Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00675 and DDA3937_RS00680 are separated by 6 nucleotides DDA3937_RS00680 and DDA3937_RS00685 are separated by 70 nucleotides DDA3937_RS00685 and DDA3937_RS00690 are separated by 130 nucleotides
DDA3937_RS00675: DDA3937_RS00675 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 155,467 to 156,237
_RS00675
DDA3937_RS00680: DDA3937_RS00680 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 156,244 to 156,945
_RS00680
DDA3937_RS00685: DDA3937_RS00685 - PLP-dependent aminotransferase family protein, at 157,016 to 158,200
_RS00685
DDA3937_RS00690: DDA3937_RS00690 - MCP four helix bundle domain-containing protein, at 158,331 to 159,968
_RS00690
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1
2 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.195 kb on + strand at 156.195 kb on + strand at 156.220 kb on + strand at 156.221 kb on - strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.275 kb on - strand at 156.312 kb on + strand at 156.592 kb on + strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.614 kb on - strand, within DDA3937_RS00680 at 156.853 kb on + strand, within DDA3937_RS00680 at 156.854 kb on - strand, within DDA3937_RS00680 at 156.905 kb on + strand at 156.983 kb on - strand at 157.046 kb on - strand at 157.252 kb on + strand, within DDA3937_RS00685 at 157.369 kb on + strand, within DDA3937_RS00685 at 157.380 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.407 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.521 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.852 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.865 kb on + strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 158.036 kb on - strand, within DDA3937_RS00685 at 158.251 kb on + strand at 158.251 kb on + strand at 158.367 kb on + strand at 158.549 kb on + strand, within DDA3937_RS00690 at 158.549 kb on + strand, within DDA3937_RS00690 at 158.592 kb on + strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.719 kb on - strand, within DDA3937_RS00690 at 158.877 kb on - strand, within DDA3937_RS00690 at 159.015 kb on - strand, within DDA3937_RS00690
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 156,142 + DDA3937_RS00675 0.88 +0.1 156,142 + DDA3937_RS00675 0.88 -1.1 156,142 + DDA3937_RS00675 0.88 -0.6 156,150 - DDA3937_RS00675 0.89 +0.8 156,150 - DDA3937_RS00675 0.89 -0.1 156,150 - DDA3937_RS00675 0.89 -0.2 156,150 - DDA3937_RS00675 0.89 -0.3 156,195 + -0.8 156,195 + -0.2 156,220 + +0.7 156,221 - -0.2 156,243 + -0.1 156,243 + -0.3 156,243 + -0.7 156,243 + -0.3 156,243 + -0.5 156,243 + +1.6 156,243 + -1.1 156,244 - -0.8 156,244 - +0.7 156,244 - -0.6 156,244 - +0.7 156,275 - -1.5 156,312 + -0.4 156,592 + DDA3937_RS00680 0.50 -0.1 156,593 - DDA3937_RS00680 0.50 -0.5 156,593 - DDA3937_RS00680 0.50 +0.0 156,593 - DDA3937_RS00680 0.50 -0.6 156,613 + DDA3937_RS00680 0.53 +0.7 156,613 + DDA3937_RS00680 0.53 +0.2 156,613 + DDA3937_RS00680 0.53 -1.0 156,613 + DDA3937_RS00680 0.53 -0.1 156,614 - DDA3937_RS00680 0.53 +0.9 156,853 + DDA3937_RS00680 0.87 +0.1 156,854 - DDA3937_RS00680 0.87 +0.2 156,905 + -0.9 156,983 - -1.1 157,046 - -0.8 157,252 + DDA3937_RS00685 0.20 +0.4 157,369 + DDA3937_RS00685 0.30 +0.8 157,380 + DDA3937_RS00685 0.31 +0.1 157,394 + DDA3937_RS00685 0.32 -0.1 157,394 + DDA3937_RS00685 0.32 -1.0 157,395 - DDA3937_RS00685 0.32 -0.0 157,395 - DDA3937_RS00685 0.32 +0.3 157,395 - DDA3937_RS00685 0.32 +0.5 157,407 + DDA3937_RS00685 0.33 +0.7 157,437 + DDA3937_RS00685 0.36 -0.3 157,437 + DDA3937_RS00685 0.36 -0.0 157,438 - DDA3937_RS00685 0.36 +0.2 157,438 - DDA3937_RS00685 0.36 -0.4 157,521 - DDA3937_RS00685 0.43 -0.8 157,719 - DDA3937_RS00685 0.59 -0.3 157,719 - DDA3937_RS00685 0.59 +1.4 157,719 - DDA3937_RS00685 0.59 -0.6 157,719 - DDA3937_RS00685 0.59 +0.6 157,719 - DDA3937_RS00685 0.59 -0.1 157,719 - DDA3937_RS00685 0.59 -1.1 157,719 - DDA3937_RS00685 0.59 +0.1 157,720 + DDA3937_RS00685 0.59 -0.2 157,720 + DDA3937_RS00685 0.59 +1.8 157,720 + DDA3937_RS00685 0.59 +0.8 157,721 - DDA3937_RS00685 0.59 +0.2 157,721 - DDA3937_RS00685 0.59 +0.1 157,721 - DDA3937_RS00685 0.59 -1.1 157,721 - DDA3937_RS00685 0.59 +0.6 157,721 - DDA3937_RS00685 0.59 +0.2 157,721 - DDA3937_RS00685 0.59 +0.8 157,721 - DDA3937_RS00685 0.59 -0.4 157,721 - DDA3937_RS00685 0.59 +0.1 157,721 - DDA3937_RS00685 0.59 +0.8 157,796 - DDA3937_RS00685 0.66 +0.5 157,796 - DDA3937_RS00685 0.66 -0.0 157,852 + DDA3937_RS00685 0.71 +2.2 157,862 + DDA3937_RS00685 0.71 +1.2 157,862 + DDA3937_RS00685 0.71 -0.9 157,863 - DDA3937_RS00685 0.71 +0.5 157,863 - DDA3937_RS00685 0.71 -0.3 157,863 - DDA3937_RS00685 0.71 -0.3 157,865 + DDA3937_RS00685 0.72 -0.1 157,866 - DDA3937_RS00685 0.72 -0.5 157,866 - DDA3937_RS00685 0.72 -0.3 157,866 - DDA3937_RS00685 0.72 -0.5 158,036 - DDA3937_RS00685 0.86 -0.3 158,251 + -0.8 158,251 + -0.1 158,367 + -0.8 158,549 + DDA3937_RS00690 0.13 -0.4 158,549 + DDA3937_RS00690 0.13 -0.4 158,592 + DDA3937_RS00690 0.16 +0.9 158,593 - DDA3937_RS00690 0.16 -0.3 158,593 - DDA3937_RS00690 0.16 -0.2 158,593 - DDA3937_RS00690 0.16 +0.4 158,719 - DDA3937_RS00690 0.24 +0.1 158,877 - DDA3937_RS00690 0.33 +0.6 159,015 - DDA3937_RS00690 0.42 +0.5
Or see this region's nucleotide sequence