Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13405

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,059,130	-				+1.1
3,059,142	+				-1.9
3,059,149	-				-1.0
3,059,151	+				-1.1
3,059,151	+				-1.1
3,059,151	+				-1.6
3,059,152	-				-0.8
3,059,152	-				-1.7
3,059,152	-				-1.2
3,059,203	+		DDA3937_RS13400	0.12	-0.5
3,059,203	+		DDA3937_RS13400	0.12	-1.6
3,059,203	+		DDA3937_RS13400	0.12	-0.4
3,059,214	+		DDA3937_RS13400	0.13	-1.4
3,059,325	+		DDA3937_RS13400	0.24	-1.2
3,059,357	-		DDA3937_RS13400	0.27	-1.0
3,059,405	+		DDA3937_RS13400	0.31	-1.3
3,059,529	+		DDA3937_RS13400	0.44	-0.7
3,059,530	-		DDA3937_RS13400	0.44	-0.4
3,059,530	-		DDA3937_RS13400	0.44	-1.8
3,059,565	+		DDA3937_RS13400	0.47	-0.8
3,059,566	-		DDA3937_RS13400	0.47	-1.8
3,059,566	-		DDA3937_RS13400	0.47	-1.1
3,059,584	+		DDA3937_RS13400	0.49	-0.4
3,059,584	+		DDA3937_RS13400	0.49	-0.6
3,059,585	-		DDA3937_RS13400	0.49	+0.1
3,059,585	-		DDA3937_RS13400	0.49	+0.6
3,059,608	+		DDA3937_RS13400	0.51	-1.3
3,059,615	+		DDA3937_RS13400	0.52	-0.6
3,059,616	-		DDA3937_RS13400	0.52	-1.8
3,059,616	-		DDA3937_RS13400	0.52	-1.6
3,059,616	-		DDA3937_RS13400	0.52	-1.6
3,059,616	-		DDA3937_RS13400	0.52	-1.9
3,059,616	-		DDA3937_RS13400	0.52	+0.6
3,059,616	-		DDA3937_RS13400	0.52	-0.0
3,059,626	+		DDA3937_RS13400	0.53	-0.2
3,059,626	+		DDA3937_RS13400	0.53	+2.1
3,059,626	+		DDA3937_RS13400	0.53	-1.7
3,059,627	-		DDA3937_RS13400	0.53	-1.1
3,059,648	+		DDA3937_RS13400	0.55	-1.8
3,059,667	+		DDA3937_RS13400	0.57	-0.2
3,059,667	+		DDA3937_RS13400	0.57	-1.4
3,059,667	+		DDA3937_RS13400	0.57	-0.9
3,059,667	+		DDA3937_RS13400	0.57	-1.5
3,059,667	+		DDA3937_RS13400	0.57	-0.0
3,059,668	-		DDA3937_RS13400	0.57	-0.1
3,059,668	-		DDA3937_RS13400	0.57	+0.6
3,059,668	-		DDA3937_RS13400	0.57	-0.6
3,059,668	-		DDA3937_RS13400	0.57	-0.8
3,059,668	-		DDA3937_RS13400	0.57	-1.0
3,059,739	+		DDA3937_RS13400	0.64	-0.6
3,059,740	-		DDA3937_RS13400	0.64	-0.5
3,059,745	+		DDA3937_RS13400	0.65	-0.2
3,059,746	-		DDA3937_RS13400	0.65	-0.1
3,059,746	-		DDA3937_RS13400	0.65	-1.0
3,059,852	+		DDA3937_RS13400	0.75	-0.8
3,059,852	+		DDA3937_RS13400	0.75	-2.1
3,059,853	-		DDA3937_RS13400	0.75	-1.4
3,059,892	+		DDA3937_RS13400	0.79	-0.9
3,059,893	-		DDA3937_RS13400	0.79	-0.2
3,059,893	-		DDA3937_RS13400	0.79	-1.3
3,059,893	-		DDA3937_RS13400	0.79	-0.8
3,059,893	-		DDA3937_RS13400	0.79	-1.3
3,059,894	+		DDA3937_RS13400	0.79	-0.3
3,059,894	+		DDA3937_RS13400	0.79	-0.9
3,059,894	+		DDA3937_RS13400	0.79	-0.3
3,059,894	+		DDA3937_RS13400	0.79	-1.2
3,059,895	-		DDA3937_RS13400	0.80	-0.3
3,059,895	-		DDA3937_RS13400	0.80	-0.4
