Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20960 and DDA3937_RS20965 are separated by 390 nucleotides DDA3937_RS20965 and DDA3937_RS20970 are separated by 120 nucleotides DDA3937_RS20970 and DDA3937_RS20975 are separated by 159 nucleotides
DDA3937_RS20960: DDA3937_RS20960 - superoxide dismutase [Mn], at 4,766,357 to 4,766,983
_RS20960
DDA3937_RS20965: DDA3937_RS20965 - methyl-accepting chemotaxis protein, at 4,767,374 to 4,769,260
_RS20965
DDA3937_RS20970: DDA3937_RS20970 - mannitol operon repressor, at 4,769,381 to 4,769,911
_RS20970
DDA3937_RS20975: DDA3937_RS20975 - mannitol-1-phosphate 5-dehydrogenase, at 4,770,071 to 4,771,219
_RS20975
Position (kb) 4767
4768
4769
4770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4766.459 kb on + strand, within DDA3937_RS20960 at 4766.460 kb on - strand, within DDA3937_RS20960 at 4766.865 kb on + strand, within DDA3937_RS20960 at 4766.918 kb on - strand, within DDA3937_RS20960 at 4766.981 kb on + strand at 4766.985 kb on + strand at 4766.985 kb on + strand at 4766.985 kb on + strand at 4766.986 kb on - strand at 4766.986 kb on - strand at 4767.018 kb on - strand at 4767.064 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.073 kb on - strand at 4767.073 kb on - strand at 4767.073 kb on - strand at 4767.076 kb on + strand at 4767.076 kb on + strand at 4767.076 kb on + strand at 4767.077 kb on - strand at 4767.077 kb on - strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.121 kb on - strand at 4767.121 kb on - strand at 4767.131 kb on + strand at 4767.163 kb on - strand at 4767.173 kb on - strand at 4767.175 kb on - strand at 4767.224 kb on - strand at 4767.224 kb on - strand at 4767.225 kb on + strand at 4767.234 kb on - strand at 4767.236 kb on + strand at 4767.237 kb on - strand at 4767.250 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.323 kb on + strand at 4767.324 kb on - strand at 4767.324 kb on - strand at 4767.326 kb on + strand at 4767.326 kb on + strand at 4767.327 kb on - strand at 4767.335 kb on + strand at 4767.335 kb on + strand at 4767.336 kb on - strand at 4767.352 kb on + strand at 4767.357 kb on - strand at 4767.381 kb on + strand at 4767.421 kb on - strand at 4767.476 kb on + strand at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.570 kb on - strand, within DDA3937_RS20965 at 4767.570 kb on - strand, within DDA3937_RS20965 at 4767.571 kb on + strand, within DDA3937_RS20965 at 4767.572 kb on - strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.577 kb on - strand, within DDA3937_RS20965 at 4767.581 kb on + strand, within DDA3937_RS20965 at 4767.581 kb on + strand, within DDA3937_RS20965 at 4767.582 kb on - strand, within DDA3937_RS20965 at 4767.632 kb on - strand, within DDA3937_RS20965 at 4767.655 kb on + strand, within