Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20560

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS20555 and DDA3937_RS20560 are separated by 4 nucleotidesDDA3937_RS20560 and DDA3937_RS20565 are separated by 20 nucleotides DDA3937_RS20555: DDA3937_RS20555 - DUF1611 domain-containing protein, at 4,675,391 to 4,676,398 _RS20555 DDA3937_RS20560: DDA3937_RS20560 - L-Ala-D/L-Glu epimerase, at 4,676,403 to 4,677,368 _RS20560 DDA3937_RS20565: DDA3937_RS20565 - ABC transporter ATP-binding protein, at 4,677,389 to 4,679,287 _RS20565 Position (kb) 4676 4677 4678Strain fitness (log2 ratio) -2 -1 0 1 2at 4675.409 kb on + strandat 4675.409 kb on + strandat 4675.409 kb on + strandat 4675.410 kb on - strandat 4675.410 kb on - strandat 4675.495 kb on - strand, within DDA3937_RS20555at 4675.495 kb on - strand, within DDA3937_RS20555at 4675.495 kb on - strand, within DDA3937_RS20555at 4675.549 kb on + strand, within DDA3937_RS20555at 4675.740 kb on + strand, within DDA3937_RS20555at 4675.740 kb on + strand, within DDA3937_RS20555at 4675.740 kb on + strand, within DDA3937_RS20555at 4675.741 kb on - strandat 4675.741 kb on - strand, within DDA3937_RS20555at 4675.741 kb on - strand, within DDA3937_RS20555at 4675.741 kb on - strand, within DDA3937_RS20555at 4675.762 kb on + strand, within DDA3937_RS20555at 4675.762 kb on + strand, within DDA3937_RS20555at 4675.762 kb on + strand, within DDA3937_RS20555at 4675.763 kb on - strand, within DDA3937_RS20555at 4675.763 kb on - strand, within DDA3937_RS20555at 4675.763 kb on - strand, within DDA3937_RS20555at 4675.853 kb on + strand, within DDA3937_RS20555at 4675.853 kb on + strand, within DDA3937_RS20555at 4675.853 kb on + strand, within DDA3937_RS20555at 4675.853 kb on + strand, within DDA3937_RS20555at 4675.854 kb on - strand, within DDA3937_RS20555at 4676.072 kb on + strand, within DDA3937_RS20555at 4676.073 kb on - strand, within DDA3937_RS20555at 4676.095 kb on + strand, within DDA3937_RS20555at 4676.096 kb on - strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.241 kb on + strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.242 kb on - strand, within DDA3937_RS20555at 4676.266 kb on + strand, within DDA3937_RS20555at 4676.266 kb on + strand, within DDA3937_RS20555at 4676.266 kb on + strand, within DDA3937_RS20555at 4676.266 kb on + strand, within DDA3937_RS20555at 4676.266 kb on + strand, within DDA3937_RS20555at 4676.267 kb on - strand, within DDA3937_RS20555at 4676.267 kb on - strand, within DDA3937_RS20555at 4676.267 kb on - strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.276 kb on + strand, within DDA3937_RS20555at 4676.277 kb on - strand, within DDA3937_RS20555at 4676.277 kb on - strand, within DDA3937_RS20555at 4676.277 kb on - strand, within DDA3937_RS20555at 4676.277 