3,059,937	+		DDA3937_RS13400	0.84	-0.3
3,059,938	-		DDA3937_RS13400	0.84	-0.6
3,059,938	-		DDA3937_RS13400	0.84	-1.2
3,059,938	-		DDA3937_RS13400	0.84	+0.1
3,059,953	-		DDA3937_RS13400	0.85	-2.6
3,059,994	-		DDA3937_RS13400	0.89	-1.4
3,060,007	+				-0.7
3,060,007	+				-1.1
3,060,008	-				-0.2
3,060,012	+				-1.6
3,060,012	+				-1.1
3,060,013	-				-1.1
3,060,017	+				-0.8
3,060,017	+				-2.4
3,060,017	+				-1.0
3,060,017	+				-1.1
3,060,018	-				-0.8
3,060,018	-				-0.0
3,060,018	-				-1.4
3,060,018	-				-0.6
3,060,018	-				-0.4
3,060,018	-				-0.4
3,060,018	-				+0.9
3,060,028	+				-0.6
3,060,028	+				-0.4
3,060,029	-				-1.4
3,060,029	-				-2.0
3,060,160	+		DDA3937_RS13405	0.16	-0.7
3,060,160	+		DDA3937_RS13405	0.16	-2.4
3,060,160	+		DDA3937_RS13405	0.16	-1.2
3,060,160	+		DDA3937_RS13405	0.16	-1.1
3,060,161	-		DDA3937_RS13405	0.16	-1.4
3,060,208	+		DDA3937_RS13405	0.27	-2.0
3,060,209	-		DDA3937_RS13405	0.27	-0.8
3,060,257	-		DDA3937_RS13405	0.39	-0.3
3,060,288	+		DDA3937_RS13405	0.46	-1.6
3,060,288	+		DDA3937_RS13405	0.46	-1.3
3,060,289	-		DDA3937_RS13405	0.47	-2.0
3,060,289	-				+0.6
3,060,289	-		DDA3937_RS13405	0.47	-0.1
3,060,295	-		DDA3937_RS13405	0.48	-0.2
3,060,400	+		DDA3937_RS13405	0.73	+0.3
3,060,407	+		DDA3937_RS13405	0.75	+0.1
3,060,449	+		DDA3937_RS13405	0.85	-2.2
3,060,449	+		DDA3937_RS13405	0.85	-0.2
3,060,449	+		DDA3937_RS13405	0.85	-2.1
3,060,449	+		DDA3937_RS13405	0.85	-0.4
3,060,449	+		DDA3937_RS13405	0.85	-1.0
3,060,450	-		DDA3937_RS13405	0.85	-0.7
3,060,450	-		DDA3937_RS13405	0.85	-0.3
3,060,450	-		DDA3937_RS13405	0.85	+0.6
3,060,450	-		DDA3937_RS13405	0.85	-0.4
3,060,456	+		DDA3937_RS13405	0.87	-0.4
3,060,456	+		DDA3937_RS13405	0.87	-2.2
3,060,456	+		DDA3937_RS13405	0.87	-1.7
3,060,457	-		DDA3937_RS13405	0.87	-1.0
3,060,457	-		DDA3937_RS13405	0.87	-1.6
3,060,457	-		DDA3937_RS13405	0.87	-1.8
3,060,457	-		DDA3937_RS13405	0.87	-1.0
3,060,460	+		DDA3937_RS13405	0.88	-1.5
3,060,461	-		DDA3937_RS13405	0.88	-0.4
3,060,461	-		DDA3937_RS13405	0.88	-0.5
3,060,461	-		DDA3937_RS13405	0.88	+2.1
3,060,461	-		DDA3937_RS13405	0.88	-2.8
3,060,461	-		DDA3937_RS13405	0.88	-0.9
3,060,461	-		DDA3937_RS13405	0.88	-0.7
3,060,461	-		DDA3937_RS13405	0.88	-0.7
3,060,470	-				-2.6
3,060,473	-				-1.4
3,060,473	-				-1.2
3,060,475	+				+0.1
3,060,490	+				-1.8
3,060,490	+				-0.1
3,060,491	-				-1.1
3,060,491	-				-1.0
3,060,501	+				-0.7
3,060,576	+		DDA3937_RS13410	0.16	+0.1
3,060,593	+		DDA3937_RS13410	0.20	-2.0
3,060,593	+		DDA3937_RS13410	0.20	-1.5
3,060,659	+		DDA3937_RS13410	0.35	-0.9
3,060,686	+		DDA3937_RS13410	0.42	-1.0
