3937_RS03825 at 848.442 kb on + strand, within DDA3937_RS03825 at 848.464 kb on + strand, within DDA3937_RS03825 at 848.464 kb on + strand, within DDA3937_RS03825 at 848.465 kb on - strand, within DDA3937_RS03825 at 848.532 kb on + strand, within DDA3937_RS03825 at 848.532 kb on + strand, within DDA3937_RS03825 at 848.533 kb on - strand, within DDA3937_RS03825 at 848.791 kb on + strand, within DDA3937_RS03825 at 848.792 kb on - strand, within DDA3937_RS03825 at 848.841 kb on + strand at 848.842 kb on - strand at 848.842 kb on - strand at 848.842 kb on - strand at 848.991 kb on - strand at 848.996 kb on + strand at 849.026 kb on + strand at 849.027 kb on - strand at 849.031 kb on + strand at 849.035 kb on - strand at 849.184 kb on - strand, within DDA3937_RS03830 at 849.184 kb on - strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.233 kb on - strand, within DDA3937_RS03830 at 849.289 kb on + strand, within DDA3937_RS03830 at 849.290 kb on - strand, within DDA3937_RS03830 at 849.349 kb on + strand, within DDA3937_RS03830 at 849.350 kb on - strand, within DDA3937_RS03830 at 849.362 kb on + strand, within DDA3937_RS03830 at 849.363 kb on - strand, within DDA3937_RS03830 at 849.365 kb on + strand, within DDA3937_RS03830 at 849.366 kb on - strand, within DDA3937_RS03830 at 849.366 kb on - strand, within DDA3937_RS03830 at 849.401 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.687 kb on + strand, within DDA3937_RS03830 at 849.687 kb on + strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.706 kb on + strand, within DDA3937_RS03830 at 849.706 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.741 kb on - strand, within DDA3937_RS03830 at 849.819 kb on - strand, within DDA3937_RS03830 at 849.918 kb on + strand, within DDA3937_RS03830 at 849.918 kb on + strand, within DDA3937_RS03830 at 849.919 kb on - strand, within DDA3937_RS03830 at 849.960 kb on - strand, within DDA3937_RS03830 at 849.980 kb on + strand, within DDA3937_RS03830
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 846,545 + DDA3937_RS03815 0.89 -0.5 846,546 - DDA3937_RS03815 0.89 -0.1 846,560 + +0.0 846,561 - +0.1 846,670 + -0.3 846,670 + -0.3 846,670 + +0.4 846,670 + -1.9 846,671 - -1.3 846,671 - +0.1 846,671 - +0.3 846,671 - +0.2 846,671 - +0.7 846,671 - -2.0 846,671 - -0.3 846,674 + -0.1 846,674 + -0.5 846,674 + -1.6 846,674 + -0.4 846,674 + -1.3 846,674 + -0.1 846,674 + +0.1 846,675 - -0.2 846,675 - +0.8 846,675 - -0.3 846,675 - +0.3 846,675 - +0.3 846,675 - -0.8 846,675 - +0.3 846,693 + +0.6 846,693 + -1.1 846,694 - -0.3 846,694 - +0.2 846,765 + -1.1 846,765 + +0.2 846,766 - +0.5 846,766 - -0.3 846,786 - +0.5 847,382 - -0.2 847,382 - +0.9 847,382 - +0.2 847,382 - -0.1 847,404 + -0.6 847,404 + -0.3 847,404 + +0.3 847,404 + +0.9 847,405 - -0.0 847,405 - -0.6 847,405 - -0.1 847,426 - -0.3 847,493 + +1.9 847,493 + +0.3 847,493 + +0.4 847,493 + +1.1 847,493 + -1.7 847,494 - +0.7 847,506 + -0.8 847,506 + -0.4 847,506 + -0.1 847,506 + +0.2 847,506 + +0.7 847,507 - -0.8 847,511 + -0.3 847,579 + +0.1 847,579 + -0.1 847,580 - +1.9 847,613 - +0.6 847,700 + DDA3937_RS03825 0.13 -0.7 847,710 + DDA3937_RS03825 0.14 -0.3 847,710 + DDA3937_RS03825 0.14 +0.4 847,846 + DDA3937_RS03825 0.23 -0.1 847,846 + DDA3937_RS03825 0.23 +0.7 847,847 - DDA3937_RS03825 0.23 -1.0 847,877 + DDA3937_RS03825 0.25 +1.8 847,878 - +0.9 847,878 - DDA3937_RS03825 0.25 +0.1 847,878 - DDA3937_RS03825 0.25 +0.4 847,907 - DDA3937_RS03825 0.27 +0.1 847,911 + DDA3937_RS03825 0.27 +0.4 847,911 + DDA3937_RS03825 0.27 -0.8 847,919 - DDA3937_RS03825 0.28 -0.2 848,065 + DDA3937_RS03825 0.38 -0.6 848,065 + DDA3937_RS03825 0.38 -1.1 848,065 + DDA3937_RS03825 0.38 +0.1 848,065 + DDA3937_RS03825 0.38 -0.1 848,065 + DDA3937_RS03825 0.38 +0.5 848,065 + DDA3937_RS03825 0.38 +0.2 848,065 + DDA3937_RS03825 0.38 +0.0 848,066 - DDA3937_RS03825 0.38 +0.2 848,066 - DDA3937_RS03825 0.38 -1.0 848,085 - DDA3937_RS03825 0.39 +1.1 848,117 + DDA3937_RS03825 0.41 +0.5 848,118 - DDA3937_RS03825 0.41 -0.3 848,118 - DDA3937_RS03825 0.41 -0.7 848,118 - DDA3937_RS03825 0.41 -0.2 848,158 + DDA3937_RS03825 0.44 -0.3 848,158 + DDA3937_RS03825 0.44 -0.3 848,159 - DDA3937_RS03825 0.44 +0.7 848,442 + DDA3937_RS03825 0.63 -0.2 848,464 + DDA3937_RS03825 0.65 -0.1 848,464 + DDA3937_RS03825 0.65 +0.6 848,465 - DDA3937_RS03825 0.65 -0.2 848,532 + DDA3937_RS03825 0.69 +0.7 848,532 + DDA3937_RS03825 0.69 -0.4 848,533 - DDA3937_RS03825 0.69 -1.5 848,791 + DDA3937_RS03825 0.87 +0.6 848,792 - DDA3937_RS03825 0.87 -0.7 848,841 + +0.9 848,842 - -0.3 848,842 - -1.4 848,842 - -2.4 848,991 - +0.0 848,996 + +0.2 849,026 + +0.1 849,027 - -1.0 849,031 + -2.0 849,035 - -0.5 849,184 - DDA3937_RS03830 0.12 +0.1 849,184 - DDA3937_RS03830 0.12 +0.1 849,211 + DDA3937_RS03830 0.14 -0.2 849,211 + DDA3937_RS03830 0.14 -0.1 849,211 + DDA3937_RS03830 0.14 -1.4 849,211 + DDA3937_RS03830 0.14 +0.4 849,211 + DDA3937_RS03830 0.14 -0.4 849,211 + DDA3937_RS03830 0.14 +0.0 849,211 + DDA3937_RS03830 0.14 +1.3 849,211 + DDA3937_RS03830 0.14 -0.5 849,211 + DDA3937_RS03830 0.14 -0.2 849,212 - DDA3937_RS03830 0.14 -0.5 849,212 - DDA3937_RS03830 0.14 -0.4 849,212 - DDA3937_RS03830 0.14 -1.1 849,212 - DDA3937_RS03830 0.14 +0.6 849,212 - DDA3937_RS03830 0.14 -0.5 849,212 - DDA3937_RS03830 0.14 +0.5 849,212 - DDA3937_RS03830 0.14 -2.7 849,212 - DDA3937_RS03830 0.14 +0.6 849,212 - DDA3937_RS03830 0.14 +0.1 849,212 - DDA3937_RS03830 0.14 -1.2 849,233 - DDA3937_RS03830 0.15 -0.2 849,289 + DDA3937_RS03830 0.19 -0.4 849,290 - DDA3937_RS03830 0.19 +0.1 849,349 + DDA3937_RS03830 0.23 -2.1 849,350 - DDA3937_RS03830 0.24 +0.2 849,362 + DDA3937_RS03830 0.24 -0.6 849,363 - DDA3937_RS03830 0.24 -0.2 849,365 + DDA3937_RS03830 0.25 -0.4 849,366 - DDA3937_RS03830 0.25 -0.4 849,366 - DDA3937_RS03830 0.25 +0.9 849,401 + DDA3937_RS03830 0.27 -0.7 849,684 + DDA3937_RS03830 0.47 -1.7 849,684 + DDA3937_RS03830 0.47 -0.1 849,684 + DDA3937_RS03830 0.47 -0.2 849,684 + DDA3937_RS03830 0.47 -0.8 849,684 + -0.3 849,684 + DDA3937_RS03830 0.47 +0.7 849,684 + DDA3937_RS03830 0.47 +0.1 849,684 + DDA3937_RS03830 0.47 -0.1 849,684 + DDA3937_RS03830 0.47 -0.3 849,684 + DDA3937_RS03830 0.47 +0.2 849,684 + -0.7 849,684 + DDA3937_RS03830 0.47 -0.2 849,684 + -1.3 849,685 - DDA3937_RS03830 0.47 -0.4 849,685 - DDA3937_RS03830 0.47 -0.3 849,685 - DDA3937_RS03830 0.47 +0.1 849,685 - DDA3937_RS03830 0.47 +1.3 849,685 - DDA3937_RS03830 0.47 -0.1 849,685 - DDA3937_RS03830 0.47 +0.2 849,685 - DDA3937_RS03830 0.47 -0.2 849,687 + DDA3937_RS03830 0.47 -0.4 849,687 + DDA3937_RS03830 0.47 +0.2 849,688 - DDA3937_RS03830 0.48 +0.9 849,688 - DDA3937_RS03830 0.48 -0.2 849,688 - DDA3937_RS03830 0.48 -0.2 849,688 - DDA3937_RS03830 0.48 -1.5 849,688 - DDA3937_RS03830 0.48 -0.1 849,688 - DDA3937_RS03830 0.48 -1.7 849,703 + DDA3937_RS03830 0.49 -1.0 849,703 + DDA3937_RS03830 0.49 +0.1 849,703 + DDA3937_RS03830 0.49 +0.0 849,704 - DDA3937_RS03830 0.49 +1.2 849,704 - DDA3937_RS03830 0.49 -0.4 849,704 - DDA3937_RS03830 0.49 +1.3 849,704 - DDA3937_RS03830 0.49 -0.1 849,706 + DDA3937_RS03830 0.49 -1.0 849,706 + DDA3937_RS03830 0.49 -0.3 849,719 + DDA3937_RS03830 0.50 -0.4 849,719 + DDA3937_RS03830 0.50 -0.8 849,719 + DDA3937_RS03830 0.50 +0.3 849,719 + DDA3937_RS03830 0.50 +0.2 849,741 - DDA3937_RS03830 0.51 +1.1 849,819 - DDA3937_RS03830 0.57 +0.6 849,918 + DDA3937_RS03830 0.64 -1.1 849,918 + DDA3937_RS03830 0.64 +0.6 849,919 - DDA3937_RS03830 0.64 -0.1 849,960 - DDA3937_RS03830 0.67 -0.1 849,980 + DDA3937_RS03830 0.68 -0.4
Or see this region's nucleotide sequence