Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20015 and DDA3937_RS20020 are separated by 320 nucleotides DDA3937_RS20020 and DDA3937_RS20025 overlap by 4 nucleotides
DDA3937_RS20015: DDA3937_RS20015 - amino acid permease, at 4,554,144 to 4,555,538
_RS20015
DDA3937_RS20020: DDA3937_RS20020 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 4,555,859 to 4,556,596
_RS20020
DDA3937_RS20025: DDA3937_RS20025 - ECA oligosaccharide polymerase, at 4,556,593 to 4,557,933
_RS20025
Position (kb) 4555
4556
4557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4554.896 kb on - strand, within DDA3937_RS20015 at 4555.097 kb on - strand, within DDA3937_RS20015 at 4555.097 kb on - strand, within DDA3937_RS20015 at 4555.184 kb on - strand, within DDA3937_RS20015 at 4555.192 kb on + strand, within DDA3937_RS20015 at 4555.192 kb on + strand, within DDA3937_RS20015 at 4555.192 kb on + strand, within DDA3937_RS20015 at 4555.192 kb on + strand, within DDA3937_RS20015 at 4555.193 kb on - strand, within DDA3937_RS20015 at 4555.193 kb on - strand, within DDA3937_RS20015 at 4555.209 kb on - strand, within DDA3937_RS20015 at 4555.239 kb on - strand, within DDA3937_RS20015 at 4555.239 kb on - strand, within DDA3937_RS20015 at 4555.264 kb on + strand, within DDA3937_RS20015 at 4555.285 kb on + strand, within DDA3937_RS20015 at 4555.286 kb on - strand, within DDA3937_RS20015 at 4555.286 kb on - strand, within DDA3937_RS20015 at 4555.297 kb on + strand, within DDA3937_RS20015 at 4555.386 kb on - strand, within DDA3937_RS20015 at 4555.387 kb on + strand, within DDA3937_RS20015 at 4555.387 kb on + strand, within DDA3937_RS20015 at 4555.387 kb on + strand, within DDA3937_RS20015 at 4555.387 kb on + strand, within DDA3937_RS20015 at 4555.387 kb on + strand, within DDA3937_RS20015 at 4555.388 kb on - strand, within DDA3937_RS20015 at 4555.388 kb on - strand, within DDA3937_RS20015 at 4555.475 kb on + strand at 4555.484 kb on + strand at 4555.484 kb on + strand at 4555.485 kb on - strand at 4555.485 kb on - strand at 4555.529 kb on + strand at 4555.529 kb on + strand at 4555.529 kb on + strand at 4555.530 kb on - strand at 4555.538 kb on + strand at 4555.539 kb on - strand at 4555.539 kb on - strand at 4555.539 kb on - strand at 4555.539 kb on - strand at 4555.539 kb on - strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.540 kb on + strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.541 kb on - strand at 4555.587 kb on + strand at 4555.595 kb on + strand at 4555.595 kb on + strand at 4555.595 kb on + strand at 4555.595 kb on + strand at 4555.596 kb on - strand at 4555.596 kb on - strand at 4555.597 kb on + strand at 4555.619 kb on + strand at 4555.620 kb on - strand at 4555.622 kb on - strand at 4555.622 kb on - strand at 4555.703 kb on + strand at 4555.704 kb on - strand at 4555.704 kb on - strand at 4555.704 kb on - strand at 4555.732 kb on + strand at 4555.764 kb on + strand at 4555.764 kb on + strand at 4555.784 kb on + strand at 4555.784 kb on + strand at 4555.825 kb on + strand at 4555.825 kb on + strand at 4555.825 kb on + strand at 4555.826 kb on - strand at 4556.013 kb on + strand, within DDA3937_RS20020 at 4556.013 kb on + strand, within DDA3937_RS20020 at 4556.013 kb on + strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.014 kb on - strand, within DDA3937_RS20020 at 4556.017 kb on + strand, within DDA3937_RS20020 at 4556.018 kb on - strand, within DDA3937_RS20020 at 4556.018 kb on - strand, within DDA3937_RS20020 at 4556.018 kb on - strand, within DDA3937_RS20020 at 4556.018 kb on - strand, within DDA3937_RS20020 at 4556.032 kb on + strand, within DDA3937_RS20020 at 4556.034 kb on + strand, within DDA3937_RS20020 at 4556.034 kb on + strand, within DDA3937_RS20020 at 4556.034 kb on + strand, within DDA3937_RS20020 at 4556.034 kb on + strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.035 kb on - strand, within DDA3937_RS20020 at 4556.049 kb on + strand, within DDA3937_RS20020 at 4556.251 kb on + strand, within DDA3937_RS20020 at 4556.353 kb on - strand, within DDA3937_RS20020 at 4556.394 kb on + strand, within DDA3937_RS20020 at 4556.394 kb on + strand, within DDA3937_RS20020 at 4556.395 kb on - strand, within DDA3937_RS20020 at 4556.395 kb on - strand, within DDA3937_RS20020 at 4556.574 kb on + strand at 4556.658 kb on - strand at 4556.957 kb on + strand, within DDA3937_RS20025 at 4556.957 kb on + strand, within DDA3937_RS20025 at 4556.958 kb on - strand, within DDA3937_RS20025 at 4556.958 kb on - strand, within DDA3937_RS20025 at 4556.981 kb on + strand at 4556.981 kb on + strand, within DDA3937_RS20025 at 4556.981 kb on + strand, within DDA3937_RS20025 at 4556.981 kb on + strand, within DDA3937_RS20025 at 4556.981 kb on + strand, within DDA3937_RS20025 at 4556.982 kb on - strand, within DDA3937_RS20025 at 4556.982 kb on - strand, within DDA3937_RS20025 at 4556.982 kb on - strand, within DDA3937_RS20025 at 4556.994 kb on + strand at 4556.995 kb on - strand, within DDA3937_RS20025 at 4557.044 kb on + strand, within DDA3937_RS20025 at 4557.044 kb on + strand, within DDA3937_RS20025 at 4557.044 kb on + strand, within DDA3937_RS20025 at 4557.044 kb on + strand, within DDA3937_RS20025 at 4557.076 kb on + strand, within DDA3937_RS20025 at 4557.077 kb on - strand, within DDA3937_RS20025 at 4557.103 kb on + strand, within