DDA3937_RS20965 at 4767.675 kb on - strand, within DDA3937_RS20965 at 4767.675 kb on - strand, within DDA3937_RS20965 at 4767.718 kb on + strand, within DDA3937_RS20965 at 4767.718 kb on + strand, within DDA3937_RS20965 at 4767.719 kb on - strand, within DDA3937_RS20965 at 4767.719 kb on - strand, within DDA3937_RS20965 at 4767.737 kb on + strand, within DDA3937_RS20965 at 4767.738 kb on - strand, within DDA3937_RS20965 at 4767.740 kb on - strand, within DDA3937_RS20965 at 4767.846 kb on + strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.859 kb on - strand, within DDA3937_RS20965 at 4767.859 kb on - strand, within DDA3937_RS20965 at 4767.988 kb on + strand, within DDA3937_RS20965 at 4768.032 kb on + strand, within DDA3937_RS20965 at 4768.039 kb on + strand, within DDA3937_RS20965 at 4768.052 kb on + strand, within DDA3937_RS20965 at 4768.053 kb on - strand, within DDA3937_RS20965 at 4768.065 kb on + strand, within DDA3937_RS20965 at 4768.066 kb on - strand, within DDA3937_RS20965 at 4768.066 kb on - strand, within DDA3937_RS20965 at 4768.074 kb on - strand, within DDA3937_RS20965 at 4768.085 kb on + strand, within DDA3937_RS20965 at 4768.137 kb on + strand, within DDA3937_RS20965 at 4768.144 kb on + strand, within DDA3937_RS20965 at 4768.145 kb on - strand, within DDA3937_RS20965 at 4768.145 kb on - strand, within DDA3937_RS20965 at 4768.193 kb on - strand, within DDA3937_RS20965 at 4768.235 kb on - strand, within DDA3937_RS20965 at 4768.242 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.300 kb on + strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.322 kb on - strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.385 kb on + strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.991 kb on - strand, within DDA3937_RS20965 at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.250 kb on - strand at 4769.250 kb on - strand at 4769.252 kb on - strand at 4769.252 kb on - strand at 4769.364 kb on + strand at 4769.364 kb on + strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.413 kb on + strand at 4769.414 kb on - strand at 4769.647 kb on + strand at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.766 kb on + strand, within DDA3937_RS20970 at 4769.767 kb on - strand, within DDA3937_RS20970 at 4769.820 kb on - strand, within DDA3937_RS20970 at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.925 kb on - strand at 4769.930 kb on - strand at 4770.012 kb on - strand at 4770.072 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,766,459 + DDA3937_RS20960 0.16 -0.6 4,766,460 - DDA3937_RS20960 0.16 -1.9 4,766,865 + DDA3937_RS20960 0.81 +2.0 4,766,918 - DDA3937_RS20960 0.89 +0.5 4,766,981 + -0.9 4,766,985 + +1.4 4,766,985 + +0.0 4,766,985 + -0.4 4,766,986 - +1.3 4,766,986 - +0.2 4,767,018 - -0.3 