Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20945 and DDA3937_RS20950 are separated by 361 nucleotides DDA3937_RS20950 and DDA3937_RS20955 are separated by 336 nucleotides
DDA3937_RS20945: DDA3937_RS20945 - IS110 family transposase, at 4,762,050 to 4,763,039
_RS20945
DDA3937_RS20950: DDA3937_RS20950 - aldehyde dehydrogenase, at 4,763,401 to 4,764,939
_RS20950
DDA3937_RS20955: DDA3937_RS20955 - formate dehydrogenase accessory sulfurtransferase FdhD, at 4,765,276 to 4,766,130
_RS20955
Position (kb) 4763
4764
4765 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4763.168 kb on + strand at 4763.207 kb on - strand at 4763.340 kb on + strand at 4763.340 kb on + strand at 4763.340 kb on + strand at 4763.342 kb on + strand at 4763.342 kb on + strand at 4763.342 kb on + strand at 4763.383 kb on + strand at 4763.429 kb on + strand at 4763.429 kb on + strand at 4763.430 kb on - strand at 4763.459 kb on + strand at 4763.546 kb on + strand at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.771 kb on + strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.772 kb on - strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.774 kb on + strand, within DDA3937_RS20950 at 4763.775 kb on - strand, within DDA3937_RS20950 at 4763.858 kb on + strand, within DDA3937_RS20950 at 4763.858 kb on + strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.859 kb on - strand, within DDA3937_RS20950 at 4763.890 kb on + strand, within DDA3937_RS20950 at 4763.981 kb on + strand, within DDA3937_RS20950 at 4763.982 kb on - strand, within DDA3937_RS20950 at 4764.036 kb on + strand, within DDA3937_RS20950 at 4764.115 kb on - strand, within DDA3937_RS20950 at 4764.115 kb on - strand, within DDA3937_RS20950 at 4764.219 kb on + strand, within DDA3937_RS20950 at 4764.220 kb on - strand, within DDA3937_RS20950 at 4764.225 kb on + strand, within DDA3937_RS20950 at 4764.245 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.375 kb on + strand, within DDA3937_RS20950 at 4764.476 kb on + strand, within DDA3937_RS20950 at 4764.476 kb on + strand, within DDA3937_RS20950 at 4764.528 kb on + strand, within DDA3937_RS20950 at 4764.529 kb on - strand, within DDA3937_RS20950 at 4764.815 kb on + strand at 4764.815 kb on + strand at 4764.818 kb on + strand at 4764.818 kb on + strand at 4764.818 kb on + strand at 4764.819 kb on - strand at 4764.866 kb on + strand at 4764.896 kb on + strand at 4764.943 kb on + strand at 4764.944 kb on - strand at 4764.944 kb on - strand at 4764.952 kb on + strand at 4764.953 kb on - strand at 4764.953 kb on - strand at 4764.953 kb on - strand at 4764.958 kb on + strand at 4764.959 kb on - strand at 4765.070 kb on + strand at 4765.070 kb on + strand at 4765.071 kb on - strand at 4765.071 kb on - strand at 4765.087 kb on + strand at 4765.088 kb on - strand at 4765.094 kb on + strand at 4765.095 kb on - strand at 4765.101 kb on + strand at 