3,060,696	+		DDA3937_RS13410	0.44	-1.2
3,060,697	-		DDA3937_RS13410	0.45	-1.2
3,060,697	-		DDA3937_RS13410	0.45	-1.8
3,060,744	+		DDA3937_RS13410	0.56	-2.4
3,060,744	+		DDA3937_RS13410	0.56	-1.6
3,060,745	-		DDA3937_RS13410	0.56	-0.7
3,060,749	+				+0.1
3,060,749	+		DDA3937_RS13410	0.57	-1.2
3,060,750	-		DDA3937_RS13410	0.57	-0.4
3,060,750	-		DDA3937_RS13410	0.57	-1.0
3,060,750	-		DDA3937_RS13410	0.57	-0.8
3,060,769	-		DDA3937_RS13410	0.62	-1.2
3,060,779	+		DDA3937_RS13410	0.64	-1.0
3,060,779	+		DDA3937_RS13410	0.64	-0.5
3,060,779	+		DDA3937_RS13410	0.64	-0.9
3,060,779	+		DDA3937_RS13410	0.64	-0.9
3,060,780	-		DDA3937_RS13410	0.65	-0.8
3,060,780	-		DDA3937_RS13410	0.65	-1.1
3,060,780	-		DDA3937_RS13410	0.65	-1.3
3,060,780	-		DDA3937_RS13410	0.65	-0.5
3,060,780	-		DDA3937_RS13410	0.65	-1.2
3,060,780	-		DDA3937_RS13410	0.65	-0.4
3,060,780	-		DDA3937_RS13410	0.65	-1.4
3,060,929	+				+0.1
3,060,930	-				+0.0
3,060,930	-				-1.3
3,060,930	-				-1.2
3,060,930	-				-0.9
3,060,973	+				+0.6
3,060,973	+				-1.7
3,060,973	+				-0.6
3,060,973	+				-0.2
3,060,973	+				-1.2
3,060,973	+				-0.0
3,060,974	-				-0.8
3,060,974	-				+0.8
3,060,974	-				+0.6
3,060,974	-				-0.9
3,060,992	+				-1.0
3,060,992	+				-2.3
3,060,993	-				-1.0
3,060,993	-				-0.1
3,060,993	-				-1.1
3,060,993	-				+1.1
3,060,993	-				-2.2
3,061,115	-		DDA3937_RS13415	0.21	+1.1
3,061,132	+		DDA3937_RS13415	0.23	-0.8
3,061,132	+		DDA3937_RS13415	0.23	-2.1
3,061,132	+		DDA3937_RS13415	0.23	-1.0
3,061,133	-		DDA3937_RS13415	0.23	-0.8
3,061,154	+		DDA3937_RS13415	0.26	+0.0
3,061,238	+		DDA3937_RS13415	0.37	-1.0
3,061,238	+		DDA3937_RS13415	0.37	-0.6
3,061,239	-		DDA3937_RS13415	0.37	-1.6
3,061,287	+		DDA3937_RS13415	0.44	-0.9
3,061,287	+		DDA3937_RS13415	0.44	-0.9
3,061,288	-		DDA3937_RS13415	0.44	-0.2
3,061,288	-		DDA3937_RS13415	0.44	-0.2
3,061,288	-		DDA3937_RS13415	0.44	-2.4
3,061,373	+		DDA3937_RS13415	0.56	-1.6
3,061,373	+		DDA3937_RS13415	0.56	-2.4
3,061,374	-		DDA3937_RS13415	0.56	-1.0
3,061,374	-		DDA3937_RS13415	0.56	-0.4
3,061,402	+		DDA3937_RS13415	0.59	-0.9
3,061,402	+		DDA3937_RS13415	0.59	-0.4
3,061,468	+		DDA3937_RS13415	0.68	-0.1
3,061,482	+		DDA3937_RS13415	0.70	-0.4
3,061,482	+		DDA3937_RS13415	0.70	+0.6
3,061,482	+		DDA3937_RS13415	0.70	-0.2
3,061,482	+		DDA3937_RS13415	0.70	+0.3
3,061,483	-		DDA3937_RS13415	0.70	-1.3
3,061,483	-		DDA3937_RS13415	0.70	-0.0
3,061,483	-		DDA3937_RS13415	0.70	-1.0
3,061,483	-		DDA3937_RS13415	0.70	-0.2
3,061,483	-		DDA3937_RS13415	0.70	-1.1
3,061,483	-		DDA3937_RS13415	0.70	-2.8
3,061,488	-		DDA3937_RS13415	0.71	-1.2