Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03660

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03655 and DDA3937_RS03660 are separated by 77 nucleotidesDDA3937_RS03660 and DDA3937_RS03665 are separated by 212 nucleotides DDA3937_RS03655: DDA3937_RS03655 - LysR family transcriptional regulator, at 807,074 to 807,961 _RS03655 DDA3937_RS03660: DDA3937_RS03660 - 2,5-didehydrogluconate reductase DkgB, at 808,039 to 808,845 _RS03660 DDA3937_RS03665: DDA3937_RS03665 - MurR/RpiR family transcriptional regulator, at 809,058 to 809,915 _RS03665 Position (kb) 808 809Strain fitness (log2 ratio) -2 -1 0 1at 807.269 kb on + strandat 807.291 kb on + strand, within DDA3937_RS03655at 807.291 kb on + strand, within DDA3937_RS03655at 807.291 kb on + strand, within DDA3937_RS03655at 807.291 kb on + strand, within DDA3937_RS03655at 807.292 kb on - strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.294 kb on + strand, within DDA3937_RS03655at 807.295 kb on - strand, within DDA3937_RS03655at 807.295 kb on - strand, within DDA3937_RS03655at 807.295 kb on - strand, within DDA3937_RS03655at 807.553 kb on + strand, within DDA3937_RS03655at 807.560 kb on + strand, within DDA3937_RS03655at 807.560 kb on + strand, within DDA3937_RS03655at 807.587 kb on + strand, within DDA3937_RS03655at 807.587 kb on + strand, within DDA3937_RS03655at 807.587 kb on + strand, within DDA3937_RS03655at 807.587 kb on + strand, within DDA3937_RS03655at 807.588 kb on - strand, within DDA3937_RS03655at 807.588 kb on - strand, within DDA3937_RS03655at 807.588 kb on - strand, within DDA3937_RS03655at 807.588 kb on - strand, within DDA3937_RS03655at 807.588 kb on - strand, within DDA3937_RS03655at 807.707 kb on + strand, within DDA3937_RS03655at 807.707 kb on + strand, within DDA3937_RS03655at 807.797 kb on + strand, within DDA3937_RS03655at 807.797 kb on + strand, within DDA3937_RS03655at 807.797 kb on + strand, within DDA3937_RS03655at 807.798 kb on - strand, within DDA3937_RS03655at 807.887 kb on + strandat 807.890 kb on + strandat 807.891 kb on - strandat 807.891 kb on - strandat 807.959 kb on + strandat 807.960 kb on - strandat 807.988 kb on + strandat 807.989 kb on - strandat 807.989 kb on - strandat 808.179 kb on + strand, within DDA3937_RS03660at 808.278 kb on + strand, within DDA3937_RS03660at 808.313 kb on + strand, within DDA3937_RS03660at 808.313 kb on + strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.314 kb on - strand, within DDA3937_RS03660at 808.577 kb on + strand, within DDA3937_RS03660at 808.578 kb on - strand, within DDA3937_RS03660at 808.667 kb on + strand, within DDA3937_RS03660at 808.667 kb on + strand, within DDA3937_RS03660at 808.668 kb on - strand, within DDA3937_RS03660at 808.668 kb on - strand, within DDA3937_RS03660at 808.668 kb on - strand, within DDA3937_RS03660at 808.731 kb on - strandat 808.731 kb on - strand, within DDA3937_RS03660at 808.731 kb on - strand, within DDA3937_RS03660at 808.795 kb on + strandat 808.795 kb on + strandat 808.795 kb on + strandat 808.796 kb on - strandat 808.796 kb on - strandat 808.796 kb on - strandat 808.806 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.818 kb on + strandat 808.819 kb on - strandat 808.819 kb on - strandat 