Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21885

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03935 and DDA3937_RS21885 overlap by 8 nucleotidesDDA3937_RS21885 and DDA3937_RS03945 are separated by 100 nucleotidesDDA3937_RS03945 and DDA3937_RS03950 overlap by 1 nucleotides DDA3937_RS03935: DDA3937_RS03935 - hypothetical protein, at 878,544 to 879,647 _RS03935 DDA3937_RS21885: DDA3937_RS21885 - hypothetical protein, at 879,640 to 880,596 _RS21885 DDA3937_RS03945: DDA3937_RS03945 - DNA sulfur modification protein DndE, at 880,697 to 881,050 _RS03945 DDA3937_RS03950: DDA3937_RS03950 - DNA sulfur modification protein DndD, at 881,050 to 883,059 _RS03950 Position (kb) 879 880 881Strain fitness (log2 ratio) -2 -1 0 1at 878.682 kb on - strand, within DDA3937_RS03935at 878.702 kb on + strand, within DDA3937_RS03935at 878.775 kb on - strand, within DDA3937_RS03935at 878.800 kb on + strand, within DDA3937_RS03935at 878.801 kb on - strand, within DDA3937_RS03935at 878.816 kb on - strand, within DDA3937_RS03935at 878.828 kb on + strand, within DDA3937_RS03935at 878.829 kb on - strand, within DDA3937_RS03935at 878.833 kb on + strand, within DDA3937_RS03935at 878.834 kb on - strand, within DDA3937_RS03935at 878.837 kb on + strand, within DDA3937_RS03935at 878.838 kb on - strand, within DDA3937_RS03935at 879.346 kb on + strand, within DDA3937_RS03935at 879.444 kb on + strand, within DDA3937_RS03935at 879.445 kb on - strand, within DDA3937_RS03935at 879.487 kb on + strand, within DDA3937_RS03935at 879.493 kb on + strand, within DDA3937_RS03935at 879.493 kb on + strand, within DDA3937_RS03935at 879.527 kb on + strand, within DDA3937_RS03935at 879.683 kb on + strandat 879.756 kb on - strand, within DDA3937_RS21885at 879.767 kb on - strand, within DDA3937_RS21885at 879.787 kb on - strand, within DDA3937_RS21885at 879.789 kb on + strand, within DDA3937_RS21885at 879.917 kb on - strand, within DDA3937_RS21885at 879.975 kb on - strand, within DDA3937_RS21885at 880.140 kb on + strand, within DDA3937_RS21885at 880.141 kb on - strand, within DDA3937_RS21885at 880.154 kb on - strand, within DDA3937_RS21885at 880.201 kb on - strand, within DDA3937_RS21885at 880.242 kb on + strand, within DDA3937_RS21885at 880.243 kb on - strand, within DDA3937_RS21885at 880.369 kb on - strand, within DDA3937_RS21885at 880.543 kb on - strandat 880.732 kb on - strandat 880.897 kb on + strand, within DDA3937_RS03945at 880.897 kb on + strandat 880.897 kb on + strand, within DDA3937_RS03945at 880.898 kb on - strand, within DDA3937_RS03945at 880.985 kb on - strand, within DDA3937_RS03945at 880.987 kb on - strand, within DDA3937_RS03945at 880.994 kb on + strand, within DDA3937_RS03945at 881.002 kb on + strand, within DDA3937_RS03945at 881.002 kb on + strand, within DDA3937_RS03945at 881.027 kb on - strandat 881.065 kb on - strandat 881.069 kb on - strandat 881.098 kb on - strandat 881.143 kb on + strandat 881.145 