Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02435

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02425 and DDA3937_RS02430 are separated by 129 nucleotidesDDA3937_RS02430 and DDA3937_RS02435 are separated by 14 nucleotidesDDA3937_RS02435 and DDA3937_RS02440 are separated by 150 nucleotides DDA3937_RS02425: DDA3937_RS02425 - phosphoserine phosphatase, at 537,113 to 538,090 _RS02425 DDA3937_RS02430: DDA3937_RS02430 - YtjB family periplasmic protein, at 538,220 to 538,900 _RS02430 DDA3937_RS02435: DDA3937_RS02435 - trans-aconitate 2-methyltransferase, at 538,915 to 539,691 _RS02435 DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714 _RS02440 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 537.939 kb on + strand, within DDA3937_RS02425at 537.940 kb on - strand, within DDA3937_RS02425at 537.940 kb on - strand, within DDA3937_RS02425at 537.960 kb on + strand, within DDA3937_RS02425at 537.961 kb on - strand, within DDA3937_RS02425at 538.003 kb on + strandat 538.004 kb on - strandat 538.070 kb on - strandat 538.070 kb on - strandat 538.071 kb on + strandat 538.072 kb on - strandat 538.072 kb on - strandat 538.072 kb on - strandat 538.072 kb on - strandat 538.072 kb on - strandat 538.072 kb on - strandat 538.095 kb on + strandat 538.096 kb on - strandat 538.096 kb on - strandat 538.099 kb on + strandat 538.099 kb on + strandat 538.099 kb on + strandat 538.099 kb on + strandat 538.099 kb on + strandat 538.100 kb on - strandat 538.100 kb on - strandat 538.100 kb on - strandat 538.162 kb on + strandat 538.162 kb on + strandat 538.162 kb on + strandat 538.163 kb on - strandat 538.163 kb on - strandat 538.163 kb on - strandat 538.163 kb on - strandat 538.168 kb on - strandat 538.197 kb on - strandat 538.213 kb on + strandat 538.213 kb on + strandat 538.214 kb on - strandat 538.214 kb on - strandat 538.214 kb on - strandat 538.214 kb on - strandat 538.248 kb on + strandat 538.248 kb on + strandat 538.248 kb on + strandat 538.248 kb on + strandat 538.249 kb on - strandat 538.249 kb on - strandat 538.249 kb on - strandat 538.255 kb on + strandat 538.256 kb on - strandat 538.313 kb on + strand, within DDA3937_RS02430at 538.313 kb on + strand, within DDA3937_RS02430at 538.314 kb on - strand, within DDA3937_RS02430at 538.369 kb on + strand, within DDA3937_RS02430at 538.370 kb on - strand, within DDA3937_RS02430at 538.472 kb on - strand, within DDA3937_RS02430at 538.477 kb on + strand, within DDA3937_RS02430at 538.477 kb on + strand, within DDA3937_RS02430at 538.478 kb on - strand, within DDA3937_RS02430at 538.494 kb on + strand, within DDA3937_RS02430at 538.495 kb on - strand, within DDA3937_RS02430at 538.495 kb on - strand, within DDA3937_RS02430at 538.495 kb on - strand, within DDA3937_RS02430at 538.496 kb on + strand, within DDA3937_RS02430at 538.496 kb on + strand, within DDA3937_RS02430at 538.496 kb on + strand, within DDA3937_RS02430at 538.497 kb on - strand, within DDA3937_RS02430at 538.586 kb on + strand, within DDA3937_RS02430at 538.586 kb on + strand, within DDA3937_RS02430at 538.586 kb on + strand, within DDA3937_RS02430at 538.586 kb on + strand, within DDA3937_RS02430at 538.586 kb on + strand, within DDA3937_RS02430at 538.586 kb on + strandat 538.587 kb on - strand, within DDA3937_RS02430at 538.621 kb on + strand, within DDA3937_RS02430at 