Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01970 and DDA3937_RS22980 are separated by 80 nucleotides DDA3937_RS22980 and DDA3937_RS01985 are separated by 144 nucleotides
DDA3937_RS01970: DDA3937_RS01970 - Tar ligand binding domain-containing protein, at 440,669 to 442,288
_RS01970
DDA3937_RS22980: DDA3937_RS22980 - IS3 family transposase, at 442,369 to 443,729
_RS22980
DDA3937_RS01985: DDA3937_RS01985 - valine--tRNA ligase, at 443,874 to 446,732
_RS01985
Position (kb) 442
443
444 Strain fitness (log2 ratio) -1
0
1 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.458 kb on - strand, within DDA3937_RS01970 at 441.527 kb on - strand, within DDA3937_RS01970 at 441.586 kb on + strand, within DDA3937_RS01970 at 441.586 kb on + strand, within DDA3937_RS01970 at 441.709 kb on + strand, within DDA3937_RS01970 at 441.722 kb on - strand, within DDA3937_RS01970 at 441.929 kb on - strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.069 kb on + strand, within DDA3937_RS01970 at 442.069 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand at 442.082 kb on - strand, within DDA3937_RS01970 at 442.082 kb on - strand, within DDA3937_RS01970 at 442.082 kb on - strand, within DDA3937_RS01970 at 442.293 kb on + strand at 442.293 kb on + strand at 442.294 kb on - strand at 442.294 kb on - strand at 442.294 kb on - strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.298 kb on - strand at 442.298 kb on - strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.305 kb on - strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.318 kb on + strand at 442.774 kb on - strand, within DDA3937_RS22980 at 442.890 kb on + strand, within DDA3937_RS22980 at 442.989 kb on + strand, within DDA3937_RS22980 at 443.528 kb on + strand, within DDA3937_RS22980 at 443.744 kb on + strand at 443.744 kb on + strand at 443.744 kb on + strand at 443.798 kb on - strand at 443.875 kb on + strand at 443.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 441,436 + DDA3937_RS01970 0.47 -0.1 441,436 + DDA3937_RS01970 0.47 -1.3 441,436 + DDA3937_RS01970 0.47 +0.4 441,436 + DDA3937_RS01970 0.47 -0.2 441,436 + DDA3937_RS01970 0.47 -0.1 441,437 - DDA3937_RS01970 0.47 -0.1 441,437 - DDA3937_RS01970 0.47 +1.5 441,437 - +1.3 441,437 - DDA3937_RS01970 0.47 -0.2 441,437 - DDA3937_RS01970 0.47 +0.1 441,437 - DDA3937_RS01970 0.47 +1.1 441,437 - DDA3937_RS01970 0.47 +0.3 441,457 + DDA3937_RS01970 0.49 -0.3 441,457 + DDA3937_RS01970 0.49 -0.3 441,458 - DDA3937_RS01970 0.49 -0.3 441,527 - DDA3937_RS01970 0.53 -1.1 441,586 + DDA3937_RS01970 0.57 +1.6 441,586 + DDA3937_RS01970 0.57 +1.3 441,709 + DDA3937_RS01970 0.64 +0.7 441,722 - DDA3937_RS01970 0.65 +0.3 441,929 - DDA3937_RS01970 0.78 +0.9 442,039 + DDA3937_RS01970 0.85 -0.9 442,039 + DDA3937_RS01970 0.85 +0.1 442,039 + DDA3937_RS01970 0.85 -0.3 442,039 + DDA3937_RS01970 0.85 -0.5 442,039 + DDA3937_RS01970 0.85 -0.9 442,039 + DDA3937_RS01970 0.85 -0.1 442,039 + DDA3937_RS01970 0.85 +0.3 442,040 - DDA3937_RS01970 0.85 +0.6 442,040 - DDA3937_RS01970 0.85 -1.6 442,040 - DDA3937_RS01970 0.85 +0.0 442,069 + DDA3937_RS01970 0.86 -0.3 442,069 + DDA3937_RS01970 0.86 -1.1 442,081 + DDA3937_RS01970 0.87 -0.3 442,081 + DDA3937_RS01970 0.87 +0.4 442,081 + DDA3937_RS01970 0.87 +1.3 442,081 + +1.7 442,082 - DDA3937_RS01970 0.87 -0.4 442,082 - DDA3937_RS01970 0.87 -0.1 442,082 - DDA3937_RS01970 0.87 +0.0 442,293 + -0.8 442,293 + -0.6 442,294 - -0.5 442,294 - -0.4 442,294 - -1.0 442,297 + -0.1 442,297 + +0.3 442,297 + +0.6 442,297 + -1.3 442,298 - -1.7 442,298 - -1.1 442,304 + +0.4 442,304 + -0.5 442,305 - -0.0 442,310 + +0.5 442,310 + -0.2 442,310 + +0.4 442,310 + -0.1 442,311 - -0.7 442,311 - +0.4 442,311 - -0.7 442,311 - +0.1 442,311 - +0.8 442,318 + -0.6 442,774 - DDA3937_RS22980 0.30 -1.1 442,890 + DDA3937_RS22980 0.38 +0.1 442,989 + DDA3937_RS22980 0.46 -0.2 443,528 + DDA3937_RS22980 0.85 -1.3 443,744 + -0.9 443,744 + -1.5 443,744 + +0.0 443,798 - -0.6 443,875 + -1.7 443,876 - +0.1
Or see this region's nucleotide sequence