4765.101 kb on + strand at 4765.101 kb on + strand at 4765.103 kb on + strand at 4765.103 kb on + strand at 4765.111 kb on + strand at 4765.112 kb on - strand at 4765.130 kb on + strand at 4765.130 kb on + strand at 4765.130 kb on + strand at 4765.131 kb on - strand at 4765.175 kb on + strand at 4765.175 kb on + strand at 4765.176 kb on - strand at 4765.176 kb on - strand at 4765.183 kb on + strand at 4765.195 kb on - strand at 4765.208 kb on + strand at 4765.227 kb on - strand at 4765.266 kb on + strand at 4765.266 kb on + strand at 4765.267 kb on - strand at 4765.267 kb on - strand at 4765.299 kb on + strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.300 kb on - strand at 4765.393 kb on - strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.441 kb on + strand, within DDA3937_RS20955 at 4765.442 kb on - strand at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.442 kb on - strand, within DDA3937_RS20955 at 4765.449 kb on + strand at 4765.450 kb on - strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.460 kb on + strand, within DDA3937_RS20955 at 4765.461 kb on - strand, within DDA3937_RS20955 at 4765.461 kb on - strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.549 kb on + strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.550 kb on - strand, within DDA3937_RS20955 at 4765.554 kb on + strand, within DDA3937_RS20955 at 4765.781 kb on + strand, within DDA3937_RS20955
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,763,168 + -0.4 4,763,207 - -0.4 4,763,340 + -0.5 4,763,340 + -0.2 4,763,340 + +0.0 4,763,342 + -0.1 4,763,342 + -0.2 4,763,342 + +0.1 4,763,383 + +0.2 4,763,429 + -0.7 4,763,429 + -0.2 4,763,430 - +3.1 4,763,459 + +1.1 4,763,546 + -0.1 4,763,771 + DDA3937_RS20950 0.24 +1.7 4,763,771 + DDA3937_RS20950 0.24 +0.1 4,763,771 + DDA3937_RS20950 0.24 +0.1 4,763,771 + DDA3937_RS20950 0.24 -0.2 4,763,771 + DDA3937_RS20950 0.24 +0.6 4,763,771 + DDA3937_RS20950 0.24 -0.2 4,763,771 + DDA3937_RS20950 0.24 -0.5 4,763,772 - DDA3937_RS20950 0.24 +1.5 4,763,772 - DDA3937_RS20950 0.24 +0.8 4,763,772 - DDA3937_RS20950 0.24 -0.4 4,763,772 - DDA3937_RS20950 0.24 -0.2 4,763,774 + DDA3937_RS20950 0.24 +0.3 4,763,774 + DDA3937_RS20950 0.24 +0.2 4,763,774 + DDA3937_RS20950 0.24 -0.1 4,763,775 - DDA3937_RS20950 0.24 +0.6 4,763,858 + DDA3937_RS20950 0.30 -0.1 4,763,858 + DDA3937_RS20950 0.30 -0.4 4,763,859 - DDA3937_RS20950 0.30 -0.4 4,763,859 - DDA3937_RS20950 0.30 -0.2 4,763,859 - DDA3937_RS20950 0.30 -0.2 4,763,859 - DDA3937_RS20950 0.30 +0.4 4,763,859 - DDA3937_RS20950 0.30 +0.1 4,763,859 - DDA3937_RS20950 0.30 +0.6 4,763,859 - DDA3937_RS20950 0.30 +0.5 4,763,890 + DDA3937_RS20950 0.32 +1.0 4,763,981 + DDA3937_RS20950 0.38 +1.1 4,763,982 - DDA3937_RS20950 0.38 -0.4 4,764,036 + DDA3937_RS20950 0.41 +0.3 4,764,115 - DDA3937_RS20950 0.46 -0.5 4,764,115 - DDA3937_RS20950 0.46 +0.7 4,764,219 + DDA3937_RS20950 0.53 -0.6 