kb on - strand, within DDA3937_RS20555at 4676.277 kb on - strand, within DDA3937_RS20555at 4676.474 kb on + strandat 4676.609 kb on - strand, within DDA3937_RS20560at 4677.090 kb on + strand, within DDA3937_RS20560at 4677.091 kb on - strand, within DDA3937_RS20560at 4677.201 kb on + strand, within DDA3937_RS20560at 4677.333 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.342 kb on + strandat 4677.343 kb on - strandat 4677.343 kb on - strandat 4677.343 kb on - strandat 4677.344 kb on + strandat 4677.376 kb on + strandat 4677.784 kb on - strand, within DDA3937_RS20565at 4677.784 kb on - strand, within DDA3937_RS20565at 4677.868 kb on + strand, within DDA3937_RS20565at 4677.869 kb on - strand, within DDA3937_RS20565at 4677.908 kb on + strand, within DDA3937_RS20565at 4677.909 kb on - strand, within DDA3937_RS20565at 4678.024 kb on - strand, within DDA3937_RS20565at 4678.142 kb on + strand, within DDA3937_RS20565at 4678.143 kb on - strand, within DDA3937_RS20565at 4678.143 kb on - strand, within DDA3937_RS20565at 4678.143 kb on - strand, within DDA3937_RS20565at 4678.143 kb on - strand, within DDA3937_RS20565at 4678.143 kb on - strand, within DDA3937_RS20565at 4678.205 kb on + strand, within DDA3937_RS20565at 4678.205 kb on + strand, within DDA3937_RS20565at 4678.205 kb on + strand, within DDA3937_RS20565at 4678.205 kb on + strand, within DDA3937_RS20565at 4678.205 kb on + strand, within DDA3937_RS20565at 4678.206 kb on - strand, within DDA3937_RS20565at 4678.206 kb on - strand, within DDA3937_RS20565at 4678.267 kb on + strand, within DDA3937_RS20565at 4678.318 kb on + strand, within DDA3937_RS20565at 4678.319 kb on - strand, within DDA3937_RS20565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,675,409 + +1.0
4,675,409 + -0.2
4,675,409 + -0.2
4,675,410 - +1.7
4,675,410 - +0.4
4,675,495 - DDA3937_RS20555 0.10 -0.3
4,675,495 - DDA3937_RS20555 0.10 +0.2
4,675,495 - DDA3937_RS20555 0.10 -0.3
4,675,549 + DDA3937_RS20555 0.16 +0.5
4,675,740 + DDA3937_RS20555 0.35 -1.8
4,675,740 + DDA3937_RS20555 0.35 +0.5
4,675,740 + DDA3937_RS20555 0.35 -0.3
4,675,741 - -0.6
4,675,741 - DDA3937_RS20555 0.35 -0.1
4,675,741 - DDA3937_RS20555 0.35 -0.4
4,675,741 - DDA3937_RS20555 0.35 -0.8
4,675,762 + DDA3937_RS20555 0.37 +0.4
4,675,762 + DDA3937_RS20555 0.37 -0.3
4,675,762 + DDA3937_RS20555 0.37 -0.4
4,675,763 - DDA3937_RS20555 0.37 -0.5
4,675,763 - DDA3937_RS20555 0.37 +0.1
4,675,763 - DDA3937_RS20555 0.37 -1.3
4,675,853 + DDA3937_RS20555 0.46 +0.1
4,675,853 + DDA3937_RS20555 0.46 +1.1
4,675,853 + DDA3937_RS20555 0.46 -0.7
4,675,853 + DDA3937_RS20555 0.46 +0.1
4,675,854 - DDA3937_RS20555 0.46 -0.5
4,676,072 + DDA3937_RS20555 0.68 -0.2
4,676,073 - DDA3937_RS20555 0.68 -0.2
4,676,095 + DDA3937_RS20555 0.70 -1.7
4,676,096 - DDA3937_RS20555 0.70 +0.1