4,767,064 + -1.3 4,767,072 + -1.9 4,767,072 + -0.8 4,767,072 + -0.5 4,767,072 + +0.1 4,767,073 - -0.4 4,767,073 - -0.4 4,767,073 - -0.6 4,767,076 + -0.5 4,767,076 + -0.9 4,767,076 + +0.3 4,767,077 - -0.2 4,767,077 - -0.4 4,767,120 + +0.6 4,767,120 + +0.8 4,767,120 + +0.0 4,767,120 + -1.2 4,767,120 + -0.6 4,767,121 - -0.5 4,767,121 - -1.9 4,767,131 + +0.6 4,767,163 - +0.2 4,767,173 - -0.4 4,767,175 - -0.9 4,767,224 - -0.2 4,767,224 - -0.2 4,767,225 + +1.4 4,767,234 - -0.6 4,767,236 + +0.8 4,767,237 - -0.6 4,767,250 - +0.4 4,767,272 - -0.1 4,767,272 - -0.4 4,767,272 - +0.8 4,767,272 - -1.1 4,767,323 + -0.9 4,767,324 - +0.7 4,767,324 - +1.1 4,767,326 + -0.3 4,767,326 + -0.9 4,767,327 - +0.7 4,767,335 + -1.3 4,767,335 + -0.8 4,767,336 - +0.4 4,767,352 + +0.2 4,767,357 - -0.3 4,767,381 + +0.2 4,767,421 - +0.2 4,767,476 + +0.8 4,767,569 + DDA3937_RS20965 0.10 -0.8 4,767,569 + DDA3937_RS20965 0.10 +1.2 4,767,569 + DDA3937_RS20965 0.10 -0.0 4,767,570 - DDA3937_RS20965 0.10 +0.2 4,767,570 - DDA3937_RS20965 0.10 -2.6 4,767,571 + DDA3937_RS20965 0.10 +1.4 4,767,572 - DDA3937_RS20965 0.10 +0.1 4,767,576 + DDA3937_RS20965 0.11 +0.2 4,767,576 + DDA3937_RS20965 0.11 +0.1 4,767,576 + DDA3937_RS20965 0.11 -1.1 4,767,576 + DDA3937_RS20965 0.11 +0.1 4,767,577 - DDA3937_RS20965 0.11 -0.7 4,767,581 + DDA3937_RS20965 0.11 -0.2 4,767,581 + DDA3937_RS20965 0.11 +0.1 4,767,582 - DDA3937_RS20965 0.11 +1.2 4,767,632 - DDA3937_RS20965 0.14 +0.6 4,767,655 + DDA3937_RS20965 0.15 +0.6 4,767,675 - DDA3937_RS20965 0.16 -0.2 4,767,675 - DDA3937_RS20965 0.16 +1.4 4,767,718 + DDA3937_RS20965 0.18 -0.9 4,767,718 + DDA3937_RS20965 0.18 -0.5 4,767,719 - DDA3937_RS20965 0.18 +1.2 4,767,719 - DDA3937_RS20965 0.18 -0.7 4,767,737 + DDA3937_RS20965 0.19 +1.1 4,767,738 - DDA3937_RS20965 0.19 +1.4 4,767,740 - DDA3937_RS20965 0.19 +1.0 4,767,846 + DDA3937_RS20965 0.25 +0.3 4,767,847 - DDA3937_RS20965 0.25 +0.6 4,767,847 - DDA3937_RS20965 0.25 +0.1 4,767,847 - DDA3937_RS20965 0.25 +0.1 4,767,847 - DDA3937_RS20965 0.25 +0.7 4,767,858 + DDA3937_RS20965 0.26 -0.2 4,767,858 + DDA3937_RS20965 0.26 +0.9 4,767,858 + DDA3937_RS20965 0.26 -1.1 4,767,859 - DDA3937_RS20965 0.26 -0.3 4,767,859 - DDA3937_RS20965 0.26 -0.4 4,767,988 + DDA3937_RS20965 0.33 +0.1 4,768,032 + DDA3937_RS20965 0.35 -1.2 4,768,039 + DDA3937_RS20965 0.35 +0.2 4,768,052 + DDA3937_RS20965 0.36 +0.1 4,768,053 - DDA3937_RS20965 0.36 -1.0 4,768,065 + DDA3937_RS20965 0.37 -1.3 4,768,066 - DDA3937_RS20965 0.37 -0.1 4,768,066 - DDA3937_RS20965 0.37 +0.7 4,768,074 - DDA3937_RS20965 0.37 +0.6 4,768,085 + DDA3937_RS20965 0.38 -0.1 4,768,137 + DDA3937_RS20965 0.40 +0.2 4,768,144 + DDA3937_RS20965 0.41 -0.2 4,768,145 - DDA3937_RS20965 0.41 +0.3 4,768,145 - DDA3937_RS20965 0.41 -1.8 4,768,193 - DDA3937_RS20965 0.43 -1.6 4,768,235 - DDA3937_RS20965 0.46 +0.1 4,768,242 + DDA3937_RS20965 0.46 +0.0 4,768,265 + DDA3937_RS20965 0.47 +0.8 4,768,265 + DDA3937_RS20965 0.47 +0.1 4,768,265 + DDA3937_RS20965 0.47 -0.2 4,768,265 + DDA3937_RS20965 0.47 +0.2 4,768,265 + DDA3937_RS20965 0.47 +0.4 4,768,265 + DDA3937_RS20965 0.47 -0.2 4,768,265 + DDA3937_RS20965 0.47 +0.4 4,768,265 + DDA3937_RS20965 0.47 +1.4 4,768,265 + DDA3937_RS20965 0.47 -0.5 4,768,265 + DDA3937_RS20965 0.47 -0.4 4,768,265 + DDA3937_RS20965 0.47 -0.1 4,768,265 + DDA3937_RS20965 0.47 +1.5 4,768,266 - DDA3937_RS20965 0.47 +1.2 4,768,266 - DDA3937_RS20965 0.47 +0.3 4,768,266 - DDA3937_RS20965 0.47 -0.1 4,768,266 - DDA3937_RS20965 0.47 +0.1 4,768,266 - DDA3937_RS20965 0.47 -0.2 4,768,266 - DDA3937_RS20965 0.47 +0.2 4,768,267 + DDA3937_RS20965 0.47 +0.1 4,768,267 + DDA3937_RS20965 0.47 -0.7 4,768,267 + DDA3937_RS20965 0.47 -0.3 4,768,267 + DDA3937_RS20965 0.47 +1.2 4,768,268 - DDA3937_RS20965 0.47 -0.2 4,768,268 - DDA3937_RS20965 0.47 +0.6 4,768,268 - DDA3937_RS20965 0.47 +0.2 4,768,300 + DDA3937_RS20965 0.49 +0.6 4,768,301 - DDA3937_RS20965 0.49 +0.3 4,768,301 - DDA3937_RS20965 0.49 -0.1 4,768,301 - DDA3937_RS20965 0.49 +1.0 4,768,301 - DDA3937_RS20965 0.49 +1.8 4,768,322 - DDA3937_RS20965 0.50 -0.5 4,768,342 + DDA3937_RS20965 0.51 -0.2 4,768,342 + DDA3937_RS20965 0.51 -0.6 4,768,342 + DDA3937_RS20965 0.51 -0.3 4,768,343 - DDA3937_RS20965 0.51 -0.6 4,768,343 - DDA3937_RS20965 0.51 -0.6 4,768,343 - DDA3937_RS20965 0.51 +0.1 4,768,343 - DDA3937_RS20965 0.51 +0.5 4,768,343 - DDA3937_RS20965 0.51 +0.1 4,768,385 + DDA3937_RS20965 0.54 +0.5 4,768,386 - DDA3937_RS20965 0.54 -0.2 4,768,386 - DDA3937_RS20965 0.54 -0.3 4,768,386 - DDA3937_RS20965 0.54 -0.1 4,768,991 - DDA3937_RS20965 0.86 -0.5 4,769,249 + +1.2 4,769,249 + -0.7 4,769,249 + -2.2 4,769,249 + +0.5 4,769,249 + +0.4 4,769,249 + -0.4 4,769,250 - -0.1 4,769,250 - +0.5 4,769,252 - +0.1 4,769,252 - +0.4 4,769,364 + -0.0 4,769,364 + -0.2 4,769,365 - -0.5 4,769,365 - -0.6 4,769,365 - -0.5 4,769,413 + -0.6 4,769,414 - +0.8 4,769,647 + -0.6 4,769,685 + DDA3937_RS20970 0.57 +0.2 4,769,685 + DDA3937_RS20970 0.57 +0.4 4,769,686 - DDA3937_RS20970 0.57 -0.1 4,769,686 - DDA3937_RS20970 0.57 -1.3 4,769,686 - DDA3937_RS20970 0.57 -0.1 4,769,754 + DDA3937_RS20970 0.70 -0.4 4,769,754 + DDA3937_RS20970 0.70 -0.6 4,769,766 + DDA3937_RS20970 0.73 -1.1 4,769,767 - DDA3937_RS20970 0.73 +1.4 4,769,820 - DDA3937_RS20970 0.83 -0.8 4,769,924 + -0.4 4,769,924 + -0.1 4,769,924 + +0.4 4,769,924 + +0.4 4,769,925 - +1.1 4,769,930 - +0.9 4,770,012 - +2.4 4,770,072 + -2.2 4,770,087 + -1.2 4,770,087 + -0.6 4,770,087 + +0.1 4,770,087 + -0.6 4,770,088 - -0.7 4,770,088 - -0.6 4,770,088 - -0.6 4,770,088 - -0.4 4,770,088 - -0.4 4,770,088 - -0.8
Or see this region's nucleotide sequence