Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides DDA3937_RS01960 and DDA3937_RS01965 are separated by 283 nucleotides DDA3937_RS01965 and DDA3937_RS01970 are separated by 141 nucleotides
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527
_RS01965
DDA3937_RS01970: DDA3937_RS01970 - Tar ligand binding domain-containing protein, at 440,669 to 442,288
_RS01970
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand at 438.799 kb on - strand, within DDA3937_RS01960 at 438.834 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 439.096 kb on - strand, within DDA3937_RS01960 at 439.133 kb on - strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.135 kb on - strand at 439.174 kb on + strand at 439.174 kb on + strand at 439.178 kb on + strand at 439.192 kb on - strand at 439.210 kb on + strand at 439.210 kb on + strand at 439.211 kb on - strand at 439.309 kb on + strand at 439.310 kb on - strand at 439.310 kb on - strand at 439.323 kb on - strand at 439.323 kb on - strand at 439.327 kb on + strand at 439.327 kb on + strand at 439.328 kb on - strand at 439.329 kb on + strand at 439.330 kb on - strand at 439.358 kb on - strand at 439.359 kb on + strand at 439.405 kb on + strand at 439.406 kb on - strand at 439.418 kb on - strand at 439.437 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.459 kb on + strand at 439.460 kb on - strand at 439.460 kb on - strand at 439.539 kb on + strand at 439.540 kb on - strand at 439.540 kb on - strand at 439.612 kb on + strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.622 kb on + strand, within DDA3937_RS01965 at 439.623 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand at 439.640 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand, within DDA3937_RS01965 at 439.653 kb on + strand, within DDA3937_RS01965 at 439.672 kb on + strand, within DDA3937_RS01965 at 439.692 kb on + strand, within DDA3937_RS01965 at 439.693 kb on - strand, within DDA3937_RS01965 at 439.719 kb on + strand, within DDA3937_RS01965 at 439.720 kb on - strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.766 kb on - strand, within DDA3937_RS01965 at 439.822 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.894 kb on + strand, within DDA3937_RS01965 at 439.895 kb on - strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.135 kb on - strand at 440.135 kb on - strand, within DDA3937_RS01965 at 440.156 kb on - strand, within DDA3937_RS01965 at 440.166 kb on - strand, within DDA3937_RS01965 at 440.254 kb on + strand, within DDA3937_RS01965 at 440.255 kb on - strand, within DDA3937_RS01965 at 440.255 kb on - strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.283 kb on - strand, within DDA3937_RS01965 at 440.354 kb on - strand, within DDA3937_RS01965 at 440.431 kb on + strand at 440.431 kb on + strand at 440.431 kb on + strand at 440.432 kb on - strand at 440.482 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.522 kb on - strand at 440.590 kb on + strand at 440.591 kb on - strand at 440.591 kb on - strand at 440.617 kb on + strand at 440.618 kb on - strand at 440.645 kb on + strand at 440.645 kb on + strand at 440.646 kb on - strand at 440.649 kb on - strand at 440.668 kb on + strand at 440.669 kb on - strand at 440.669 kb on - strand at 440.704 kb on + strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.707 kb on + strand at 440.707 kb on + strand at 440.707 kb on + strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.780 kb on - strand at 440.780 kb on - strand at 440.871 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.987 kb on + strand, within DDA3937_RS01970 at 440.987 kb on + strand, within DDA3937_RS01970 at 440.988 kb on - strand, within DDA3937_RS01970 at 441.140 kb on + strand, within DDA3937_RS01970 at 441.140 kb on + strand, within DDA3937_RS01970 at 441.141 kb on - strand, within DDA3937_RS01970 at 441.179 kb on + strand, within DDA3937_RS01970 at 441.179 kb on + strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.206 kb on + strand, within DDA3937_RS01970 at 441.206 kb on + strand, within DDA3937_RS01970 at 441.207 kb on - strand, within DDA3937_RS01970 at 441.207 kb on - strand, within DDA3937_RS01970 at 441.229 kb on + strand, within DDA3937_RS01970 at 441.235 kb on + strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.299 kb on - strand, within DDA3937_RS01970 at 441.345 kb on + strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.458 kb on - strand, within DDA3937_RS01970 at 441.527 kb on - strand, within DDA3937_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 438,499 + DDA3937_RS01955 0.73 -0.9 438,499 + DDA3937_RS01955 0.73 -0.7 438,499 + DDA3937_RS01955 0.73 -1.6 438,499 + DDA3937_RS01955 0.73 +0.4 438,499 + DDA3937_RS01955 0.73 +0.7 438,500 - DDA3937_RS01955 0.74 +0.9 438,500 - DDA3937_RS01955 0.74 +0.4 438,500 - DDA3937_RS01955 0.74 -0.6 438,500 - DDA3937_RS01955 0.74 +0.0 438,500 - DDA3937_RS01955 0.74 +2.0 438,500 - DDA3937_RS01955 0.74 -1.1 438,500 - DDA3937_RS01955 0.74 +0.2 438,584 - DDA3937_RS01955 0.88 +0.1 438,603 + -1.8 438,628 + -1.1 438,639 + -0.4 438,640 - -0.8 438,799 - DDA3937_RS01960 0.22 +0.8 438,834 - DDA3937_RS01960 0.29 +0.6 438,843 - DDA3937_RS01960 0.31 -0.1 438,843 - DDA3937_RS01960 0.31 -0.1 439,096 - DDA3937_RS01960 0.83 -0.1 439,133 - +0.1 439,134 + -0.8 439,134 + +0.2 439,134 + +0.0 439,134 + +0.1 439,135 - +0.5 439,174 + -0.1 439,174 + -0.4 439,178 + -0.1 439,192 - +0.0 439,210 + +0.0 439,210 + +0.5 439,211 - +1.6 439,309 + +0.7 439,310 - +0.3 439,310 - +0.7 439,323 - -0.3 439,323 - -0.8 439,327 + +0.1 439,327 + +0.8 439,328 - -0.7 439,329 + -0.1 439,330 - -0.8 439,358 - +0.5 439,359 + +0.8 439,405 + -0.1 439,406 - -0.8 439,418 - -0.6 439,437 + -0.7 439,443 + -0.6 439,443 + -0.1 439,443 + -0.6 439,459 + +0.7 439,460 - -0.4 439,460 - +0.8 439,539 + -0.4 439,540 - -0.2 439,540 - -0.3 439,612 + DDA3937_RS01965 0.14 +0.2 439,620 - DDA3937_RS01965 0.15 -0.7 439,620 - DDA3937_RS01965 0.15 -0.5 439,622 + DDA3937_RS01965 0.15 +0.2 439,623 - DDA3937_RS01965 0.15 +0.3 439,640 - +0.0 439,640 - DDA3937_RS01965 0.17 -0.6 439,640 - DDA3937_RS01965 0.17 -0.9 439,653 + DDA3937_RS01965 0.18 -0.2 439,672 + DDA3937_RS01965 0.20 +0.6 439,692 + DDA3937_RS01965 0.22 -0.6 439,693 - DDA3937_RS01965 0.22 -0.1 439,719 + DDA3937_RS01965 0.24 -2.8 439,720 - DDA3937_RS01965 0.24 +0.2 439,765 + DDA3937_RS01965 0.29 -0.8 439,765 + DDA3937_RS01965 0.29 -0.2 439,766 - DDA3937_RS01965 0.29 -0.2 439,822 + DDA3937_RS01965 0.34 +0.5 439,835 + DDA3937_RS01965 0.35 -1.2 439,835 + DDA3937_RS01965 0.35 +0.1 439,836 - DDA3937_RS01965 0.35 +0.3 439,836 - DDA3937_RS01965 0.35 -0.2 439,836 - DDA3937_RS01965 0.35 +0.4 439,836 - DDA3937_RS01965 0.35 -0.2 439,836 - DDA3937_RS01965 0.35 -0.6 439,837 + DDA3937_RS01965 0.35 -0.2 439,837 + DDA3937_RS01965 0.35 -1.1 439,837 + DDA3937_RS01965 0.35 -0.4 439,837 + DDA3937_RS01965 0.35 -0.7 439,837 + DDA3937_RS01965 0.35 +1.8 439,837 + DDA3937_RS01965 0.35 -0.2 439,837 + DDA3937_RS01965 0.35 +1.0 439,837 + DDA3937_RS01965 0.35 -1.6 439,838 - DDA3937_RS01965 0.35 -1.8 439,838 - DDA3937_RS01965 0.35 -0.6 439,838 - DDA3937_RS01965 0.35 +0.1 439,841 + DDA3937_RS01965 