kb on + strandat 881.145 kb on + strandat 881.145 kb on + strandat 881.145 kb on + strandat 881.145 kb on + strandat 881.146 kb on - strandat 881.146 kb on - strandat 881.171 kb on + strandat 881.183 kb on - strandat 881.183 kb on - strandat 881.234 kb on + strandat 881.250 kb on + strandat 881.351 kb on + strand, within DDA3937_RS03950at 881.389 kb on - strand, within DDA3937_RS03950at 881.441 kb on - strandat 881.459 kb on - strand, within DDA3937_RS03950at 881.502 kb on + strand, within DDA3937_RS03950at 881.549 kb on + strand, within DDA3937_RS03950at 881.550 kb on - strand, within DDA3937_RS03950at 881.584 kb on - strand, within DDA3937_RS03950at 881.596 kb on - strand, within DDA3937_RS03950at 881.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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878,682 - DDA3937_RS03935 0.12 +0.5
878,702 + DDA3937_RS03935 0.14 -0.7
878,775 - DDA3937_RS03935 0.21 +0.4
878,800 + DDA3937_RS03935 0.23 +0.3
878,801 - DDA3937_RS03935 0.23 +0.5
878,816 - DDA3937_RS03935 0.25 +0.6
878,828 + DDA3937_RS03935 0.26 -0.2
878,829 - DDA3937_RS03935 0.26 +0.4
878,833 + DDA3937_RS03935 0.26 +0.8
878,834 - DDA3937_RS03935 0.26 -0.3
878,837 + DDA3937_RS03935 0.27 -0.5
878,838 - DDA3937_RS03935 0.27 +0.1
879,346 + DDA3937_RS03935 0.73 -0.7
879,444 + DDA3937_RS03935 0.82 -1.3
879,445 - DDA3937_RS03935 0.82 +0.3
879,487 + DDA3937_RS03935 0.85 +0.3
879,493 + DDA3937_RS03935 0.86 -0.5
879,493 + DDA3937_RS03935 0.86 -0.6
879,527 + DDA3937_RS03935 0.89 -0.7
879,683 + +0.4
879,756 - DDA3937_RS21885 0.12 -0.5
879,767 - DDA3937_RS21885 0.13 +1.6
879,787 - DDA3937_RS21885 0.15 -0.5
879,789 + DDA3937_RS21885 0.16 -0.0
879,917 - DDA3937_RS21885 0.29 -0.2
879,975 - DDA3937_RS21885 0.35 +0.8
880,140 + DDA3937_RS21885 0.52 -1.1
880,141 - DDA3937_RS21885 0.52 +0.0
880,154 - DDA3937_RS21885 0.54 +1.3
880,201 - DDA3937_RS21885 0.59 -0.3
880,242 + DDA3937_RS21885 0.63 -0.4
880,243 - DDA3937_RS21885 0.63 -1.7
880,369 - DDA3937_RS21885 0.76 -0.3
880,543 - +0.8
880,732 - -1.6
880,897 + DDA3937_RS03945 0.56 +0.2
880,897 + +0.6
880,897 + DDA3937_RS03945 0.56 -0.1
880,898 - DDA3937_RS03945 0.57 +1.4
880,985 - DDA3937_RS03945 0.81 +0.7
880,987 - DDA3937_RS03945 0.82 +0.3
880,994 + DDA3937_RS03945 0.84 -1.3
881,002 + DDA3937_RS03945 0.86 +0.8
881,002 + DDA3937_RS03945 0.86 -0.2
881,027 - +0.8
881,065 - -0.5
881,069 - +1.7
881,098 - +0.6
881,143 + -0.4
881,145 + -2.5
881,145 + +0.6
881,145 + +0.4
881,145 + +0.1
881,145 + -0.6
881,146 - -0.8
881,146 - -1.6
881,171 + -1.2
881,183 - -1.0
881,183 - +0.0
881,234 + -0.7
881,250 + -0.0
881,351 + DDA3937_RS03950 0.15 -0.7
881,389 - DDA3937_RS03950 0.17 -0.0
881,441 - +1.5
881,459 - DDA3937_RS03950 0.20 -1.7
881,502 + DDA3937_RS03950 0.22 -0.9
881,549 + DDA3937_RS03950 0.25 +0.7
881,550 - DDA3937_RS03950 0.25 -1.2
881,584 - DDA3937_RS03950 0.27 -0.6
881,596 - DDA3937_RS03950 0.27 -0.3
881,596 - +0.6

Or see this region's nucleotide sequence