Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21595 and DDA3937_RS21600 are separated by 620 nucleotides DDA3937_RS21600 and DDA3937_RS21605 are separated by 76 nucleotides
DDA3937_RS21595: DDA3937_RS21595 - F0F1 ATP synthase subunit I, at 4,918,864 to 4,919,247
_RS21595
DDA3937_RS21600: DDA3937_RS21600 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 4,919,868 to 4,920,488
_RS21600
DDA3937_RS21605: DDA3937_RS21605 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,920,565 to 4,922,454
_RS21605
Position (kb) 4919
4920
4921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4918.870 kb on - strand at 4918.870 kb on - strand at 4918.870 kb on - strand at 4918.882 kb on - strand at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand, within DDA3937_RS21595 at 4918.922 kb on - strand at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4918.926 kb on - strand, within DDA3937_RS21595 at 4919.084 kb on - strand, within DDA3937_RS21595 at 4919.084 kb on - strand, within DDA3937_RS21595 at 4919.240 kb on - strand at 4919.275 kb on - strand at 4919.275 kb on - strand at 4919.275 kb on - strand at 4919.292 kb on - strand at 4919.292 kb on - strand at 4919.370 kb on - strand at 4919.370 kb on - strand at 4919.373 kb on + strand at 4919.392 kb on + strand at 4919.396 kb on + strand at 4919.476 kb on + strand at 4919.477 kb on - strand at 4919.483 kb on + strand at 4919.484 kb on - strand at 4919.515 kb on - strand at 4919.516 kb on + strand at 4919.516 kb on + strand at 4919.665 kb on - strand at 4919.711 kb on - strand at 4919.741 kb on - strand at 4919.748 kb on + strand at 4919.748 kb on + strand at 4919.749 kb on - strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.750 kb on + strand at 4919.751 kb on - strand at 4919.751 kb on - strand at 4919.751 kb on - strand at 4919.764 kb on - strand at 4919.789 kb on - strand at 4919.800 kb on + strand at 4919.815 kb on + strand at 4919.816 kb on - strand at 4919.832 kb on + strand at 4919.838 kb on + strand at 4919.839 kb on - strand at 4919.839 kb on - strand at 4919.856 kb on + strand at 4919.856 kb on + strand at 4919.879 kb on + strand at 4919.879 kb on + strand at 4919.880 kb on - strand at 4919.880 kb on - strand at 4919.880 kb on - strand at 4920.001 kb on + strand, within DDA3937_RS21600 at 4920.001 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.246 kb on + strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.247 kb on - strand, within DDA3937_RS21600 at 4920.329 kb on + strand, within DDA3937_RS21600 at 4920.329 kb on + strand, within DDA3937_RS21600 at 4920.330 kb on - strand, within DDA3937_RS21600 at 4920.375 kb on - strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.376 kb on + strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.377 kb on - strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.399 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.409 kb on + strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.410 kb on - strand, within DDA3937_RS21600 at 4920.462 kb on + strand at 4920.462 kb on + strand at 4920.463 kb on - strand at 4920.463 kb on - strand at 4920.479 kb on + strand at 4920.549 kb on + strand at 4920.549 kb on + strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.550 kb on - strand at 4920.557 kb on - strand at 4920.585 kb on + strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.586 kb on - strand at 4920.801 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand, within DDA3937_RS21605 at 4920.803 kb on + strand at 4920.804 kb on - strand, within DDA3937_RS21605 at 4920.896 kb on + strand, within DDA3937_RS21605 at 4920.980 kb on - strand, within DDA3937_RS21605 at 4921.229 kb on + strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.230 kb on - strand, within DDA3937_RS21605 at 4921.415 kb on + strand at 4921.416 kb on - strand, within DDA3937_RS21605 at 4921.421 kb on + strand, within DDA3937_RS21605 at 4921.422 kb on - strand, within DDA3937_RS21605 at 4921.473 kb on + strand, within DDA3937_RS21605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,918,870 - -0.6 4,918,870 - -0.0 4,918,870 - -0.6 4,918,882 - +0.4 4,918,922 - DDA3937_RS21595 0.15 -1.2 4,918,922 - DDA3937_RS21595 0.15 -1.2 4,918,922 - DDA3937_RS21595 0.15 -0.4 4,918,922 - DDA3937_RS21595 0.15 -0.9 4,918,922 - DDA3937_RS21595 0.15 -0.6 4,918,922 - DDA3937_RS21595 0.15 +0.3 4,918,922 - -0.4 4,918,926 - DDA3937_RS21595 0.16 +0.8 4,918,926 - DDA3937_RS21595 0.16 +0.4 4,918,926 - DDA3937_RS21595 0.16 -1.4 4,918,926 - DDA3937_RS21595 0.16 -0.3 4,918,926 - DDA3937_RS21595 0.16 +0.6 4,918,926 - DDA3937_RS21595 0.16 -1.6 4,919,084 - DDA3937_RS21595 0.57 -0.0 4,919,084 - DDA3937_RS21595 0.57 +0.1 4,919,240 - -0.9 4,919,275 - -2.2 4,919,275 - -0.4 4,919,275 - -0.4 4,919,292 - -0.2 4,919,292 - -0.6 4,919,370 - +0.6 4,919,370 - -0.5 4,919,373 + +1.4 4,919,392 + +0.4 4,919,396 + +1.0 4,919,476 + +0.0 4,919,477 - +0.6 4,919,483 + -0.2 4,919,484 - +0.4 4,919,515 - +0.7 4,919,516 + +0.5 4,919,516 + -0.2 4,919,665 - -0.2 4,919,711 - +0.2 4,919,741 - -0.2 4,919,748 + +0.2 4,919,748 + +1.0 4,919,749 - +0.5 4,919,750 + -0.4 4,919,750 + -0.7 4,919,750 + -0.3 4,919,750 + -0.4 4,919,751 - +0.3 4,919,751 - +1.4 4,919,751 - +1.4 4,919,764 - +0.1 4,919,789 - +0.5 4,919,800 + -0.1 4,919,815 + -1.1 4,919,816 - -0.2 4,919,832 + -0.8 4,919,838 + +0.2 4,919,839 - +0.6 4,919,839 - -0.0 4,919,856 + +0.8 4,919,856 + -0.1 4,919,879 + -0.6 4,919,879 + -0.8 4,919,880 - +1.1 4,919,880 - +0.4 4,919,880 - -0.5 4,920,001 + DDA3937_RS21600 0.21 +0.3 4,920,001 + DDA3937_RS21600 0.21 -0.9 4,920,246 + DDA3937_RS21600 0.61 -0.0 4,920,246 + DDA3937_RS21600 0.61 +0.1 4,920,246 + DDA3937_RS21600 0.61 -0.7 4,920,247 - DDA3937_RS21600 0.61 -0.5 4,920,247 - DDA3937_RS21600 0.61 -0.7 4,920,247 - DDA3937_RS21600 0.61 -2.1 4,920,329 + DDA3937_RS21600 0.74 -1.6 4,920,329 + DDA3937_RS21600 0.74 -1.1 4,920,330 - DDA3937_RS21600 0.74 +0.7 4,920,375 - DDA3937_RS21600 0.82 -0.4 4,920,376 + DDA3937_RS21600 0.82 -0.6 4,920,376 + DDA3937_RS21600 0.82 -0.1 4,920,376 + DDA3937_RS21600 0.82 +0.8 4,920,376 + DDA3937_RS21600 0.82 -0.4 4,920,376 + DDA3937_RS21600 0.82 +0.4 4,920,376 + DDA3937_RS21600 0.82 +0.2 4,920,377 - DDA3937_RS21600 0.82 -1.1 4,920,377 - DDA3937_RS21600 0.82 -0.3 4,920,377 - DDA3937_RS21600 0.82 -1.4 4,920,377 - DDA3937_RS21600 0.82 +0.4 4,920,399 + DDA3937_RS21600 0.86 -1.0 4,920,399 + DDA3937_RS21600 0.86 -0.5 4,920,399 + DDA3937_RS21600 0.86 -0.1 4,920,409 + DDA3937_RS21600 0.87 -0.1 4,920,409 + DDA3937_RS21600 0.87 -0.4 4,920,409 + DDA3937_RS21600 0.87 -0.6 4,920,409 + DDA3937_RS21600 0.87 -0.6 4,920,410 - DDA3937_RS21600 0.87 -0.1 4,920,410 - DDA3937_RS21600 0.87 -2.7 4,920,410 - DDA3937_RS21600 0.87 +0.3 4,920,410 - DDA3937_RS21600 0.87 -0.6 4,920,410 - DDA3937_RS21600 0.87 -0.4 4,920,410 - DDA3937_RS21600 0.87 -0.8 4,920,410 - DDA3937_RS21600 0.87 +0.2 4,920,410 - DDA3937_RS21600 0.87 -1.3 4,920,410 - DDA3937_RS21600 0.87 +0.6 4,920,410 - DDA3937_RS21600 0.87 -0.6 4,920,410 - DDA3937_RS21600 0.87 +0.1 4,920,462 + -0.5 4,920,462 + +0.2 4,920,463 - -0.0 4,920,463 - -1.3 4,920,479 + -0.4 4,920,549 + -0.5 4,920,549 + +2.0 4,920,550 - -0.0 4,920,550 - -0.1 4,920,550 - +0.2 4,920,550 - -0.8 4,920,550 - -1.4 4,920,557 - -0.2 4,920,585 + +1.4 4,920,586 - -0.2 4,920,586 - -0.9 4,920,586 - +1.0 4,920,586 - -0.0 4,920,586 - +0.3 4,920,586 - -0.2 4,920,801 + DDA3937_RS21605 0.12 -0.2 4,920,803 + DDA3937_RS21605 0.13 -1.6 4,920,803 + DDA3937_RS21605 0.13 +1.4 4,920,803 + +1.4 4,920,803 + DDA3937_RS21605 0.13 -1.4 4,920,803 + DDA3937_RS21605 0.13 -2.1 4,920,803 + -1.4 4,920,804 - DDA3937_RS21605 0.13 +0.1 4,920,896 + DDA3937_RS21605 0.18 -0.6 4,920,980 - DDA3937_RS21605 0.22 -1.2 4,921,229 + DDA3937_RS21605 0.35 +0.5 4,921,230 - DDA3937_RS21605 0.35 +2.4 4,921,230 - DDA3937_RS21605 0.35 +1.4 4,921,230 - DDA3937_RS21605 0.35 +2.0 4,921,230 - DDA3937_RS21605 0.35 -0.9 4,921,415 + -0.2 4,921,416 - DDA3937_RS21605 0.45 -0.6 4,921,421 + DDA3937_RS21605 0.45 -0.2 4,921,422 - DDA3937_RS21605 0.45 -2.2 4,921,473 + DDA3937_RS21605 0.48 -0.6
Or see this region's nucleotide sequence