Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19420

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19415 and DDA3937_RS19420 are separated by 65 nucleotidesDDA3937_RS19420 and DDA3937_RS19425 are separated by 119 nucleotides DDA3937_RS19415: DDA3937_RS19415 - ABC transporter ATP-binding protein, at 4,414,242 to 4,416,161 _RS19415 DDA3937_RS19420: DDA3937_RS19420 - LysE family translocator, at 4,416,227 to 4,416,832 _RS19420 DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950 _RS19425 Position (kb) 4416 4417Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4415.306 kb on + strand, within DDA3937_RS19415at 4415.306 kb on + strand, within DDA3937_RS19415at 4415.307 kb on - strand, within DDA3937_RS19415at 4415.307 kb on - strand, within DDA3937_RS19415at 4415.307 kb on - strand, within DDA3937_RS19415at 4415.376 kb on + strand, within DDA3937_RS19415at 4415.478 kb on + strand, within DDA3937_RS19415at 4415.478 kb on + strand, within DDA3937_RS19415at 4415.479 kb on - strand, within DDA3937_RS19415at 4415.522 kb on + strand, within DDA3937_RS19415at 4415.522 kb on + strand, within DDA3937_RS19415at 4415.522 kb on + strand, within DDA3937_RS19415at 4415.523 kb on - strand, within DDA3937_RS19415at 4415.523 kb on - strand, within DDA3937_RS19415at 4415.733 kb on + strand, within DDA3937_RS19415at 4415.733 kb on + strand, within DDA3937_RS19415at 4415.733 kb on + strand, within DDA3937_RS19415at 4415.733 kb on + strand, within DDA3937_RS19415at 4415.734 kb on - strand, within DDA3937_RS19415at 4415.734 kb on - strand, within DDA3937_RS19415at 4415.734 kb on - strand, within DDA3937_RS19415at 4415.784 kb on + strand, within DDA3937_RS19415at 4415.784 kb on + strand, within DDA3937_RS19415at 4415.902 kb on + strand, within DDA3937_RS19415at 4415.902 kb on + strand, within DDA3937_RS19415at 4415.902 kb on + strand, within DDA3937_RS19415at 4415.903 kb on - strand, within DDA3937_RS19415at 4415.903 kb on - strand, within DDA3937_RS19415at 4416.015 kb on + strandat 4416.015 kb on + strandat 4416.016 kb on - strandat 4416.016 kb on - strandat 4416.364 kb on + strand, within DDA3937_RS19420at 4416.408 kb on + strand, within DDA3937_RS19420at 4416.409 kb on - strand, within DDA3937_RS19420at 4416.427 kb on + strand, within DDA3937_RS19420at 4416.428 kb on - strand, within DDA3937_RS19420at 4416.498 kb on + strand, within DDA3937_RS19420at 4416.498 kb on + strand, within DDA3937_RS19420at 4416.498 kb on + strand, within DDA3937_RS19420at 4416.498 kb on + strand, within DDA3937_RS19420at 4416.498 kb on + strand, within DDA3937_RS19420at 4416.499 kb on - strand, within DDA3937_RS19420at 4416.499 kb on - strand, within DDA3937_RS19420at 4416.547 kb on - strand, within DDA3937_RS19420at 4416.585 kb on + strand, within DDA3937_RS19420at 