538.651 kb on + strand, within DDA3937_RS02430at 538.651 kb on + strand, within DDA3937_RS02430at 538.652 kb on - strand, within DDA3937_RS02430at 538.652 kb on - strand, within DDA3937_RS02430at 538.652 kb on - strand, within DDA3937_RS02430at 538.750 kb on + strand, within DDA3937_RS02430at 538.751 kb on - strand, within DDA3937_RS02430at 538.805 kb on + strand, within DDA3937_RS02430at 538.805 kb on + strand, within DDA3937_RS02430at 538.806 kb on - strand, within DDA3937_RS02430at 538.806 kb on - strand, within DDA3937_RS02430at 538.806 kb on - strand, within DDA3937_RS02430at 538.806 kb on - strand, within DDA3937_RS02430at 538.806 kb on - strand, within DDA3937_RS02430at 539.013 kb on - strand, within DDA3937_RS02435at 539.123 kb on + strand, within DDA3937_RS02435at 539.123 kb on + strand, within DDA3937_RS02435at 539.123 kb on + strand, within DDA3937_RS02435at 539.123 kb on + strand, within DDA3937_RS02435at 539.124 kb on - strand, within DDA3937_RS02435at 539.124 kb on - strand, within DDA3937_RS02435at 539.124 kb on - strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.126 kb on + strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.127 kb on - strand, within DDA3937_RS02435at 539.142 kb on + strand, within DDA3937_RS02435at 539.177 kb on + strand, within DDA3937_RS02435at 539.177 kb on + strand, within DDA3937_RS02435at 539.177 kb on + strand, within DDA3937_RS02435at 539.178 kb on - strand, within DDA3937_RS02435at 539.178 kb on - strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.180 kb on + strand, within DDA3937_RS02435at 539.181 kb on - strand, within DDA3937_RS02435at 539.181 kb on - strand, within DDA3937_RS02435at 539.349 kb on + strand, within DDA3937_RS02435at 539.350 kb on - strand, within DDA3937_RS02435at 539.350 kb on - strand, within DDA3937_RS02435at 539.350 kb on - strand, within DDA3937_RS02435at 539.350 kb on - strand, within DDA3937_RS02435at 539.399 kb on + strand, within DDA3937_RS02435at 539.399 kb on + strand, within DDA3937_RS02435at 539.400 kb on - strand, within DDA3937_RS02435at 539.613 kb on + strand, within DDA3937_RS02435at 539.644 kb on - strandat 539.666 kb on + strandat 539.666 kb on + strandat 539.691 kb on + strandat 539.691 kb on + strandat 539.691 kb on + strandat 539.692 kb on - strandat 539.712 kb on - strandat 539.732 kb on + strandat 539.741 kb on + strandat 539.741 kb on + strandat 539.741 kb on + strandat 539.742 kb on - strandat 539.936 kb on + strand, within DDA3937_RS02440at 539.936 kb on + strand, within DDA3937_RS02440at 539.937 kb on - strand, within DDA3937_RS02440at 539.949 kb on + strand, within DDA3937_RS02440at 539.949 kb on + strand, within DDA3937_RS02440at 539.950 kb on - strand, within DDA3937_RS02440at 540.035 kb on + strand, within DDA3937_RS02440at 540.035 kb on + strandat 540.043 kb on + strand, within DDA3937_RS02440at 540.083 kb on - strand, within DDA3937_RS02440at 540.161 kb on + strand, within DDA3937_RS02440at 540.162 kb on - strand, within DDA3937_RS02440at 540.162 kb on - strand, within DDA3937_RS02440at 540.162 kb on - strand, within DDA3937_RS02440at 540.194 kb on + strand, within DDA3937_RS02440at 540.194 kb on + strand, within DDA3937_RS02440at 540.195 kb on - strand, within DDA3937_RS02440at 540.195 kb on - strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.209 