4,764,220 - DDA3937_RS20950 0.53 -0.4 4,764,225 + DDA3937_RS20950 0.54 -0.6 4,764,245 + DDA3937_RS20950 0.55 -0.3 4,764,375 + DDA3937_RS20950 0.63 +0.4 4,764,375 + DDA3937_RS20950 0.63 +2.1 4,764,375 + DDA3937_RS20950 0.63 -0.0 4,764,476 + DDA3937_RS20950 0.70 -0.6 4,764,476 + DDA3937_RS20950 0.70 -0.5 4,764,528 + DDA3937_RS20950 0.73 +0.1 4,764,529 - DDA3937_RS20950 0.73 -0.5 4,764,815 + +0.1 4,764,815 + -0.7 4,764,818 + -0.5 4,764,818 + -1.2 4,764,818 + +0.1 4,764,819 - -1.0 4,764,866 + +0.5 4,764,896 + +0.4 4,764,943 + +0.9 4,764,944 - -0.1 4,764,944 - +0.1 4,764,952 + -0.5 4,764,953 - -0.9 4,764,953 - -0.7 4,764,953 - +0.2 4,764,958 + -0.3 4,764,959 - +0.6 4,765,070 + +0.8 4,765,070 + +0.4 4,765,071 - -1.1 4,765,071 - +0.8 4,765,087 + -0.2 4,765,088 - -0.7 4,765,094 + +0.1 4,765,095 - +0.8 4,765,101 + +0.5 4,765,101 + +0.7 4,765,101 + -0.3 4,765,103 + +1.0 4,765,103 + -0.2 4,765,111 + +0.1 4,765,112 - -0.2 4,765,130 + +1.1 4,765,130 + +0.2 4,765,130 + -0.0 4,765,131 - -0.2 4,765,175 + +0.8 4,765,175 + -0.9 4,765,176 - -1.9 4,765,176 - -0.2 4,765,183 + -1.1 4,765,195 - +0.4 4,765,208 + -2.4 4,765,227 - -0.2 4,765,266 + +1.6 4,765,266 + +0.1 4,765,267 - -0.5 4,765,267 - +0.4 4,765,299 + -0.8 4,765,300 - -0.0 4,765,300 - +0.6 4,765,300 - +0.4 4,765,300 - +0.4 4,765,393 - DDA3937_RS20955 0.14 -0.4 4,765,441 + DDA3937_RS20955 0.19 -0.9 4,765,441 + DDA3937_RS20955 0.19 -1.0 4,765,441 + DDA3937_RS20955 0.19 -0.2 4,765,441 + DDA3937_RS20955 0.19 +0.4 4,765,442 - +0.1 4,765,442 - DDA3937_RS20955 0.19 -0.3 4,765,442 - DDA3937_RS20955 0.19 -1.5 4,765,442 - DDA3937_RS20955 0.19 +1.5 4,765,449 + +0.8 4,765,450 - DDA3937_RS20955 0.20 -0.7 4,765,460 + DDA3937_RS20955 0.22 +1.5 4,765,460 + DDA3937_RS20955 0.22 -0.5 4,765,460 + DDA3937_RS20955 0.22 +0.5 4,765,460 + DDA3937_RS20955 0.22 +0.4 4,765,460 + DDA3937_RS20955 0.22 -1.3 4,765,460 + DDA3937_RS20955 0.22 -0.5 4,765,460 + DDA3937_RS20955 0.22 +0.1 4,765,460 + DDA3937_RS20955 0.22 -0.9 4,765,461 - DDA3937_RS20955 0.22 -0.5 4,765,461 - DDA3937_RS20955 0.22 +0.1 4,765,549 + DDA3937_RS20955 0.32 +1.1 4,765,549 + DDA3937_RS20955 0.32 +0.2 4,765,549 + DDA3937_RS20955 0.32 -1.2 4,765,549 + DDA3937_RS20955 0.32 -1.1 4,765,549 + DDA3937_RS20955 0.32 -0.2 4,765,549 + DDA3937_RS20955 0.32 +0.8 4,765,550 - DDA3937_RS20955 0.32 -0.7 4,765,550 - DDA3937_RS20955 0.32 -0.8 4,765,550 - DDA3937_RS20955 0.32 -0.7 4,765,550 - DDA3937_RS20955 0.32 -1.0 4,765,550 - DDA3937_RS20955 0.32 -0.1 4,765,550 - DDA3937_RS20955 0.32 -0.5 4,765,550 - DDA3937_RS20955 0.32 -1.1 4,765,550 - DDA3937_RS20955 0.32 +0.4 4,765,550 - DDA3937_RS20955 0.32 +1.6 4,765,550 - DDA3937_RS20955 0.32 -0.5 4,765,550 - +0.1 4,765,550 - DDA3937_RS20955 0.32 -1.7 4,765,550 - DDA3937_RS20955 0.32 +0.0 4,765,550 - DDA3937_RS20955 0.32 -0.2 4,765,554 + DDA3937_RS20955 0.33 +0.7 4,765,781 + DDA3937_RS20955 0.59 +0.5
Or see this region's nucleotide sequence