DDA3937_RS20025 at 4557.135 kb on + strand, within DDA3937_RS20025 at 4557.135 kb on + strand, within DDA3937_RS20025 at 4557.161 kb on + strand, within DDA3937_RS20025 at 4557.161 kb on + strand, within DDA3937_RS20025 at 4557.162 kb on - strand, within DDA3937_RS20025 at 4557.162 kb on - strand, within DDA3937_RS20025 at 4557.194 kb on + strand, within DDA3937_RS20025 at 4557.228 kb on + strand, within DDA3937_RS20025 at 4557.289 kb on - strand, within DDA3937_RS20025 at 4557.315 kb on + strand, within DDA3937_RS20025 at 4557.316 kb on - strand, within DDA3937_RS20025 at 4557.316 kb on - strand, within DDA3937_RS20025 at 4557.316 kb on - strand, within DDA3937_RS20025 at 4557.318 kb on + strand, within DDA3937_RS20025 at 4557.318 kb on + strand, within DDA3937_RS20025 at 4557.318 kb on + strand, within DDA3937_RS20025 at 4557.319 kb on - strand, within DDA3937_RS20025 at 4557.319 kb on - strand, within DDA3937_RS20025 at 4557.319 kb on - strand, within DDA3937_RS20025 at 4557.347 kb on + strand, within DDA3937_RS20025 at 4557.347 kb on + strand, within DDA3937_RS20025 at 4557.347 kb on + strand, within DDA3937_RS20025 at 4557.347 kb on + strand, within DDA3937_RS20025 at 4557.347 kb on + strand, within DDA3937_RS20025 at 4557.348 kb on - strand, within DDA3937_RS20025 at 4557.348 kb on - strand, within DDA3937_RS20025 at 4557.348 kb on - strand, within DDA3937_RS20025 at 4557.348 kb on - strand, within DDA3937_RS20025 at 4557.419 kb on + strand, within DDA3937_RS20025 at 4557.419 kb on + strand, within DDA3937_RS20025 at 4557.420 kb on - strand, within DDA3937_RS20025 at 4557.420 kb on - strand, within DDA3937_RS20025 at 4557.420 kb on - strand, within DDA3937_RS20025 at 4557.449 kb on + strand, within DDA3937_RS20025 at 4557.450 kb on - strand, within DDA3937_RS20025 at 4557.450 kb on - strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.503 kb on + strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025 at 4557.504 kb on - strand, within DDA3937_RS20025
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,554,896 - DDA3937_RS20015 0.54 +0.8 4,555,097 - DDA3937_RS20015 0.68 +0.8 4,555,097 - DDA3937_RS20015 0.68 -0.0 4,555,184 - DDA3937_RS20015 0.75 +2.1 4,555,192 + DDA3937_RS20015 0.75 +0.2 4,555,192 + DDA3937_RS20015 0.75 +1.0 4,555,192 + DDA3937_RS20015 0.75 -0.8 4,555,192 + DDA3937_RS20015 0.75 +0.1 4,555,193 - DDA3937_RS20015 0.75 +0.2 4,555,193 - DDA3937_RS20015 0.75 -0.4 4,555,209 - DDA3937_RS20015 0.76 +0.1 4,555,239 - DDA3937_RS20015 0.78 -0.7 4,555,239 - DDA3937_RS20015 0.78 +1.3 4,555,264 + DDA3937_RS20015 0.80 +0.7 4,555,285 + DDA3937_RS20015 0.82 +1.9 4,555,286 - DDA3937_RS20015 0.82 -0.3 4,555,286 - DDA3937_RS20015 0.82 -0.4 4,555,297 + DDA3937_RS20015 0.83 +0.4 4,555,386 - DDA3937_RS20015 0.89 +0.8 4,555,387 + DDA3937_RS20015 0.89 -0.3 4,555,387 + DDA3937_RS20015 0.89 +0.7 4,555,387 + DDA3937_RS20015 0.89 +0.2 4,555,387 + DDA3937_RS20015 0.89 -0.3 4,555,387 + DDA3937_RS20015 0.89 -0.6 4,555,388 - DDA3937_RS20015 0.89 -0.1 4,555,388 - DDA3937_RS20015 0.89 -0.8 4,555,475 + -0.2 4,555,484 + -0.5 4,555,484 + -0.3 4,555,485 - -0.0 4,555,485 - -0.3 4,555,529 + +0.3 4,555,529 + -0.1 4,555,529 + +0.3 4,555,530 - -0.5 4,555,538 + +0.3 4,555,539 - +0.4 4,555,539 - +1.3 4,555,539 - +0.2 4,555,539 - +1.9 4,555,539 - -0.7 4,555,540 + +0.6 4,555,540 + +0.3 4,555,540 + +0.5 4,555,540 + -1.0 4,555,540 + +0.0 4,555,540 + -0.2 4,555,540 + +0.1 4,555,540 + -0.3 4,555,541 - -1.3 4,555,541 - -0.1 4,555,541 - +0.3 4,555,541 - +0.3 4,555,541 - -0.1 4,555,541 - -1.3 4,555,541 - +0.3 4,555,587 + +0.7 4,555,595 + +0.4 4,555,595 + -0.4 4,555,595 + -0.1 4,555,595 + -0.1 4,555,596 - -0.6 4,555,596 - -0.1 4,555,597 + +0.0 4,555,619 + -0.0 4,555,620 - -0.0 4,555,622 - -0.4 4,555,622 - -0.3 4,555,703 + +0.6 4,555,704 - +0.0 4,555,704 - +0.3 4,555,704 - -0.4 4,555,732 + -0.1 4,555,764 + +0.2 4,555,764 + +1.4 4,555,784 + -0.6 4,555,784 + +0.5 4,555,825 + -0.5 4,555,825 + +0.0 4,555,825 + +0.0 4,555,826 - -0.5 4,556,013 + DDA3937_RS20020 0.21 -0.0 4,556,013 + DDA3937_RS20020 0.21 -1.3 4,556,013 + DDA3937_RS20020 0.21 -1.1 4,556,014 - DDA3937_RS20020 0.21 -0.2 4,556,014 - DDA3937_RS20020 0.21 -0.8 4,556,014 - DDA3937_RS20020 0.21 +0.6 4,556,014 - DDA3937_RS20020 0.21 +0.4 4,556,014 - DDA3937_RS20020 0.21 -0.8 4,556,014 - DDA3937_RS20020 0.21 -1.8 4,556,014 - DDA3937_RS20020 0.21 -1.8 4,556,014 - DDA3937_RS20020 0.21 -0.7 4,556,014 - DDA3937_RS20020 0.21 -0.7 4,556,017 + DDA3937_RS20020 0.21 -0.9 4,556,018 - DDA3937_RS20020 0.22 -0.8 4,556,018 - DDA3937_RS20020 0.22 -0.7 4,556,018 - DDA3937_RS20020 0.22 -0.9 4,556,018 - DDA3937_RS20020 0.22 -0.1 4,556,032 + DDA3937_RS20020 0.23 -1.1 4,556,034 + DDA3937_RS20020 0.24 +0.4 4,556,034 + DDA3937_RS20020 0.24 -0.8 4,556,034 + DDA3937_RS20020 0.24 -0.5 4,556,034 + DDA3937_RS20020 0.24 -0.2 4,556,035 - DDA3937_RS20020 0.24 -0.9 4,556,035 - DDA3937_RS20020 0.24 -0.6 4,556,035 - DDA3937_RS20020 0.24 -0.8 4,556,035 - DDA3937_RS20020 0.24 -0.3 4,556,035 - DDA3937_RS20020 0.24 -0.1 4,556,035 - DDA3937_RS20020 0.24 -0.4 4,556,035 - DDA3937_RS20020 0.24 -0.1 4,556,049 + DDA3937_RS20020 0.26 -0.5 4,556,251 + DDA3937_RS20020 0.53 -0.3 4,556,353 - DDA3937_RS20020 0.67 -0.8 4,556,394 + DDA3937_RS20020 0.72 -0.3 4,556,394 + DDA3937_RS20020 0.72 -1.0 4,556,395 - DDA3937_RS20020 0.73 +1.3 4,556,395 - DDA3937_RS20020 