4416.586 kb on - strand, within DDA3937_RS19420at 4416.586 kb on - strand, within DDA3937_RS19420at 4416.586 kb on - strand, within DDA3937_RS19420at 4416.586 kb on - strand, within DDA3937_RS19420at 4416.599 kb on + strand, within DDA3937_RS19420at 4416.600 kb on - strand, within DDA3937_RS19420at 4416.600 kb on - strand, within DDA3937_RS19420at 4416.627 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.673 kb on + strand, within DDA3937_RS19420at 4416.674 kb on - strand, within DDA3937_RS19420at 4416.674 kb on - strand, within DDA3937_RS19420at 4416.674 kb on - strand, within DDA3937_RS19420at 4416.674 kb on - strand, within DDA3937_RS19420at 4416.694 kb on + strand, within DDA3937_RS19420at 4416.694 kb on + strand, within DDA3937_RS19420at 4416.695 kb on - strand, within DDA3937_RS19420at 4416.749 kb on - strandat 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.752 kb on + strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.753 kb on - strand, within DDA3937_RS19420at 4416.757 kb on + strand, within DDA3937_RS19420at 4416.757 kb on + strand, within DDA3937_RS19420at 4416.757 kb on + strand, within DDA3937_RS19420at 4416.757 kb on + strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.758 kb on - strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.760 kb on + strand, within DDA3937_RS19420at 4416.761 kb on - strand, within DDA3937_RS19420at 4416.761 kb on - strand, within DDA3937_RS19420at 4416.761 kb on - strand, within DDA3937_RS19420at 4416.761 kb on - strand, within DDA3937_RS19420at 4416.763 kb on + strand, within DDA3937_RS19420at 4416.779 kb on - strandat 4416.870 kb on + strandat 4416.870 kb on + strandat 4416.870 kb on + strandat 4416.870 kb on + strandat 4416.871 kb on - strandat 4416.871 kb on - strandat 4416.871 kb on - strandat 4416.951 kb on + strandat 4417.196 kb on - strand, within DDA3937_RS19425at 4417.525 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.625 kb on + strand, within DDA3937_RS19425at 4417.626 kb on - strand, within DDA3937_RS19425at 4417.667 kb on + strand, within DDA3937_RS19425at 4417.668 kb on - strand, within DDA3937_RS19425at 4417.668 kb on - strandat 4417.693 kb on + strand, within DDA3937_RS19425at 4417.693 kb on + strand, within DDA3937_RS19425at 4417.693 kb on + strand, within DDA3937_RS19425at 4417.694 kb on - strand, within DDA3937_RS19425at 4417.800 kb on + strand, within DDA3937_RS19425at 4417.801 kb on - strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.803 kb on - strand, within DDA3937_RS19425at 4417.828 kb on + strand, within DDA3937_RS19425at 4417.828 kb on + strand, within DDA3937_RS19425at 4417.829 kb on - strand, within DDA3937_RS19425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,415,306 + DDA3937_RS19415 0.55 -0.1
