Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02540 and DDA3937_RS02545 are separated by 529 nucleotides DDA3937_RS02545 and DDA3937_RS02550 are separated by 0 nucleotides DDA3937_RS02550 and DDA3937_RS02555 are separated by 16 nucleotides
DDA3937_RS02540: DDA3937_RS02540 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 560,947 to 561,447
_RS02540
DDA3937_RS02545: DDA3937_RS02545 - heavy metal translocating P-type ATPase, at 561,977 to 564,415
_RS02545
DDA3937_RS02550: DDA3937_RS02550 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 564,416 to 564,847
_RS02550
DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886
_RS02555
Position (kb) 561
562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.982 kb on + strand at 561.143 kb on - strand, within DDA3937_RS02540 at 561.392 kb on - strand, within DDA3937_RS02540 at 561.437 kb on - strand at 561.437 kb on - strand at 561.437 kb on - strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.480 kb on - strand at 561.480 kb on - strand at 561.514 kb on + strand at 561.515 kb on - strand at 561.540 kb on - strand at 561.551 kb on + strand at 561.551 kb on + strand at 561.552 kb on - strand at 561.583 kb on - strand at 561.594 kb on + strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.631 kb on - strand at 561.631 kb on - strand at 561.693 kb on + strand at 561.693 kb on + strand at 561.694 kb on - strand at 561.694 kb on - strand at 561.795 kb on - strand at 561.795 kb on - strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.800 kb on + strand at 561.881 kb on + strand at 561.881 kb on + strand at 561.891 kb on + strand at 561.892 kb on - strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 562.321 kb on + strand, within DDA3937_RS02545 at 562.321 kb on + strand, within DDA3937_RS02545 at 562.489 kb on + strand, within DDA3937_RS02545 at 562.490 kb on - strand, within DDA3937_RS02545 at 562.696 kb on - strand, within DDA3937_RS02545 at 563.094 kb on + strand, within DDA3937_RS02545 at 563.094 kb on + strand, within DDA3937_RS02545 at 563.165 kb on + strand, within DDA3937_RS02545 at 563.166 kb on - strand, within DDA3937_RS02545 at 563.166 kb on - strand, within DDA3937_RS02545 at 563.178 kb on + strand, within DDA3937_RS02545 at 563.179 kb on - strand, within DDA3937_RS02545 at 563.179 kb on - strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.251 kb on + strand, within DDA3937_RS02545 at 563.252 kb on - strand at 563.266 kb on + strand, within DDA3937_RS02545 at 563.266 kb on + strand, within DDA3937_RS02545 at 563.266 kb on + strand, within DDA3937_RS02545 at 563.434 kb on + strand at 563.435 kb on - strand, within DDA3937_RS02545 at 563.435 kb on - strand, within DDA3937_RS02545 at 563.435 kb on - strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.519 kb on + strand, within DDA3937_RS02545 at 563.520 kb on - strand, within DDA3937_RS02545 at 563.611 kb on + strand, within DDA3937_RS02545 at 563.612 kb on - strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.893 kb on + strand, within DDA3937_RS02545 at 563.894 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.104 kb on - strand, within DDA3937_RS02545 at 564.374 kb on + strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.378 kb on - strand at 564.388 kb on + strand at 564.389 kb on - strand at 564.489 kb on + strand, within DDA3937_RS02550 at 564.489 kb on + strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.522 kb on - strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.530 kb on + strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.531 kb on - strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.533 kb on + strand, within DDA3937_RS02550 at 564.534 kb on - strand, within DDA3937_RS02550 at 564.568 kb on + strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.569 kb on - strand, within DDA3937_RS02550 at 564.832 kb on + strand at 564.885 kb on - strand at 564.923 kb on + strand