0.73 -0.3 4,556,574 + -0.9 4,556,658 - -0.3 4,556,957 + DDA3937_RS20025 0.27 -0.9 4,556,957 + DDA3937_RS20025 0.27 +0.0 4,556,958 - DDA3937_RS20025 0.27 +0.7 4,556,958 - DDA3937_RS20025 0.27 +0.6 4,556,981 + -0.5 4,556,981 + DDA3937_RS20025 0.29 +0.1 4,556,981 + DDA3937_RS20025 0.29 -2.8 4,556,981 + DDA3937_RS20025 0.29 -0.9 4,556,981 + DDA3937_RS20025 0.29 -1.5 4,556,982 - DDA3937_RS20025 0.29 -1.1 4,556,982 - DDA3937_RS20025 0.29 -1.3 4,556,982 - DDA3937_RS20025 0.29 -0.0 4,556,994 + -1.0 4,556,995 - DDA3937_RS20025 0.30 -0.2 4,557,044 + DDA3937_RS20025 0.34 -0.8 4,557,044 + DDA3937_RS20025 0.34 -1.0 4,557,044 + DDA3937_RS20025 0.34 +1.3 4,557,044 + DDA3937_RS20025 0.34 +0.2 4,557,076 + DDA3937_RS20025 0.36 +1.3 4,557,077 - DDA3937_RS20025 0.36 +0.7 4,557,103 + DDA3937_RS20025 0.38 -0.2 4,557,135 + DDA3937_RS20025 0.40 -0.3 4,557,135 + DDA3937_RS20025 0.40 -0.8 4,557,161 + DDA3937_RS20025 0.42 +0.2 4,557,161 + DDA3937_RS20025 0.42 -0.3 4,557,162 - DDA3937_RS20025 0.42 +0.6 4,557,162 - DDA3937_RS20025 0.42 +0.2 4,557,194 + DDA3937_RS20025 0.45 +0.0 4,557,228 + DDA3937_RS20025 0.47 +0.0 4,557,289 - DDA3937_RS20025 0.52 -0.1 4,557,315 + DDA3937_RS20025 0.54 +0.0 4,557,316 - DDA3937_RS20025 0.54 +0.6 4,557,316 - DDA3937_RS20025 0.54 +1.3 4,557,316 - DDA3937_RS20025 0.54 +1.1 4,557,318 + DDA3937_RS20025 0.54 +0.1 4,557,318 + DDA3937_RS20025 0.54 +1.1 4,557,318 + DDA3937_RS20025 0.54 +0.3 4,557,319 - DDA3937_RS20025 0.54 -0.6 4,557,319 - DDA3937_RS20025 0.54 +0.3 4,557,319 - DDA3937_RS20025 0.54 +0.3 4,557,347 + DDA3937_RS20025 0.56 +0.2 4,557,347 + DDA3937_RS20025 0.56 +0.5 4,557,347 + DDA3937_RS20025 0.56 +1.3 4,557,347 + DDA3937_RS20025 0.56 +0.5 4,557,347 + DDA3937_RS20025 0.56 -0.1 4,557,348 - DDA3937_RS20025 0.56 -0.2 4,557,348 - DDA3937_RS20025 0.56 +0.5 4,557,348 - DDA3937_RS20025 0.56 -0.2 4,557,348 - DDA3937_RS20025 0.56 -0.7 4,557,419 + DDA3937_RS20025 0.62 -0.4 4,557,419 + DDA3937_RS20025 0.62 -1.0 4,557,420 - DDA3937_RS20025 0.62 -0.7 4,557,420 - DDA3937_RS20025 0.62 +0.3 4,557,420 - DDA3937_RS20025 0.62 +0.4 4,557,449 + DDA3937_RS20025 0.64 -0.2 4,557,450 - DDA3937_RS20025 0.64 -0.3 4,557,450 - DDA3937_RS20025 0.64 -0.5 4,557,503 + DDA3937_RS20025 0.68 -0.0 4,557,503 + DDA3937_RS20025 0.68 +0.9 4,557,503 + DDA3937_RS20025 0.68 +0.2 4,557,503 + DDA3937_RS20025 0.68 +1.3 4,557,503 + DDA3937_RS20025 0.68 +0.3 4,557,503 + DDA3937_RS20025 0.68 -0.1 4,557,504 - DDA3937_RS20025 0.68 -1.0 4,557,504 - DDA3937_RS20025 0.68 +0.6 4,557,504 - DDA3937_RS20025 0.68 +0.3 4,557,504 - DDA3937_RS20025 0.68 +1.9 4,557,504 - DDA3937_RS20025 0.68 -0.7 4,557,504 - DDA3937_RS20025 0.68 +0.2
Or see this region's nucleotide sequence