0.36 -0.4 439,841 + DDA3937_RS01965 0.36 -0.7 439,841 + DDA3937_RS01965 0.36 -0.1 439,842 - DDA3937_RS01965 0.36 +0.2 439,842 - DDA3937_RS01965 0.36 +0.2 439,842 - DDA3937_RS01965 0.36 +0.8 439,842 - DDA3937_RS01965 0.36 -0.3 439,894 + DDA3937_RS01965 0.41 -0.4 439,895 - DDA3937_RS01965 0.41 -0.7 439,939 + DDA3937_RS01965 0.45 -1.0 439,939 + DDA3937_RS01965 0.45 -0.7 439,940 - DDA3937_RS01965 0.45 -1.0 439,940 - DDA3937_RS01965 0.45 +1.2 439,940 - DDA3937_RS01965 0.45 +0.4 440,090 + DDA3937_RS01965 0.59 -0.3 440,090 + DDA3937_RS01965 0.59 +0.3 440,091 - DDA3937_RS01965 0.59 +1.4 440,091 - DDA3937_RS01965 0.59 -0.5 440,091 - DDA3937_RS01965 0.59 +0.2 440,134 + DDA3937_RS01965 0.63 +1.8 440,134 + DDA3937_RS01965 0.63 +0.7 440,135 - -1.1 440,135 - DDA3937_RS01965 0.63 +0.1 440,156 - DDA3937_RS01965 0.65 +1.4 440,166 - DDA3937_RS01965 0.66 -0.0 440,254 + DDA3937_RS01965 0.74 -0.2 440,255 - DDA3937_RS01965 0.74 -1.5 440,255 - DDA3937_RS01965 0.74 -0.1 440,258 + DDA3937_RS01965 0.75 +0.0 440,258 + DDA3937_RS01965 0.75 -0.9 440,258 + DDA3937_RS01965 0.75 +1.4 440,258 + DDA3937_RS01965 0.75 +1.7 440,258 + DDA3937_RS01965 0.75 +0.7 440,258 + DDA3937_RS01965 0.75 +0.2 440,283 - DDA3937_RS01965 0.77 -0.2 440,354 - DDA3937_RS01965 0.84 +0.0 440,431 + -0.7 440,431 + +1.1 440,431 + +0.8 440,432 - -1.8 440,482 + -0.1 440,521 + +0.6 440,521 + -0.6 440,521 + -1.0 440,521 + -0.0 440,521 + +0.2 440,521 + +0.1 440,521 + +2.3 440,521 + +0.0 440,522 - -0.6 440,590 + +0.0 440,591 - +0.4 440,591 - +0.5 440,617 + +0.3 440,618 - +0.4 440,645 + +0.3 440,645 + -0.2 440,646 - +0.4 440,649 - +0.8 440,668 + +0.0 440,669 - -0.0 440,669 - +0.0 440,704 + -0.2 440,705 - +0.3 440,705 - +0.2 440,707 + +0.2 440,707 + +0.0 440,707 + -1.0 440,708 - -0.2 440,708 - +0.3 440,708 - -0.3 440,708 - +0.4 440,779 + +0.0 440,779 + -1.2 440,780 - +0.3 440,780 - -0.2 440,871 + DDA3937_RS01970 0.12 +0.7 440,879 + DDA3937_RS01970 0.13 -2.0 440,879 + DDA3937_RS01970 0.13 -0.6 440,879 + DDA3937_RS01970 0.13 -0.2 440,987 + DDA3937_RS01970 0.20 -0.1 440,987 + DDA3937_RS01970 0.20 -0.3 440,988 - DDA3937_RS01970 0.20 +0.1 441,140 + DDA3937_RS01970 0.29 -1.3 441,140 + DDA3937_RS01970 0.29 -0.8 441,141 - DDA3937_RS01970 0.29 -0.0 441,179 + DDA3937_RS01970 0.31 +0.0 441,179 + DDA3937_RS01970 0.31 +0.1 441,180 - DDA3937_RS01970 0.32 -0.1 441,180 - DDA3937_RS01970 0.32 +0.3 441,180 - DDA3937_RS01970 0.32 +0.4 441,180 - DDA3937_RS01970 0.32 -0.2 441,180 - DDA3937_RS01970 0.32 +0.0 441,206 + DDA3937_RS01970 0.33 -0.9 441,206 + DDA3937_RS01970 0.33 -0.2 441,207 - DDA3937_RS01970 0.33 -0.8 441,207 - DDA3937_RS01970 0.33 -0.1 441,229 + DDA3937_RS01970 0.35 -1.6 441,235 + DDA3937_RS01970 0.35 +0.7 441,236 - DDA3937_RS01970 0.35 +0.2 441,236 - DDA3937_RS01970 0.35 +0.1 441,236 - DDA3937_RS01970 0.35 -1.4 441,299 - DDA3937_RS01970 0.39 +0.8 441,345 + DDA3937_RS01970 0.42 +0.1 441,346 - DDA3937_RS01970 0.42 +0.6 441,346 - DDA3937_RS01970 0.42 -0.1 441,346 - DDA3937_RS01970 0.42 +1.0 441,436 + DDA3937_RS01970 0.47 +1.0 441,436 + DDA3937_RS01970 0.47 -1.0 441,436 + DDA3937_RS01970 0.47 +1.2 441,436 + DDA3937_RS01970 0.47 -0.3 441,436 + DDA3937_RS01970 0.47 -0.1 441,437 - DDA3937_RS01970 0.47 -0.3 441,437 - DDA3937_RS01970 0.47 +0.4 441,437 - +2.0 441,437 - DDA3937_RS01970 0.47 -0.1 441,437 - DDA3937_RS01970 0.47 -1.0 441,437 - DDA3937_RS01970 0.47 -0.4 441,437 - DDA3937_RS01970 0.47 -0.6 441,457 + DDA3937_RS01970 0.49 +0.9 441,457 + DDA3937_RS01970 0.49 +0.2 441,458 - DDA3937_RS01970 0.49 -0.9 441,527 - DDA3937_RS01970 0.53 -1.3
Or see this region's nucleotide sequence