Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,340,708	+				-0.8
1,340,708	+				+0.0
1,340,708	+				-0.7
1,340,717	-				-2.3
1,340,915	+		DDA3937_RS05955	0.34	+0.0
1,340,915	+		DDA3937_RS05955	0.34	-0.7
1,340,915	+		DDA3937_RS05955	0.34	+1.5
1,340,915	+		DDA3937_RS05955	0.34	+0.7
1,340,916	-		DDA3937_RS05955	0.34	+0.7
1,340,916	-				-0.3
1,340,916	-		DDA3937_RS05955	0.34	+0.7
1,340,916	-		DDA3937_RS05955	0.34	-1.5
1,340,976	+		DDA3937_RS05955	0.42	-0.3
1,340,977	-		DDA3937_RS05955	0.42	+1.1
1,340,977	-		DDA3937_RS05955	0.42	+1.1
1,341,044	-		DDA3937_RS05955	0.51	-0.6
1,341,103	+		DDA3937_RS05955	0.58	-0.0
1,341,168	+		DDA3937_RS05955	0.67	+0.4
1,341,168	+		DDA3937_RS05955	0.67	-0.2
1,341,202	-		DDA3937_RS05955	0.71	-2.1
1,341,434	-				+0.1
1,341,434	-				-1.3
1,341,438	-				+0.1
1,341,451	-				-1.5
1,341,451	-				-0.2
1,341,471	-				-0.0
1,341,474	+				+0.4
1,341,474	+				-0.1
1,341,474	+				+0.1
1,341,474	+				+0.0
1,341,474	+				+0.0
1,341,474	+				+0.1
1,341,474	+				-0.7
1,341,475	-				+0.1
1,341,478	-				+0.8
1,341,484	+				+0.0
1,341,492	+				-0.5
1,341,493	-				-0.5
1,341,493	-				+1.3
1,341,499	+				+1.1
1,341,508	-				+1.1
1,341,508	-				-0.5
1,341,513	+				-1.9
1,341,513	+				-0.4
1,341,513	+				+0.1
1,341,513	+				+1.0
1,341,513	+				+0.1
1,341,513	+				+0.0
1,341,513	+				+1.0
1,341,514	-				-0.9
1,341,514	-				-0.3
1,341,516	+				+0.6
1,341,516	+				-0.0
1,341,516	+				-0.1
1,341,517	-				-2.2
1,341,517	-				+0.9
1,341,517	-				-0.4
1,341,628	+				+0.4
1,341,628	+				-0.2
1,341,629	-				-1.4
1,341,629	-				-0.4
1,341,752	+		DDA3937_RS05960	0.17	+0.3
1,341,753	-		DDA3937_RS05960	0.18	-0.9
1,341,787	-		DDA3937_RS05960	0.23	-1.9
1,341,787	-		DDA3937_RS05960	0.23	+0.9
1,341,834	+		DDA3937_RS05960	0.30	+0.8
1,341,836	+		DDA3937_RS05960	0.31	+1.6
1,341,836	+		DDA3937_RS05960	0.31	-2.1
1,341,836	+		DDA3937_RS05960	0.31	-0.0
1,341,837	-		DDA3937_RS05960	0.31	+1.7
1,341,848	+		DDA3937_RS05960	0.32	-0.3
1,341,849	-		DDA3937_RS05960	0.33	-0.3
1,341,934	+		DDA3937_RS05960	0.46	+0.3
1,341,934	+		DDA3937_RS05960	0.46	-0.7
1,342,152	+		DDA3937_RS05960	0.80	-0.2
1,342,153	-		DDA3937_RS05960	0.80	+0.7
1,342,183	+		DDA3937_RS05960	0.85	+1.0
1,342,284	+				+0.4
1,342,285	-				-1.9
1,342,285	-				+0.4
1,342,285	-				-0.2
1,342,287	+				-0.6
1,342,517	+		DDA3937_RS05965	0.39	-0.0
1,342,517	+		DDA3937_RS05965	0.39	+1.0
1,342,517	+		DDA3937_RS05965	0.39	-1.0
1,342,517	+		DDA3937_RS05965	0.39	-0.2
1,342,539	+		DDA3937_RS05965	0.42	+0.3
1,342,540	-		DDA3937_RS05965	0.42	+0.2
1,342,551	+		DDA3937_RS05965	0.44	-0.5
1,342,732	-		DDA3937_RS05965	0.70	+0.5
1,343,257	-		DDA3937_RS05970	0.13	-0.4