at 564.923 kb on + strand at 564.948 kb on + strand at 564.949 kb on - strand at 565.168 kb on - strand, within DDA3937_RS02555 at 565.168 kb on - strand, within DDA3937_RS02555 at 565.334 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 560,982 + -0.7 561,143 - DDA3937_RS02540 0.39 +0.4 561,392 - DDA3937_RS02540 0.89 -0.8 561,437 - -2.1 561,437 - -0.2 561,437 - -0.4 561,479 + -0.2 561,479 + +0.5 561,479 + -0.5 561,479 + -1.4 561,480 - +0.1 561,480 - -0.0 561,514 + -3.0 561,515 - -0.6 561,540 - +0.2 561,551 + +0.7 561,551 + +0.5 561,552 - -0.1 561,583 - +0.6 561,594 + +0.0 561,594 + +0.4 561,595 - +1.3 561,595 - +0.1 561,595 - -0.1 561,595 - -0.7 561,595 - +0.3 561,631 - -0.0 561,631 - -1.6 561,693 + +0.4 561,693 + -0.0 561,694 - -0.6 561,694 - +0.6 561,795 - -1.8 561,795 - -0.5 561,796 + -1.0 561,796 + -1.0 561,796 + +0.7 561,797 - +0.5 561,797 - +0.6 561,797 - -0.0 561,800 + +1.0 561,881 + +0.1 561,881 + +1.0 561,891 + -0.7 561,892 - -0.1 561,895 + +0.6 561,895 + -0.8 561,895 + -0.1 561,924 + -0.1 561,924 + -0.1 561,924 + +0.1 562,321 + DDA3937_RS02545 0.14 -0.2 562,321 + DDA3937_RS02545 0.14 -0.3 562,489 + DDA3937_RS02545 0.21 +1.6 562,490 - DDA3937_RS02545 0.21 +0.4 562,696 - DDA3937_RS02545 0.29 -0.0 563,094 + DDA3937_RS02545 0.46 -2.0 563,094 + DDA3937_RS02545 0.46 -1.0 563,165 + DDA3937_RS02545 0.49 -2.3 563,166 - DDA3937_RS02545 0.49 -0.7 563,166 - DDA3937_RS02545 0.49 -0.2 563,178 + DDA3937_RS02545 0.49 -0.3 563,179 - DDA3937_RS02545 0.49 -0.4 563,179 - DDA3937_RS02545 0.49 -1.6 563,251 + DDA3937_RS02545 0.52 -1.1 563,251 + DDA3937_RS02545 0.52 -1.2 563,251 + DDA3937_RS02545 0.52 +0.1 563,252 - -1.0 563,266 + DDA3937_RS02545 0.53 -0.9 563,266 + DDA3937_RS02545 0.53 -0.9 563,266 + DDA3937_RS02545 0.53 -1.4 563,434 + +0.6 563,435 - DDA3937_RS02545 0.60 -1.6 563,435 - DDA3937_RS02545 0.60 +0.4 563,435 - DDA3937_RS02545 0.60 -1.1 563,519 + DDA3937_RS02545 0.63 -0.4 563,519 + DDA3937_RS02545 0.63 -1.3 563,519 + DDA3937_RS02545 0.63 -0.4 563,519 + DDA3937_RS02545 0.63 -0.7 563,519 + DDA3937_RS02545 0.63 -0.6 563,520 - DDA3937_RS02545 0.63 -0.4 563,611 + DDA3937_RS02545 0.67 +0.7 563,612 - DDA3937_RS02545 0.67 -0.2 563,893 + DDA3937_RS02545 0.79 +0.1 563,893 + DDA3937_RS02545 0.79 -0.7 563,893 + DDA3937_RS02545 0.79 -0.2 563,894 - DDA3937_RS02545 0.79 -0.4 564,104 - DDA3937_RS02545 0.87 -0.8 564,104 - DDA3937_RS02545 0.87 +0.2 564,374 + +0.2 564,375 - +0.5 564,375 - +0.3 564,378 - -0.2 564,388 + -0.6 564,389 - -0.1 564,489 + DDA3937_RS02550 0.17 -0.0 564,489 + DDA3937_RS02550 0.17 -0.2 564,522 - DDA3937_RS02550 0.25 +0.2 564,522 - DDA3937_RS02550 0.25 -1.8 564,530 + DDA3937_RS02550 0.26 -0.4 564,530 + DDA3937_RS02550 0.26 -0.6 564,531 - DDA3937_RS02550 0.27 +0.1 564,531 - DDA3937_RS02550 0.27 -0.5 564,531 - DDA3937_RS02550 0.27 -0.6 564,533 + DDA3937_RS02550 0.27 -0.0 564,533 + DDA3937_RS02550 0.27 +0.7 564,534 - DDA3937_RS02550 0.27 +0.2 564,568 + DDA3937_RS02550 0.35 +0.9 564,569 - DDA3937_RS02550 0.35 +0.6 564,569 - DDA3937_RS02550 0.35 -0.2 564,832 + -2.0 564,885 - +0.9 564,923 + -0.7 564,923 + +0.7 564,948 + +1.7 564,949 - -0.5 565,168 - DDA3937_RS02555 0.30 +0.3 565,168 - DDA3937_RS02555 0.30 +1.2 565,334 + DDA3937_RS02555 0.46 -0.2 565,336 + DDA3937_RS02555 0.46 -0.0 565,336 + DDA3937_RS02555 0.46 -0.5 565,336 + DDA3937_RS02555 0.46 -1.5 565,336 + DDA3937_RS02555 0.46 -0.5 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 +1.0 565,336 + DDA3937_RS02555 0.46 -1.0 565,336 + -1.0 565,336 + DDA3937_RS02555 0.46 -0.6 565,336 + DDA3937_RS02555 0.46 +0.1 565,336 + DDA3937_RS02555 0.46 -0.6 565,336 + DDA3937_RS02555 0.46 -0.6 565,337 - DDA3937_RS02555 0.46 -0.4 565,337 - DDA3937_RS02555 0.46 +1.6 565,337 - DDA3937_RS02555 0.46 +0.2 565,337 - DDA3937_RS02555 0.46 +0.5 565,337 - DDA3937_RS02555 0.46 +2.0 565,337 - DDA3937_RS02555 0.46 +0.6 565,337 - DDA3937_RS02555 0.46 -1.4 565,337 - DDA3937_RS02555 0.46 +0.2
Or see this region's nucleotide sequence