808.819 kb on - strandat 808.819 kb on - strandat 808.870 kb on + strandat 808.947 kb on + strandat 808.960 kb on + strandat 808.961 kb on - strandat 808.972 kb on + strandat 808.973 kb on - strandat 808.973 kb on - strandat 809.042 kb on - strandat 809.308 kb on + strand, within DDA3937_RS03665at 809.309 kb on - strand, within DDA3937_RS03665at 809.309 kb on - strand, within DDA3937_RS03665at 809.358 kb on + strand, within DDA3937_RS03665at 809.358 kb on + strand, within DDA3937_RS03665at 809.358 kb on + strand, within DDA3937_RS03665at 809.358 kb on + strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.359 kb on - strand, within DDA3937_RS03665at 809.428 kb on + strand, within DDA3937_RS03665at 809.437 kb on + strand, within DDA3937_RS03665at 809.437 kb on + strand, within DDA3937_RS03665at 809.437 kb on + strand, within DDA3937_RS03665at 809.437 kb on + strand, within DDA3937_RS03665at 809.437 kb on + strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.438 kb on - strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.476 kb on + strand, within DDA3937_RS03665at 809.477 kb on - strand, within DDA3937_RS03665at 809.477 kb on - strand, within DDA3937_RS03665at 809.477 kb on - strand, within DDA3937_RS03665at 809.477 kb on - strand, within DDA3937_RS03665at 809.477 kb on - strand, within DDA3937_RS03665at 809.653 kb on + strand, within DDA3937_RS03665at 809.654 kb on - strand, within DDA3937_RS03665at 809.654 kb on - strand, within DDA3937_RS03665at 809.654 kb on - strand, within DDA3937_RS03665at 809.758 kb on - strand, within DDA3937_RS03665at 809.758 kb on - strand, within DDA3937_RS03665at 809.810 kb on + strand, within DDA3937_RS03665at 809.810 kb on + strand, within DDA3937_RS03665at 809.811 kb on - strand, within DDA3937_RS03665at 809.824 kb on + strand, within DDA3937_RS03665at 809.825 kb on - strand, within DDA3937_RS03665at 809.825 kb on - strand, within DDA3937_RS03665at 809.825 kb on - strand, within DDA3937_RS03665

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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807,269 + -0.9
807,291 + DDA3937_RS03655 0.24 -0.1
807,291 + DDA3937_RS03655 0.24 +0.1
807,291 + DDA3937_RS03655 0.24 -0.1
807,291 + DDA3937_RS03655 0.24 -0.1
807,292 - DDA3937_RS03655 0.25 -0.4
807,294 + DDA3937_RS03655 0.25 -0.6
807,294 + DDA3937_RS03655 0.25 +0.3
807,294 + DDA3937_RS03655 0.25 -0.5
807,294 + DDA3937_RS03655 0.25 +0.4
807,294 + DDA3937_RS03655 0.25 -0.6
807,294 + DDA3937_RS03655 0.25 -0.9
807,294 + DDA3937_RS03655 0.25 +0.7
807,294 + DDA3937_RS03655 0.25 +0.9
807,295 - DDA3937_RS03655 0.25 +1.1
807,295 - DDA3937_RS03655 0.25 -0.7
807,295 - DDA3937_RS03655 0.25 -2.3
807,553 + DDA3937_RS03655 0.54 +1.1
807,560 + DDA3937_RS03655 0.55 -0.1
807,560 + DDA3937_RS03655 0.55 +0.4
807,587 + DDA3937_RS03655 0.58 -0.7
807,587 + DDA3937_RS03655 0.58 -0.7
807,587 + DDA3937_RS03655 0.58 +1.2
807,587 + DDA3937_RS03655 0.58 +0.1
807,588 - DDA3937_RS03655 0.58 +0.6
807,588 - DDA3937_RS03655 0.58 +0.3
807,588 - DDA3937_RS03655 0.58 -0.0
807,588 - DDA3937_RS03655 0.58 +0.3
807,588 - DDA3937_RS03655 0.58 -0.0
807,707 + DDA3937_RS03655 0.71 +0.3
807,707 + DDA3937_RS03655 0.71 -0.1
807,797 + DDA3937_RS03655 0.81 +0.9