kb on + strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.210 kb on - strand, within DDA3937_RS02440at 540.270 kb on + strand, within DDA3937_RS02440at 540.271 kb on - strand, within DDA3937_RS02440at 540.296 kb on + strand, within DDA3937_RS02440at 540.297 kb on - strand, within DDA3937_RS02440at 540.364 kb on - strand, within DDA3937_RS02440at 540.589 kb on + strand, within DDA3937_RS02440at 540.590 kb on - strand, within DDA3937_RS02440at 540.590 kb on - strand, within DDA3937_RS02440at 540.590 kb on - strand, within DDA3937_RS02440at 540.684 kb on + strandat 540.684 kb on + strandat 540.684 kb on + strandat 540.685 kb on - strandat 540.685 kb on - strandat 540.685 kb on - strandat 540.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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537,939 + DDA3937_RS02425 0.84 -2.0
537,940 - DDA3937_RS02425 0.85 +0.0
537,940 - DDA3937_RS02425 0.85 +0.0
537,960 + DDA3937_RS02425 0.87 -0.6
537,961 - DDA3937_RS02425 0.87 -1.1
538,003 + -0.6
538,004 - -0.3
538,070 - -0.2
538,070 - -0.4
538,071 + +1.0
538,072 - -0.8
538,072 - -0.2
538,072 - +0.7
538,072 - +1.0
538,072 - +0.1
538,072 - +0.8
538,095 + +0.0
538,096 - -0.9
538,096 - -0.1
538,099 + -1.0
538,099 + -0.3
538,099 + +1.0
538,099 + +1.5
538,099 + +0.3
538,100 - -0.6
538,100 - +0.7
538,100 - -0.7
538,162 + -0.6
538,162 + -0.6
538,162 + -0.3
538,163 - +0.1
538,163 - +0.5
538,163 - +0.9
538,163 - +0.0
538,168 - -0.3
538,197 - +1.0
538,213 + -0.3
538,213 + +1.0
538,214 - -0.1
538,214 - +1.0
538,214 - +0.3
538,214 - -0.1
538,248 + +0.4
538,248 + -0.8
538,248 + -1.2
538,248 + -0.6
538,249 - -0.1
538,249 - -1.0
538,249 - -1.1
538,255 + -1.4
538,256 - -0.4
538,313 + DDA3937_RS02430 0.14 +0.0
538,313 + DDA3937_RS02430 0.14 -0.1
538,314 - DDA3937_RS02430 0.14 +0.1
538,369 + DDA3937_RS02430 0.22 -0.6
538,370 - DDA3937_RS02430 0.22 -0.6
538,472 - DDA3937_RS02430 0.37 -0.8
538,477 + DDA3937_RS02430 0.38 +0.0
538,477 + DDA3937_RS02430 0.38 -0.3
538,478 - DDA3937_RS02430 0.38 +0.0
538,494 + DDA3937_RS02430 0.40 +0.0
538,495 - DDA3937_RS02430 0.40 +0.5
538,495 - DDA3937_RS02430 0.40 -0.1
538,495 - DDA3937_RS02430 0.40 -0.5
538,496 + DDA3937_RS02430 0.41 -0.4
538,496 + DDA3937_RS02430 0.41 -1.3
538,496 + DDA3937_RS02430 0.41 +0.2
538,497 - DDA3937_RS02430 0.41 -0.6
538,586 + DDA3937_RS02430 0.54 -1.7
538,586 + DDA3937_RS02430 0.54 -2.1
538,586 + DDA3937_RS02430 0.54 +0.3
538,586 + DDA3937_RS02430 0.54 +1.0
538,586 + DDA3937_RS02430 0.54 -1.6
538,586 + -2.1
538,587 - DDA3937_RS02430 0.54 +0.8
538,621 + DDA3937_RS02430 0.59 +0.0
538,651 + DDA3937_RS02430 0.63 +0.1
538,651 + DDA3937_RS02430 0.63 +0.4
538,652 - DDA3937_RS02430 0.63 +0.1
538,652 - DDA3937_RS02430 0.63 -0.1
538,652 - DDA3937_RS02430 0.63 +1.0
538,750 + DDA3937_RS02430 0.78 -1.0
538,751 - DDA3937_RS02430 0.78 -0.4
538,805 + DDA3937_RS02430 0.86 -0.9
538,805 + DDA3937_RS02430 0.86 +0.4
538,806 - DDA3937_RS02430 0.86 -0.6
538,806 - DDA3937_RS02430 0.86 +1.0
538,806 - DDA3937_RS02430 0.86 -0.5
538,806 - DDA3937_RS02430 0.86 -1.5
538,806 - DDA3937_RS02430 0.86 +0.7
539,013 - DDA3937_RS02435 0.13 +0.0
539,123 + DDA3937_RS02435 0.27 -0.2
539,123 + DDA3937_RS02435 0.27 -0.6
539,123 + DDA3937_RS02435 0.27 -0.4
539,123 + DDA3937_RS02435 0.27 +0.8
539,124 - DDA3937_RS02435 0.27 -0.3
539,124 - DDA3937_RS02435 0.27 +0.4
