Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00770 and DDA3937_RS00775 are separated by 236 nucleotides DDA3937_RS00775 and DDA3937_RS00780 are separated by 16 nucleotides DDA3937_RS00780 and DDA3937_RS00785 are separated by 210 nucleotides
DDA3937_RS00770: DDA3937_RS00770 - hypothetical protein, at 179,712 to 181,913
_RS00770
DDA3937_RS00775: DDA3937_RS00775 - envelope stress sensor histidine kinase CpxA, at 182,150 to 183,523
_RS00775
DDA3937_RS00780: DDA3937_RS00780 - envelope stress response regulator transcription factor CpxR, at 183,540 to 184,238
_RS00780
DDA3937_RS00785: DDA3937_RS00785 - cell-envelope stress modulator CpxP, at 184,449 to 185,009
_RS00785
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.160 kb on - strand, within DDA3937_RS00770 at 181.160 kb on - strand, within DDA3937_RS00770 at 181.353 kb on + strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.374 kb on + strand, within DDA3937_RS00770 at 181.375 kb on - strand, within DDA3937_RS00770 at 181.632 kb on - strand, within DDA3937_RS00770 at 181.632 kb on - strand, within DDA3937_RS00770 at 181.730 kb on + strand at 181.731 kb on - strand at 181.736 kb on + strand at 181.737 kb on - strand at 181.763 kb on + strand at 181.792 kb on + strand at 181.837 kb on - strand at 181.855 kb on + strand at 181.855 kb on + strand at 181.855 kb on + strand at 181.856 kb on - strand at 181.869 kb on + strand at 181.896 kb on + strand at 181.896 kb on + strand at 181.902 kb on + strand at 181.903 kb on - strand at 181.954 kb on + strand at 181.954 kb on + strand at 182.070 kb on - strand at 182.151 kb on + strand at 182.163 kb on + strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.600 kb on + strand at 182.600 kb on + strand, within DDA3937_RS00775 at 182.774 kb on + strand, within DDA3937_RS00775 at 182.774 kb on + strand at 182.774 kb on + strand, within DDA3937_RS00775 at 183.055 kb on + strand, within DDA3937_RS00775 at 183.056 kb on - strand, within DDA3937_RS00775 at 183.056 kb on - strand at 183.093 kb on + strand, within DDA3937_RS00775 at 183.094 kb on - strand at 183.103 kb on - strand, within DDA3937_RS00775 at 183.205 kb on + strand, within DDA3937_RS00775 at 183.242 kb on + strand, within DDA3937_RS00775 at 183.523 kb on + strand at 183.524 kb on - strand at 183.638 kb on + strand, within DDA3937_RS00780 at 184.008 kb on - strand, within DDA3937_RS00780 at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.265 kb on - strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.295 kb on + strand at 184.299 kb on + strand at 184.339 kb on + strand at 184.340 kb on - strand at 184.344 kb on + strand at 184.399 kb on + strand at 184.399 kb on + strand at 184.400 kb on - strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.420 kb on + strand at 184.420 kb on + strand at 184.421 kb on - strand at 184.421 kb on - strand at 184.425 kb on + strand at 184.425 kb on + strand at 184.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 181,157 + DDA3937_RS00770 0.66 -1.1 181,157 + DDA3937_RS00770 0.66 -0.6 181,157 + DDA3937_RS00770 0.66 -0.6 181,157 + DDA3937_RS00770 0.66 +0.7 181,157 + DDA3937_RS00770 0.66 -0.1 181,157 + DDA3937_RS00770 0.66 -0.3 181,157 + DDA3937_RS00770 0.66 -1.1 181,157 + DDA3937_RS00770 0.66 +0.2 181,158 - DDA3937_RS00770 0.66 -0.4 181,158 - DDA3937_RS00770 0.66 +0.0 181,158 - DDA3937_RS00770 0.66 -0.2 181,158 - DDA3937_RS00770 0.66 +0.3 181,158 - DDA3937_RS00770 0.66 +0.5 181,158 - DDA3937_RS00770 0.66 -0.8 181,158 - DDA3937_RS00770 0.66 -0.4 181,158 - DDA3937_RS00770 0.66 -0.4 181,158 - DDA3937_RS00770 0.66 -0.5 181,159 + DDA3937_RS00770 0.66 -0.8 181,159 + DDA3937_RS00770 0.66 -2.6 181,159 + DDA3937_RS00770 0.66 -1.7 181,160 - DDA3937_RS00770 0.66 -0.0 181,160 - DDA3937_RS00770 0.66 +0.2 181,353 + DDA3937_RS00770 0.75 -1.2 181,354 - DDA3937_RS00770 0.75 -0.1 181,354 - DDA3937_RS00770 0.75 +2.0 181,354 - DDA3937_RS00770 0.75 +0.6 181,374 + DDA3937_RS00770 0.75 +0.2 181,375 - DDA3937_RS00770 0.76 +0.2 181,632 - DDA3937_RS00770 0.87 +0.4 181,632 - DDA3937_RS00770 0.87 -0.1 181,730 + +0.1 181,731 - -1.5 181,736 + +0.3 181,737 - -0.4 181,763 + +0.3 181,792 + -0.3 181,837 - +0.8 181,855 + +0.2 181,855 + +0.7 181,855 + -0.4 181,856 - -0.1 181,869 + -0.2 181,896 + +0.3 181,896 + +0.1 181,902 + -1.3 181,903 - -0.5 181,954 + +0.2 181,954 + +0.1 182,070 - -1.3 182,151 + -0.1 182,163 + -0.6 182,164 - +0.5 182,164 - +0.0 182,164 - -0.0 182,164 - +1.2 182,600 + -0.1 182,600 + DDA3937_RS00775 0.33 -0.1 182,774 + DDA3937_RS00775 0.45 -1.2 182,774 + -0.8 182,774 + DDA3937_RS00775 0.45 -1.5 183,055 + DDA3937_RS00775 0.66 -3.1 183,056 - DDA3937_RS00775 0.66 -3.5 183,056 - +0.2 183,093 + DDA3937_RS00775 0.69 +0.9 183,094 - -1.6 183,103 - DDA3937_RS00775 0.69 +0.4 183,205 + DDA3937_RS00775 0.77 +1.5 183,242 + DDA3937_RS00775 0.79 -1.6 183,523 + -0.2 183,524 - -0.9 183,638 + DDA3937_RS00780 0.14 -0.2 184,008 - DDA3937_RS00780 0.67 +0.8 184,248 - -0.1 184,248 - -1.0 184,248 - +0.0 184,248 - +0.3 184,265 - +0.2 184,271 + +1.0 184,271 + -0.0 184,271 + -0.4 184,272 - +0.4 184,272 - +1.9 184,272 - -0.1 184,272 - +0.4 184,272 - +0.7 184,272 - -1.1 184,272 - +0.6 184,272 - -1.3 184,295 + -0.4 184,299 + +1.2 184,339 + -1.4 184,340 - +1.5 184,344 + -0.3 184,399 + -0.5 184,399 + +0.8 184,400 - -1.6 184,412 + +0.3 184,412 + +1.2 184,412 + +1.2 184,412 + +1.2 184,420 + -0.2 184,420 + -1.3 184,421 - +0.2 184,421 - +0.3 184,425 + +0.2 184,425 + -0.6 184,425 + -0.1
Or see this region's nucleotide sequence