807,797 + DDA3937_RS03655 0.81 +0.1
807,797 + DDA3937_RS03655 0.81 -0.4
807,798 - DDA3937_RS03655 0.82 -1.7
807,887 + +1.3
807,890 + +1.1
807,891 - +0.6
807,891 - +0.4
807,959 + -0.2
807,960 - +0.1
807,988 + -0.7
807,989 - +0.6
807,989 - -1.1
808,179 + DDA3937_RS03660 0.17 -0.5
808,278 + DDA3937_RS03660 0.30 -0.1
808,313 + DDA3937_RS03660 0.34 -0.6
808,313 + DDA3937_RS03660 0.34 -0.3
808,314 - DDA3937_RS03660 0.34 -0.9
808,314 - DDA3937_RS03660 0.34 +0.3
808,314 - DDA3937_RS03660 0.34 +0.0
808,314 - DDA3937_RS03660 0.34 -0.9
808,314 - DDA3937_RS03660 0.34 -1.1
808,314 - DDA3937_RS03660 0.34 -0.7
808,314 - DDA3937_RS03660 0.34 +0.3
808,314 - DDA3937_RS03660 0.34 -0.7
808,577 + DDA3937_RS03660 0.67 -0.9
808,578 - DDA3937_RS03660 0.67 +0.3
808,667 + DDA3937_RS03660 0.78 +0.2
808,667 + DDA3937_RS03660 0.78 +0.3
808,668 - DDA3937_RS03660 0.78 -0.8
808,668 - DDA3937_RS03660 0.78 -0.6
808,668 - DDA3937_RS03660 0.78 -0.7
808,731 - +0.3
808,731 - DDA3937_RS03660 0.86 -0.5
808,731 - DDA3937_RS03660 0.86 -1.5
808,795 + -0.1
808,795 + -0.1
808,795 + +0.4
808,796 - +1.0
808,796 - -1.1
808,796 - -0.7
808,806 + +1.1
808,818 + -0.9
808,818 + -0.9
808,818 + -1.1
808,818 + -0.1
808,818 + +0.2
808,818 + -0.1
808,818 + +0.2
808,819 - -0.1
808,819 - -0.2
808,819 - -0.1
808,819 - -1.0
808,870 + -1.1
808,947 + -0.5
808,960 + +0.7
808,961 - -0.6
808,972 + -0.8
808,973 - +0.2
808,973 - +0.1
809,042 - -0.1
809,308 + DDA3937_RS03665 0.29 +0.2
809,309 - DDA3937_RS03665 0.29 +0.0
809,309 - DDA3937_RS03665 0.29 +0.3
809,358 + DDA3937_RS03665 0.35 +0.3
809,358 + DDA3937_RS03665 0.35 +0.3
809,358 + DDA3937_RS03665 0.35 +0.7
809,358 + DDA3937_RS03665 0.35 -1.1
809,359 - DDA3937_RS03665 0.35 -0.3
809,359 - DDA3937_RS03665 0.35 +0.2
809,359 - DDA3937_RS03665 0.35 -0.0
809,359 - DDA3937_RS03665 0.35 -0.2
809,359 - DDA3937_RS03665 0.35 +1.2
809,359 - DDA3937_RS03665 0.35 +0.3
809,359 - DDA3937_RS03665 0.35 +0.4
809,428 + DDA3937_RS03665 0.43 -0.8
809,437 + DDA3937_RS03665 0.44 +0.5
809,437 + DDA3937_RS03665 0.44 +0.5
809,437 + DDA3937_RS03665 0.44 +0.5
809,437 + DDA3937_RS03665 0.44 +0.4
809,437 + DDA3937_RS03665 0.44 +0.8
809,438 - DDA3937_RS03665 0.44 +0.4
809,438 - DDA3937_RS03665 0.44 +0.2
809,438 - DDA3937_RS03665 0.44 -0.6
809,438 - DDA3937_RS03665 0.44 +1.0
809,438 - DDA3937_RS03665 0.44 +0.9
809,438 - DDA3937_RS03665 0.44 +0.1
809,476 + DDA3937_RS03665 0.49 -0.4
809,476 + DDA3937_RS03665 0.49 +0.3
809,476 + DDA3937_RS03665 0.49 +0.1
809,476 + DDA3937_RS03665 0.49 -0.1
809,476 + DDA3937_RS03665 0.49 +0.1
809,476 + DDA3937_RS03665 0.49 -0.3
809,477 - DDA3937_RS03665 0.49 +0.4
809,477 - DDA3937_RS03665 0.49 +0.4
809,477 - DDA3937_RS03665 0.49 -0.3
809,477 - DDA3937_RS03665 0.49 +0.5
809,477 - DDA3937_RS03665 0.49 +0.4
809,653 + DDA3937_RS03665 0.69 +0.2
809,654 - DDA3937_RS03665 0.69 +0.1
809,654 - DDA3937_RS03665 0.69 +0.3
809,654 - DDA3937_RS03665 0.69 +0.3
809,758 - DDA3937_RS03665 0.82 +0.1
809,758 - DDA3937_RS03665 0.82 +0.7
809,810 + DDA3937_RS03665 0.88 -1.5
809,810 + DDA3937_RS03665 0.88 +0.5
809,811 - DDA3937_RS03665 0.88 -0.4
809,824 + DDA3937_RS03665 0.89 +0.7
809,825 - DDA3937_RS03665 0.89 +0.1
809,825 - DDA3937_RS03665 0.89 -0.1
809,825 - DDA3937_RS03665 0.89 +0.6

Or see this region's nucleotide sequence