539,124 - DDA3937_RS02435 0.27 -0.6
539,126 + DDA3937_RS02435 0.27 -0.1
539,126 + DDA3937_RS02435 0.27 +0.1
539,126 + DDA3937_RS02435 0.27 +0.0
539,126 + DDA3937_RS02435 0.27 -2.0
539,126 + DDA3937_RS02435 0.27 -0.9
539,126 + DDA3937_RS02435 0.27 -0.1
539,126 + DDA3937_RS02435 0.27 -0.6
539,126 + DDA3937_RS02435 0.27 -0.7
539,126 + DDA3937_RS02435 0.27 +0.0
539,127 - DDA3937_RS02435 0.27 +0.3
539,127 - DDA3937_RS02435 0.27 -0.9
539,127 - DDA3937_RS02435 0.27 -3.4
539,127 - DDA3937_RS02435 0.27 -0.4
539,127 - DDA3937_RS02435 0.27 +0.3
539,127 - DDA3937_RS02435 0.27 +0.2
539,127 - DDA3937_RS02435 0.27 -1.2
539,142 + DDA3937_RS02435 0.29 -0.5
539,177 + DDA3937_RS02435 0.34 -2.0
539,177 + DDA3937_RS02435 0.34 +0.3
539,177 + DDA3937_RS02435 0.34 -1.3
539,178 - DDA3937_RS02435 0.34 +0.0
539,178 - DDA3937_RS02435 0.34 +0.2
539,180 + DDA3937_RS02435 0.34 -1.4
539,180 + DDA3937_RS02435 0.34 -1.6
539,180 + DDA3937_RS02435 0.34 +0.0
539,180 + DDA3937_RS02435 0.34 -1.0
539,180 + DDA3937_RS02435 0.34 -0.7
539,180 + DDA3937_RS02435 0.34 +1.0
539,181 - DDA3937_RS02435 0.34 +0.4
539,181 - DDA3937_RS02435 0.34 -0.8
539,349 + DDA3937_RS02435 0.56 -1.0
539,350 - DDA3937_RS02435 0.56 -1.1
539,350 - DDA3937_RS02435 0.56 +0.1
539,350 - DDA3937_RS02435 0.56 +0.4
539,350 - DDA3937_RS02435 0.56 -0.5
539,399 + DDA3937_RS02435 0.62 +0.1
539,399 + DDA3937_RS02435 0.62 -0.0
539,400 - DDA3937_RS02435 0.62 +0.1
539,613 + DDA3937_RS02435 0.90 -0.2
539,644 - +0.8
539,666 + +1.3
539,666 + +0.0
539,691 + -0.4
539,691 + +0.2
539,691 + -0.5
539,692 - -0.3
539,712 - -1.6
539,732 + -0.9
539,741 + +0.4
539,741 + +0.3
539,741 + -0.3
539,742 - +0.3
539,936 + DDA3937_RS02440 0.11 +0.7
539,936 + DDA3937_RS02440 0.11 +0.8
539,937 - DDA3937_RS02440 0.11 -0.3
539,949 + DDA3937_RS02440 0.12 +0.0
539,949 + DDA3937_RS02440 0.12 +0.2
539,950 - DDA3937_RS02440 0.12 +1.0
540,035 + DDA3937_RS02440 0.22 +2.3
540,035 + -1.6
540,043 + DDA3937_RS02440 0.23 +0.3
540,083 - DDA3937_RS02440 0.28 +0.4
540,161 + DDA3937_RS02440 0.37 -0.1
540,162 - DDA3937_RS02440 0.37 +0.1
540,162 - DDA3937_RS02440 0.37 -0.2
540,162 - DDA3937_RS02440 0.37 +0.3
540,194 + DDA3937_RS02440 0.40 -0.1
540,194 + DDA3937_RS02440 0.40 -0.8
540,195 - DDA3937_RS02440 0.40 -1.3
540,195 - DDA3937_RS02440 0.40 +0.2
540,209 + DDA3937_RS02440 0.42 +0.0
540,209 + DDA3937_RS02440 0.42 -0.1
540,209 + DDA3937_RS02440 0.42 +0.0
540,209 + DDA3937_RS02440 0.42 -0.8
540,209 + DDA3937_RS02440 0.42 -1.0
540,209 + DDA3937_RS02440 0.42 -0.2
540,209 + DDA3937_RS02440 0.42 +0.5
540,210 - DDA3937_RS02440 0.42 +0.0
540,210 - DDA3937_RS02440 0.42 +0.9
540,210 - DDA3937_RS02440 0.42 +0.0
540,210 - DDA3937_RS02440 0.42 +0.4
540,210 - DDA3937_RS02440 0.42 +1.6
540,210 - DDA3937_RS02440 0.42 -0.6
540,210 - DDA3937_RS02440 0.42 -0.3
540,210 - DDA3937_RS02440 0.42 +0.5
540,210 - DDA3937_RS02440 0.42 -0.8
540,270 + DDA3937_RS02440 0.49 +0.7
540,271 - DDA3937_RS02440 0.49 +0.3
540,296 + DDA3937_RS02440 0.52 -0.0
540,297 - DDA3937_RS02440 0.52 -0.2
540,364 - DDA3937_RS02440 0.60 +0.3
540,589 + DDA3937_RS02440 0.86 -0.6
540,590 - DDA3937_RS02440 0.86 -0.3
540,590 - DDA3937_RS02440 0.86 -0.1
540,590 - DDA3937_RS02440 0.86 +0.0
540,684 + +0.1
540,684 + +0.2
540,684 + -0.2
540,685 - -0.3
540,685 - +0.9
540,685 - -0.5
540,685 - -0.6

Or see this region's nucleotide sequence