4,415,306 + DDA3937_RS19415 0.55 -0.5
4,415,307 - DDA3937_RS19415 0.55 -0.2
4,415,307 - DDA3937_RS19415 0.55 -0.5
4,415,307 - DDA3937_RS19415 0.55 +0.2
4,415,376 + DDA3937_RS19415 0.59 +0.4
4,415,478 + DDA3937_RS19415 0.64 -1.0
4,415,478 + DDA3937_RS19415 0.64 -0.1
4,415,479 - DDA3937_RS19415 0.64 -1.0
4,415,522 + DDA3937_RS19415 0.67 +0.0
4,415,522 + DDA3937_RS19415 0.67 +0.5
4,415,522 + DDA3937_RS19415 0.67 +0.1
4,415,523 - DDA3937_RS19415 0.67 -0.5
4,415,523 - DDA3937_RS19415 0.67 -1.4
4,415,733 + DDA3937_RS19415 0.78 +0.0
4,415,733 + DDA3937_RS19415 0.78 -0.4
4,415,733 + DDA3937_RS19415 0.78 -1.7
4,415,733 + DDA3937_RS19415 0.78 -0.3
4,415,734 - DDA3937_RS19415 0.78 -0.3
4,415,734 - DDA3937_RS19415 0.78 -0.5
4,415,734 - DDA3937_RS19415 0.78 -1.7
4,415,784 + DDA3937_RS19415 0.80 +0.6
4,415,784 + DDA3937_RS19415 0.80 +0.1
4,415,902 + DDA3937_RS19415 0.86 -0.2
4,415,902 + DDA3937_RS19415 0.86 -0.2
4,415,902 + DDA3937_RS19415 0.86 -0.2
4,415,903 - DDA3937_RS19415 0.87 +0.7
4,415,903 - DDA3937_RS19415 0.87 -1.1
4,416,015 + +1.5
4,416,015 + +0.5
4,416,016 - +0.5
4,416,016 - +1.9
4,416,364 + DDA3937_RS19420 0.23 +0.0
4,416,408 + DDA3937_RS19420 0.30 +0.0
4,416,409 - DDA3937_RS19420 0.30 -0.1
4,416,427 + DDA3937_RS19420 0.33 +0.3
4,416,428 - DDA3937_RS19420 0.33 -0.5
4,416,498 + DDA3937_RS19420 0.45 +1.6
4,416,498 + DDA3937_RS19420 0.45 -0.2
4,416,498 + DDA3937_RS19420 0.45 +0.0
4,416,498 + DDA3937_RS19420 0.45 +0.6
4,416,498 + DDA3937_RS19420 0.45 +0.3
4,416,499 - DDA3937_RS19420 0.45 +0.1
4,416,499 - DDA3937_RS19420 0.45 -1.4
4,416,547 - DDA3937_RS19420 0.53 -0.2
4,416,585 + DDA3937_RS19420 0.59 +0.4
4,416,586 - DDA3937_RS19420 0.59 +0.4
4,416,586 - DDA3937_RS19420 0.59 -0.3
4,416,586 - DDA3937_RS19420 0.59 +0.4
4,416,586 - DDA3937_RS19420 0.59 +0.7
4,416,599 + DDA3937_RS19420 0.61 +0.5
4,416,600 - DDA3937_RS19420 0.62 +0.5
4,416,600 - DDA3937_RS19420 0.62 -1.5
4,416,627 + DDA3937_RS19420 0.66 +0.1
4,416,673 + DDA3937_RS19420 0.74 +0.0
4,416,673 + DDA3937_RS19420 0.74 -0.1
4,416,673 + DDA3937_RS19420 0.74 +0.1
4,416,673 + DDA3937_RS19420 0.74 +0.4
4,416,673 + DDA3937_RS19420 0.74 +0.1
4,416,673 + DDA3937_RS19420 0.74 -2.8
4,416,673 + DDA3937_RS19420 0.74 +0.7
4,416,673 + DDA3937_RS19420 0.74 +0.7
4,416,674 - DDA3937_RS19420 0.74 +0.0
4,416,674 - DDA3937_RS19420 0.74 -2.0
4,416,674 - DDA3937_RS19420 0.74 +0.0
4,416,674 - DDA3937_RS19420 0.74 -0.9
4,416,694 + DDA3937_RS19420 0.77 +0.9
4,416,694 + DDA3937_RS19420 0.77 -0.1
4,416,695 - DDA3937_RS19420 0.77 +0.2
4,416,749 - +1.0
4,416,752 + DDA3937_RS19420 0.87 +0.1
4,416,752 + DDA3937_RS19420 0.87 -1.0
4,416,752 + DDA3937_RS19420 0.87 -0.7
4,416,752 + DDA3937_RS19420 0.87 +0.8
4,416,752 + DDA3937_RS19420 0.87 +1.6
4,416,752 + DDA3937_RS19420 0.87 +0.5
4,416,752 + DDA3937_RS19420 0.87 +0.1