4,676,241 + DDA3937_RS20555 0.84 +0.1
4,676,241 + DDA3937_RS20555 0.84 -0.4
4,676,241 + DDA3937_RS20555 0.84 +0.8
4,676,241 + DDA3937_RS20555 0.84 +0.9
4,676,241 + DDA3937_RS20555 0.84 -0.7
4,676,241 + DDA3937_RS20555 0.84 -0.6
4,676,241 + DDA3937_RS20555 0.84 -1.2
4,676,242 - DDA3937_RS20555 0.84 -1.2
4,676,242 - DDA3937_RS20555 0.84 +0.4
4,676,242 - DDA3937_RS20555 0.84 +0.1
4,676,242 - DDA3937_RS20555 0.84 +1.4
4,676,242 - DDA3937_RS20555 0.84 +0.7
4,676,242 - DDA3937_RS20555 0.84 +2.2
4,676,242 - DDA3937_RS20555 0.84 +0.2
4,676,242 - DDA3937_RS20555 0.84 +0.8
4,676,242 - DDA3937_RS20555 0.84 +0.6
4,676,242 - DDA3937_RS20555 0.84 -0.3
4,676,266 + DDA3937_RS20555 0.87 -1.1
4,676,266 + DDA3937_RS20555 0.87 +1.9
4,676,266 + DDA3937_RS20555 0.87 -0.4
4,676,266 + DDA3937_RS20555 0.87 +0.2
4,676,266 + DDA3937_RS20555 0.87 -0.4
4,676,267 - DDA3937_RS20555 0.87 -1.6
4,676,267 - DDA3937_RS20555 0.87 +0.4
4,676,267 - DDA3937_RS20555 0.87 -0.1
4,676,276 + DDA3937_RS20555 0.88 +0.2
4,676,276 + DDA3937_RS20555 0.88 -1.5
4,676,276 + DDA3937_RS20555 0.88 +2.4
4,676,276 + DDA3937_RS20555 0.88 -0.9
4,676,276 + DDA3937_RS20555 0.88 -0.6
4,676,276 + DDA3937_RS20555 0.88 -0.9
4,676,276 + DDA3937_RS20555 0.88 +0.8
4,676,277 - DDA3937_RS20555 0.88 +0.9
4,676,277 - DDA3937_RS20555 0.88 -0.2
4,676,277 - DDA3937_RS20555 0.88 -0.3
4,676,277 - DDA3937_RS20555 0.88 +0.7
4,676,277 - DDA3937_RS20555 0.88 -0.7
4,676,474 + -0.4
4,676,609 - DDA3937_RS20560 0.21 +0.8
4,677,090 + DDA3937_RS20560 0.71 -2.0
4,677,091 - DDA3937_RS20560 0.71 +0.0
4,677,201 + DDA3937_RS20560 0.83 -0.2
4,677,333 + -0.8
4,677,342 + -0.2
4,677,342 + -2.2
4,677,342 + -1.9
4,677,342 + -0.8
4,677,342 + +0.0
4,677,342 + -0.4
4,677,342 + -0.5
4,677,342 + -0.9
4,677,342 + +0.4
4,677,342 + -0.2
4,677,342 + -1.3
4,677,342 + +0.1
4,677,343 - +0.5
4,677,343 - -0.4
4,677,343 - +0.1
4,677,344 + -0.5
4,677,376 + +0.5
4,677,784 - DDA3937_RS20565 0.21 -0.1
4,677,784 - DDA3937_RS20565 0.21 -0.3
4,677,868 + DDA3937_RS20565 0.25 -0.3
4,677,869 - DDA3937_RS20565 0.25 -0.2
4,677,908 + DDA3937_RS20565 0.27 +1.7
4,677,909 - DDA3937_RS20565 0.27 +1.7
4,678,024 - DDA3937_RS20565 0.33 +0.3
4,678,142 + DDA3937_RS20565 0.40 +1.4
4,678,143 - DDA3937_RS20565 0.40 -0.4
4,678,143 - DDA3937_RS20565 0.40 -0.8
4,678,143 - DDA3937_RS20565 0.40 +0.2
4,678,143 - DDA3937_RS20565 0.40 +0.0
4,678,143 - DDA3937_RS20565 0.40 +0.5
4,678,205 + DDA3937_RS20565 0.43 -0.7
4,678,205 + DDA3937_RS20565 0.43 +0.1
4,678,205 + DDA3937_RS20565 0.43 +0.8
4,678,205 + DDA3937_RS20565 0.43 +0.3
4,678,205 + DDA3937_RS20565 0.43 -0.4
4,678,206 - DDA3937_RS20565 0.43 -0.0
4,678,206 - DDA3937_RS20565 0.43 -0.2
4,678,267 + DDA3937_RS20565 0.46 -0.6
4,678,318 + DDA3937_RS20565 0.49 +0.2
4,678,319 - DDA3937_RS20565 0.49 +0.7

Or see this region's nucleotide sequence