4,416,752 + DDA3937_RS19420 0.87 +0.1
4,416,752 + DDA3937_RS19420 0.87 +0.2
4,416,752 + DDA3937_RS19420 0.87 +0.3
4,416,752 + DDA3937_RS19420 0.87 -0.3
4,416,752 + DDA3937_RS19420 0.87 -0.3
4,416,753 - DDA3937_RS19420 0.87 +0.9
4,416,753 - DDA3937_RS19420 0.87 -0.1
4,416,753 - DDA3937_RS19420 0.87 +0.5
4,416,753 - DDA3937_RS19420 0.87 -0.3
4,416,753 - DDA3937_RS19420 0.87 -0.1
4,416,753 - DDA3937_RS19420 0.87 -0.6
4,416,753 - DDA3937_RS19420 0.87 +0.1
4,416,753 - DDA3937_RS19420 0.87 +3.3
4,416,753 - DDA3937_RS19420 0.87 +0.9
4,416,757 + DDA3937_RS19420 0.87 +0.8
4,416,757 + DDA3937_RS19420 0.87 +1.0
4,416,757 + DDA3937_RS19420 0.87 +1.1
4,416,757 + DDA3937_RS19420 0.87 -1.3
4,416,758 - DDA3937_RS19420 0.88 +0.3
4,416,758 - DDA3937_RS19420 0.88 +0.4
4,416,758 - DDA3937_RS19420 0.88 -0.3
4,416,758 - DDA3937_RS19420 0.88 -0.1
4,416,758 - DDA3937_RS19420 0.88 +0.7
4,416,758 - DDA3937_RS19420 0.88 -0.0
4,416,758 - DDA3937_RS19420 0.88 -0.2
4,416,760 + DDA3937_RS19420 0.88 +0.6
4,416,760 + DDA3937_RS19420 0.88 +0.2
4,416,760 + DDA3937_RS19420 0.88 -1.7
4,416,760 + DDA3937_RS19420 0.88 +0.6
4,416,760 + DDA3937_RS19420 0.88 +0.5
4,416,760 + DDA3937_RS19420 0.88 +0.2
4,416,760 + DDA3937_RS19420 0.88 -2.5
4,416,760 + DDA3937_RS19420 0.88 -0.3
4,416,760 + DDA3937_RS19420 0.88 +0.1
4,416,760 + DDA3937_RS19420 0.88 -0.0
4,416,761 - DDA3937_RS19420 0.88 +1.4
4,416,761 - DDA3937_RS19420 0.88 +0.4
4,416,761 - DDA3937_RS19420 0.88 -0.9
4,416,761 - DDA3937_RS19420 0.88 +0.3
4,416,763 + DDA3937_RS19420 0.88 +0.0
4,416,779 - -0.0
4,416,870 + -0.3
4,416,870 + +1.3
4,416,870 + +0.5
4,416,870 + -0.1
4,416,871 - -0.1
4,416,871 - -0.3
4,416,871 - +0.3
4,416,951 + +0.8
4,417,196 - DDA3937_RS19425 0.24 -0.7
4,417,525 + DDA3937_RS19425 0.57 +0.2
4,417,534 + DDA3937_RS19425 0.58 -0.0
4,417,534 + DDA3937_RS19425 0.58 -0.1
4,417,534 + DDA3937_RS19425 0.58 +0.5
4,417,534 + DDA3937_RS19425 0.58 +0.5
4,417,535 - DDA3937_RS19425 0.58 -0.0
4,417,535 - DDA3937_RS19425 0.58 -0.0
4,417,535 - DDA3937_RS19425 0.58 +0.2
4,417,625 + DDA3937_RS19425 0.67 +0.5
4,417,626 - DDA3937_RS19425 0.67 +0.2
4,417,667 + DDA3937_RS19425 0.72 -0.6
4,417,668 - DDA3937_RS19425 0.72 -0.5
4,417,668 - +0.3
4,417,693 + DDA3937_RS19425 0.74 -0.5
4,417,693 + DDA3937_RS19425 0.74 +0.9
4,417,693 + DDA3937_RS19425 0.74 -0.3
4,417,694 - DDA3937_RS19425 0.74 +1.1
4,417,800 + DDA3937_RS19425 0.85 -0.8
4,417,801 - DDA3937_RS19425 0.85 +1.1
4,417,802 + DDA3937_RS19425 0.85 +0.1
4,417,802 + DDA3937_RS19425 0.85 -0.4
4,417,802 + DDA3937_RS19425 0.85 +0.7
4,417,802 + DDA3937_RS19425 0.85 -0.6
4,417,802 + DDA3937_RS19425 0.85 +0.7
4,417,803 - DDA3937_RS19425 0.85 -0.2
4,417,828 + DDA3937_RS19425 0.88 -0.0
4,417,828 + DDA3937_RS19425 0.88 +0.9
4,417,829 - DDA3937_RS19425 0.88 -0.0

Or see this region's nucleotide sequence